New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3895233	50 (1.370)	4 (0.120)	4/242	4.2	7.6%	intergenic (+15/+39)	chrR/adeP	chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter
	?	NC_000913	= 3895244	52 (1.570)					intergenic (+26/+28)	chrR/adeP	chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCATCA  >  NC_000913/3895094‑3895372                                                                                                                                            |                                                                                                                                            tGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATcat                                                                                                                                     <  8:8731/148‑1 (MQ=255)      ggcgTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATgg                                                                                                                               <  2:159775/149‑1 (MQ=255)                aGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCATGCATGATTGCTGGCGGGttttt                                                                                                                      >  3:144236/1‑148 (MQ=39)                  aaCAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAAc                                                                                                                   >  8:57658/1‑149 (MQ=255)                    cAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGTGTACGCTGGACAAACTGACCGGGCAAATGTACGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCAAGCAATCATGCTTGGCGGGTTTTTAAcgc                                                                                                                 <  8:68080/149‑1 (MQ=255)                    cAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAAcgc                                                                                                                 >  4:149662/1‑149 (MQ=255)                                gCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGAttt                                                                                                      >  1:189390/1‑148 (MQ=255)                                     ccGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGt                                                                                                  >  1:109120/1‑147 (MQ=255)                                        gagaAGTGATTGATCAGGGTACGCTGGCCCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTGAAGATCTAAATAAAAAACACGCCAGCAATCATGCATGGCGGGTTTTTAAAGCGCTATCGAGTTTAGTGAgag                                                                                             >  8:89568/1‑147 (MQ=255)                                                   gatCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGa                                                                                   <  1:4948/148‑1 (MQ=255)                                                      cAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAAt                                                                               >  1:85531/1‑149 (MQ=255)                                                       aGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATc                                                                              <  4:67958/149‑1 (MQ=255)                                                              gCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGttt                                                                                                                        >  4:134337/1‑100 (MQ=255)                                                              gCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGttt                                                                                                                        <  3:134337/100‑1 (MQ=255)                                                               cTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGAt                                                                      <  2:109120/149‑1 (MQ=255)                                                                tGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGAt                                                                      >  8:6921/1‑148 (MQ=255)                                                                    ccaccTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAGAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATaaa                                                                   >  1:142600/1‑147 (MQ=255)                                                                             cGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCaa                                                        <  2:189390/149‑1 (MQ=255)                                                                             cGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCaa                                                        >  3:94021/1‑149 (MQ=255)                                                                               ggCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGc                                                                                              <  1:181304/109‑1 (MQ=255)                                                                               ggCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGc                                                                                              >  2:181304/1‑109 (MQ=255)                                                                                    ttGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACgatgat                                                 <  2:85531/149‑1 (MQ=255)                                                                                      gACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGAtt                                                <  2:77397/148‑1 (MQ=255)                                                                                       aCCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGAttt                                                                                                      <  1:89633/93‑1 (MQ=255)                                                                                       aCCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGAttt                                                                                                      >  2:89633/1‑93 (MQ=255)                                                                                       aCCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACgatga                                                  >  8:44708/1‑145 (MQ=255)                                                                                       aCCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACgatga                                                  <  7:44708/145‑1 (MQ=255)                                                                                           cATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGttt                                                                                                                        >  2:190418/1‑71 (MQ=255)                                                                                           cATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGttt                                                                                                                        <  1:190418/71‑1 (MQ=255)                                                                                           cATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCAc                                          >  3:140218/1‑149 (MQ=255)                                                                                             tttGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCa                                                                          >  1:72292/1‑115 (MQ=255)                                                                                             tttGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCa                                                                          <  2:72292/115‑1 (MQ=255)                                                                                                  tGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTa                                   <  4:94021/149‑1 (MQ=255)                                                                                                    aGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGc                                                                                                                              <  5:92482/56‑1 (MQ=255)                                                                                                    aGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGc                                                                                                                              >  6:92482/1‑56 (MQ=255)                                                                                                     gTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCt                                     >  5:122849/1‑144 (MQ=255)                                                                                                      tttATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATc                               >  8:36558/1‑149 (MQ=255)                                                                                                         aTTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCAc                             <  3:149662/148‑1 (MQ=255)                                                                                                          ttCAGCGAGTTAAGATCTAAATAAAAACCCCGCCAGCAATCATGCAGGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACg                            <  3:2251/148‑1 (MQ=255)                                                                                                             aGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGa                                                                                                >  6:149576/1‑77 (MQ=255)                                                                                                             aGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGa                                                                                                <  5:149576/77‑1 (MQ=255)                                                                                                              gCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGAc                       >  8:139309/1‑149 (MQ=255)                                                                                                                 aGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTc                    >  2:154957/1‑149 (MQ=255)                                                                                                                 aGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTc                    <  7:57658/149‑1 (MQ=255)                                                                                                                            aaataaaAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTAc              >  8:56054/1‑144 (MQ=255)                                                                                                                            aaataaaAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTAc              <  7:56054/144‑1 (MQ=255)                                                                                                                             aataaaAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTAcc             <  6:122849/144‑1 (MQ=255)                                                                                                                               taaaAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGACCGGTACCGAtatt       >  2:90061/1‑148 (MQ=255)                                                                                                                                 aaaaaCCCGCCAGCTATCATGCATGGCGTGTTTTTAACGCGCGATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCGTAGATCACGCAGACGTCCGGTACCGATTTtcat    <  7:89568/149‑1 (MQ=255)                                                                                                                                  aaaaCCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTTGATCACGCAGACGTCCGGTACCGATTTtcatc   <  1:90061/149‑1 (MQ=255)                                                                                                                                   aaaCCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTtcatca  >  7:129197/1‑149 (MQ=255)                                                                                                                                            |                                                                                                                                            TGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCATCA  >  NC_000913/3895094‑3895372

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.