mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 41.1% | 43.5 / 66.3 | 56 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 1,388,283 | 0 | C | T | 21.4% | 82.9 / 18.1 | 42 | intergenic (+22/+22) | tyrR/tpx | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase |
| * | NC_000913 | 1,388,284 | 0 | A | T | 21.4% | 84.1 / 17.4 | 42 | intergenic (+23/+21) | tyrR/tpx | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase |
| * | NC_000913 | 1,388,285 | 0 | A | G | 21.4% | 80.7 / 18.7 | 42 | intergenic (+24/+20) | tyrR/tpx | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase |
| * | NC_000913 | 176,977 | 0 | A | G | 20.0% | 85.6 / 15.7 | 40 | intergenic (+23/+24) | erpA/yadS | iron‑sulfur cluster insertion protein/UPF0126 family inner membrane protein |
| * | NC_000913 | 176,978 | 0 | A | T | 20.0% | 81.3 / 15.3 | 40 | intergenic (+24/+23) | erpA/yadS | iron‑sulfur cluster insertion protein/UPF0126 family inner membrane protein |
| Marginal new junction evidence (lowest skew 10 of 108 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1879829 = | 38 (0.760) | 14 (0.280) | 14/252 | 3.1 | 26.9% | coding (120/360 nt) | yeaR | DUF1971 family protein, nitrate‑inducible |
| ? | NC_000913 | = 2515616 | NA (NA) | noncoding (1344/1345 nt) | IS186 | repeat region | |||||
| * | ? | NC_000913 | 4542682 = | 17 (0.340) | 12 (0.260) | 12/238 | 3.3 | 37.0% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 25 (0.530) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 3852834 = | 110 (2.180) | 9 (0.200) | 8/234 | 4.4 | 8.4% | intergenic (‑50/+56) | ilvB/ivbL | acetolactate synthase 2 large subunit/ilvB operon leader peptide |
| ? | NC_000913 | 3852867 = | 95 (2.060) | intergenic (‑83/+23) | ilvB/ivbL | acetolactate synthase 2 large subunit/ilvB operon leader peptide | |||||
| * | ? | NC_000913 | = 1879834 | 42 (0.850) | 9 (0.180) | 9/250 | 4.4 | 17.6% | coding (115/360 nt) | yeaR | DUF1971 family protein, nitrate‑inducible |
| ? | NC_000913 | 2514274 = | NA (NA) | noncoding (2/1345 nt) | IS186 | repeat region | |||||
| * | ? | NC_000913 | 3861913 = | 122 (2.420) | 9 (0.190) | 7/242 | 4.9 | 7.7% | pseudogene (75/815 nt) | glvG | pseudogene; probable 6‑phospho‑beta‑glucosidase |
| ? | NC_000913 | 3861942 = | 99 (2.070) | pseudogene (46/815 nt) | glvG | pseudogene; probable 6‑phospho‑beta‑glucosidase | |||||
| * | ? | NC_000913 | = 3010438 | 48 (0.950) | 8 (0.170) | 7/240 | 4.9 | 16.3% | coding (411/1386 nt) | hyuA | D‑stereospecific phenylhydantoinase |
| ? | NC_000913 | = 3010453 | 37 (0.780) | coding (426/1386 nt) | hyuA | D‑stereospecific phenylhydantoinase | |||||
| * | ? | NC_000913 | 3774340 = | 163 (3.230) | 6 (0.130) | 6/240 | 5.3 | 3.8% | intergenic (+146/‑84) | mtlA/mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| ? | NC_000913 | 3774360 = | 147 (3.110) | intergenic (+166/‑64) | mtlA/mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent | |||||
| * | ? | NC_000913 | = 3767453 | 120 (2.380) | 6 (0.120) | 6/246 | 5.4 | 4.9% | pseudogene (233/945 nt) | rhsJ | Rhs‑family protein |
| ? | NC_000913 | = 3767498 | 119 (2.450) | pseudogene (278/945 nt) | rhsJ | Rhs‑family protein | |||||
| * | ? | NC_000913 | = 3622709 | 37 (0.730) | 6 (0.120) | 6/246 | 5.4 | 7.2% | coding (3518/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3767498 | 119 (2.450) | pseudogene (278/945 nt) | rhsJ | Rhs‑family protein | |||||
| * | ? | NC_000913 | = 3739543 | 133 (2.630) | 6 (0.130) | 5/236 | 5.6 | 4.7% | intergenic (+16/‑162) | malS/avtA | alpha‑amylase/valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase |
| ? | NC_000913 | = 3739556 | 122 (2.620) | intergenic (+29/‑149) | malS/avtA | alpha‑amylase/valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase | |||||