breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,992,0520TA68.9% 160.2 / 110.1 132D300E (GAT→GAAcyaAadenylate cyclase
*NC_0009134,296,0600CT35.8% 64.0 / 64.6 68intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein

Marginal new junction evidence (lowest skew 10 of 37 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1207790 =60 (0.620)29 (0.340) 24/252 3.4 31.5% coding (290/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 1209619 = 73 (0.850)pseudogene (1/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 = 120780552 (0.540)22 (0.260) 17/252 4.9 27.1% coding (305/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 = 1209602 72 (0.840)pseudogene (18/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 = 4488423112 (1.160)10 (0.110) 9/260 7.5 9.4% intergenic (+23/+138) lptG/yjgR lipopolysaccharide export ABC permease/DUF853 family protein with NTPase fold
?NC_000913 = 4488427 90 (1.020)intergenic (+27/+134) lptG/yjgR lipopolysaccharide export ABC permease/DUF853 family protein with NTPase fold
* ? NC_000913 361678 =108 (1.120)9 (0.100) 8/276 8.3 7.8% coding (183/612 nt) lacA thiogalactoside acetyltransferase
?NC_000913 361700 = 108 (1.150)coding (161/612 nt) lacA thiogalactoside acetyltransferase
* ? NC_000913 = 416834164 (0.660)9 (0.100) 7/264 8.5 14.1% intergenic (+141/‑31) rrsB/gltT 16S ribosomal RNA of rrnB operon/tRNA‑Glu
?NC_000913 = 4168363 50 (0.560)intergenic (+163/‑9) rrsB/gltT 16S ribosomal RNA of rrnB operon/tRNA‑Glu
* ? NC_000913 3802387 =167 (1.720)5 (0.060) 5/232 8.7 3.5% coding (672/1020 nt) waaO UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑ alpha‑1,3‑D‑galactosyltransferase
?NC_000913 3802413 = 141 (1.780)coding (646/1020 nt) waaO UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑ alpha‑1,3‑D‑galactosyltransferase
* ? NC_000913 3201050 =124 (1.280)9 (0.090) 7/280 8.8 6.8% intergenic (‑85/‑157) ygiF/ygiM inorganic triphosphatase/SH3 domain protein
?NC_000913 3201082 = 124 (1.300)intergenic (‑117/‑125) ygiF/ygiM inorganic triphosphatase/SH3 domain protein
* ? NC_000913 303617 =214 (2.210)6 (0.070) 6/258 8.8 3.0% intergenic (+12/+236) yagU/ykgJ DUF1440 family inner membrane acid resistance protein/UPF0153 cysteine cluster protein
?NC_000913 303650 = 193 (2.190)intergenic (+45/+203) yagU/ykgJ DUF1440 family inner membrane acid resistance protein/UPF0153 cysteine cluster protein
* ? NC_000913 = 3185980150 (1.550)7 (0.080) 6/268 9.1 4.6% intergenic (+15/‑81) ygiL/yqiG putative fimbrial‑like adhesin protein/pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein
?NC_000913 = 3185984 148 (1.620)intergenic (+19/‑77) ygiL/yqiG putative fimbrial‑like adhesin protein/pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein
* ? NC_000913 3717215 =108 (1.120)5 (0.060) 5/260 9.4 4.6% intergenic (+9/‑95) yiaD/ghrB multicopy suppressor of bamB; outer membrane lipoprotein/glyoxylate/hydroxypyruvate reductase B
?NC_000913 3717245 = 107 (1.210)intergenic (+39/‑65) yiaD/ghrB multicopy suppressor of bamB; outer membrane lipoprotein/glyoxylate/hydroxypyruvate reductase B