New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 42094056 (1.520)9 (0.270) 8/238 2.8 14.5% intergenic (+30/‑46) brnQ/proY branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease
?NC_000913 = 420946 55 (1.630)intergenic (+36/‑40) brnQ/proY branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease
Rejected: Frequency below/above cutoff threshold.

CGCTGGCCGAACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCA  >  NC_000913/420801‑421087
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cGCTGGCCGAACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCGCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATgcc                                                                                                                                            >  5:139915‑M2/1‑146 (MQ=255)
     gCCGAACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATgccccgtg                                                                                                                                       >  3:45914‑M2/1‑141 (MQ=255)
       cGAACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATgccccgtggt                                                                                                                                     >  6:116597‑M2/1‑139 (MQ=255)
        gAACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATgccccgtggtt                                                                                                                                    <  6:144210‑M2/149‑12 (MQ=255)
             aGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTa                                                                                                                               <  2:94344/149‑1 (MQ=255)
             aGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTa                                                                                                                               <  7:50461/149‑1 (MQ=255)
                    gCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGc                                                                                                                                                  <  8:69932/123‑1 (MQ=255)
                    gCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGc                                                                                                                                                  >  7:69932/1‑123 (MQ=255)
                    gCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTgtgt                                                                                                                         <  5:9215/148‑1 (MQ=255)
                      gTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGa                                                                                                                      <  4:47329/149‑1 (MQ=255)
                         gTTACTGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATgg                                                                                                                   <  5:144210/149‑1 (MQ=255)
                          ttAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCatcgcagccccgtgg                                                                                                                                      <  1:2236‑M1/129‑16 (MQ=255)
                          ttAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCatcgcagccccgtgg                                                                                                                                      >  2:2236‑M1/1‑114 (MQ=255)
                          ttAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATggg                                                                                                                  >  8:1324/1‑149 (MQ=255)
                                    cAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCatcgcagccccgtggttaaaacaaatgtt                                                                                                                        >  4:121608‑M1/1‑104 (MQ=255)
                                    cAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCatcgcagccccgtggttaaaacaaatgtt                                                                                                                        <  3:121608‑M1/133‑30 (MQ=255)
                                       tggtgATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGAt                                                                                                      <  1:37146/148‑1 (MQ=255)
                                           gATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGttttt                                                                                                                                 >  5:118115/1‑117 (MQ=255)
                                           gATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGttttt                                                                                                                                 <  6:118115/117‑1 (MQ=255)
                                             tggtggTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCGCTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGa                                                                                                            <  7:111611/136‑1 (MQ=255)
                                             tggtggTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCGCTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGa                                                                                                            >  8:111611/1‑136 (MQ=255)
                                              ggtggtTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGt                                                                                               >  5:64467/1‑148 (MQ=255)
                                               gtggtTCTGGCCATTATCAGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTaa                                                                                             <  7:151961/149‑1 (MQ=255)
                                                   ttCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGa                                                                                                       >  2:187879/1‑135 (MQ=255)
                                                   ttCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGa                                                                                                       <  1:187879/135‑1 (MQ=255)
                                                    tCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCatcgccgccccgggggtaaaacaaatgttcagtgagttagtgagcgcgggagcgctcgg                                                                                          >  4:48374‑M1/1‑88 (MQ=255)
                                                    tCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCatcgcagccccgtggttaaaacaaatgttcagtgatttagtgagcgctgga                                                                                                  <  3:46106‑M1/139‑52 (MQ=255)
                                                    tCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCatcgcagccccgtggttaaaacaaatgttcagtgatttagtgagcgctgga                                                                                                  >  4:46106‑M1/1‑88 (MQ=255)
                                                      tGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTAtt                                                                                                                             <  6:88766/110‑1 (MQ=255)
                                                        gCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCt                                                                                    <  2:153047/149‑1 (MQ=255)
                                                          cATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTa                                                                                   >  2:5954/1‑148 (MQ=255)
                                                            ttATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATgccccgtggttaaaacaaatgttcagtgatttagtgagcgctggag                                                                                                 <  6:164494‑M2/132‑47 (MQ=255)
                                                            ttATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATgccccgtggttaaaacaaatgttcagtgatttagtgagcgctggag                                                                                                 >  5:164494‑M2/1‑86 (MQ=255)
                                                             tATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAAc                                                                                         >  5:92711/1‑139 (MQ=255)
                                                             tATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAAc                                                                                         <  6:92711/139‑1 (MQ=255)
                                                                 tGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTgg                                                                           >  2:106670/1‑149 (MQ=255)
                                                                      tCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTaa                                                                      <  1:5954/149‑1 (MQ=255)
                                                                               aGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGcc                                                             <  7:1324/149‑1 (MQ=255)
                                                                                ggTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCca                                                            <  1:106670/149‑1 (MQ=255)
                                                                                    gtcAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATa                                                        >  2:165130/1‑149 (MQ=255)
                                                                                       ccgagcgctcccgcgCTCACTAACTCACTGAACATTTGTTTTACCCCCGGGGCGGCGATgccccgtggttaaaacaaatgttcagtgatttagtgagcgctggaggtcacctgacgacctgccgcgcgatcccagataatggccaga                                                       >  4:48374‑M2/8‑59 (MQ=255)
                                                                                       aGGTGACCTCCAGCGCTCTCTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTggg                                                                          <  8:70062/128‑1 (MQ=255)
                                                                                       aGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTggg                                                                          >  7:70062/1‑128 (MQ=255)
                                                                                         gTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAAt                                                                                                          >  8:127169/1‑94 (MQ=255)
                                                                                         gTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAAt                                                                                                          <  7:127169/94‑1 (MQ=255)
                                                                                           gACCTCCAGCGCTCACTAAATCACTGAACATTTGATTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTAAATGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTa                                                 >  1:136192/1‑149 (MQ=255)
                                                                                              cTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCatcgcagccccgtggttaaaacaaatgttcagtgatttagtgagcgctggaggtcacctgacgacctgccgcgcgatcccagataa                                                               <  6:164494‑M1/132‑87 (MQ=255)
                                                                                              cTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCatcgcagccccgtggttaaaacaaatgttcagtgatttagtgagcgctggaggtcacctgacgacctgccgcgcgatcccagataa                                                               >  5:164494‑M1/1‑46 (MQ=255)
                                                                                              cTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATgg                                              >  5:176959/1‑149 (MQ=255)
                                                                                               tCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATgccccgtggttaaaacaaatgttcagtgatttagtgagcgctggaggtcacctgacgacctgccgcgcgatcccagataatggccaga                                                       <  3:46106‑M2/139‑89 (MQ=255)
                                                                                               tCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATgccccgtggttaaaacaaatgttcagtgatttagtgagcgctggaggtcacctgacgacctgccgcgcgatcccagataatggccaga                                                       >  4:46106‑M2/1‑51 (MQ=255)
                                                                                               tCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTgg                                                                           <  7:113477/119‑1 (MQ=255)
                                                                                               tCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTgg                                                                           >  8:113477/1‑119 (MQ=255)
                                                                                                  aGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACt                                          <  1:165130/149‑1 (MQ=255)
                                                                                                   gcgcTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTg                                         >  3:61600/1‑149 (MQ=255)
                                                                                                          cTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTa                                                 >  5:78963/1‑134 (MQ=255)
                                                                                                          cTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTa                                                 <  6:78963/134‑1 (MQ=255)
                                                                                                             aaTCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGAt                                                                                                      <  2:5752/78‑1 (MQ=255)
                                                                                                             aaTCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGAt                                                                                                      >  1:5752/1‑78 (MQ=255)
                                                                                                             aaTCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCaa                               >  2:115230/1‑149 (MQ=255)
                                                                                                              aTCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAAt                              <  6:64467/149‑1 (MQ=255)
                                                                                                               tCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAAtt                             >  3:120124/1‑149 (MQ=255)
                                                                                                                  cTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTgg                           >  2:69890/1‑148 (MQ=255)
                                                                                                                   tGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTa                                                 >  2:53463/1‑125 (MQ=255)
                                                                                                                   tGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTa                                                 <  1:53463/125‑1 (MQ=255)
                                                                                                                    gAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCAc                        >  3:5653/1‑149 (MQ=255)
                                                                                                                     aaCATTTGTTTTAACCACGGGGCTGCGATgccccgtggttaaaacaaatgttcagtgatttagtgagcgctggaggtcacctgacgacctgccgcgcgatcccagataatggccagaaccaccatcaccactg                                       >  4:121608‑M2/1‑29 (MQ=255)
                                                                                                                     aaCATTTGTTTTAACCACGGGGCTGCGATgccccgtggttaaaacaaatgttcagtgatttagtgagcgctggaggtcacctgacgacctgccgcgcgatcccagataatggccagaaccaccatcaccactg                                       <  3:121608‑M2/133‑105 (MQ=255)
                                                                                                                     aaCATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCAcc                       <  1:69890/149‑1 (MQ=255)
                                                                                                                      aCATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGAGGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTggg                                       <  8:121805/132‑1 (MQ=255)
                                                                                                                             ttttAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGAt                                                                                                      <  6:178449/62‑1 (MQ=255)
                                                                                                                             ttttAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGAt                                                                                                      >  5:178449/1‑62 (MQ=255)
                                                                                                                             ttttAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGt                                                                    <  2:104798/96‑1 (MQ=255)
                                                                                                                             ttttAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGt                                                                    >  1:104798/1‑96 (MQ=255)
                                                                                                                                 aaCCACGGGGCatcgcagccccgtggttaaaacaaatgttcagtgatttagtgagcgctggaggtcacctgacgacctgccgcgcgatcccagataatggccagaaccaccatcaccactgttggcattaaccacgccagaccttgttc           <  6:144210‑M1/149‑139 (MQ=255)
                                                                                                                                  aCCACGGGGCatcgcagccccgtggttaaaacaaatgttcagtgatttagtgagcgctggaggtcacctgacgacctgccgcgcgatcccagataatggccagaaccaccatcaccactgttggcattaaccacgccagaccttgttcg          >  6:116597‑M1/1‑10 (MQ=255)
                                                                                                                                  aCCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACg          <  1:115230/149‑1 (MQ=255)
                                                                                                                                   ccACGGGGCTGCGATgccccgtggttaaaacaaatgttcagtgatttagtgagcgctggaggtcacctgacgacctgccgcgcgatcccagataatggccagaaccaccatcaccactgttggcattaa                             <  1:2236‑M2/129‑115 (MQ=255)
                                                                                                                                   ccACGGGGCTGCGATgccccgtggttaaaacaaatgttcagtgatttagtgagcgctggaggtcacctgacgacctgccgcgcgatcccagataatggccagaaccaccatcaccactgttggcattaa                             >  2:2236‑M2/1‑15 (MQ=255)
                                                                                                                                    cACGGGGCatcgcagccccgtggttaaaacaaatgttcagtgatttagtgagcgctggaggtcacctgacgacctgccgcgcgatcccagataatggccagaaccaccatcaccactgttggcattaaccacgccagaccttgttcggc        >  3:45914‑M1/1‑8 (MQ=255)
                                                                                                                                         ggCatcgcagccccgtggttaaaacaaatgttcagtgatttagtgcgcgctggaggtcacctgacgacctgccgcgcgatcccagataatggccagaaccaccatcaccactgttggcattaaccacgccagaccttgttcggccagcg   >  5:139915‑M1/1‑3 (MQ=255)
                                                                                                                                          gCTGCGTTGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGATTTGATGGAAAGTAAGAACAAGCTATAGCGTGTGCTAAGTACCCGCCTCATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTAGGGTTCGGCa  <  2:136192/149‑1 (MQ=255)
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CGCTGGCCGAACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCA  >  NC_000913/420801‑421087

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.