Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 2,867,796 IS1 (+) +9 bp coding (950‑958/1140 nt) nlpD ← activator of AmiC murein hydrolase activity, lipoprotein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2867796 =0 (0.000)29 (0.790) 28/260 0.5 100% coding (958/1140 nt) nlpD activator of AmiC murein hydrolase activity, lipoprotein
?NC_000913 = 3584195 NA (NA)noncoding (768/768 nt) IS1 repeat region
* ? NC_000913 = 28678040 (0.000)35 (0.950) 30/260 0.4 100% coding (950/1140 nt) nlpD activator of AmiC murein hydrolase activity, lipoprotein
?NC_000913 3583428 = NA (NA)noncoding (1/768 nt) IS1 repeat region

CCTTGTAACGAATTTCAAAATGCAAGCGTGTTGAACTGGTTCCGGTGCTACCCATGGTCGCTATTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAATCCCCTTGTTGCCCCCCTCAGAAGCGCCAAAGGTT  >  NC_000913/2867655‑2867944
                                                                                                                                             |                                                                                                                                                    
ccTTGTCACGACTTTCAAAATGCAAGCGGGTTGAACTGGTTCCGGTGCTACCCATGGTCGCTATTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCGGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGt                                                                                                                                               <  7:82692/149‑1 (MQ=255)
                 aaaTGCAAGCGTGTTGAACTGGTTCCGGTGCTACCCATGGTCGCTATTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgc                                                                                                                                   >  4:79809‑M1/1‑133 (MQ=255)
                 aaaTGCAAGCGTGTTGAACTGGTTCCGGTGCTACCCATGGTCGCTATTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgc                                                                                                                                   <  3:79809‑M1/144‑12 (MQ=255)
                      cAAGCGTGTTGAACTGGTTCCGGTGCTACCCATGGTCGCTATTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactg                                                                                                                         <  5:50577‑M1/149‑22 (MQ=255)
                           ctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAAt                                                                                                                                    <  7:101874‑M1/19‑1 (MQ=255)
                           ctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAAt                                                                                                                                    >  8:101874‑M1/115‑133 (MQ=255)
                             gtTGAACTGGTTCCGGTGCTACCCATGGTCGCTATTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgc                                                                                                                                   >  2:361‑M1/1‑121 (MQ=255)
                             gtTGAACTGGTTCCGGTGCTACCCATGGTCGCTATTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgc                                                                                                                                   <  1:361‑M1/132‑12 (MQ=255)
                              gcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATc                                                                                                                                   >  2:435‑M1/112‑131 (MQ=255)
                              gcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATc                                                                                                                                   <  1:435‑M1/20‑1 (MQ=255)
                                      gTTCCGGTGCTACCCATGGTCGCTATTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatg                                                                                                          <  5:94257‑M1/148‑37 (MQ=255)
                                               cTACCCATGGTCGCTTTTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttga                                                                                                <  1:7596‑M1/149‑47 (MQ=255)
                                                tcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATa                                                                                                <  1:153853‑M1/55‑1 (MQ=255)
                                                  gctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATaaa                                                                                              <  4:152126‑M1/57‑1 (MQ=255)
                                                  cccATGGTCGCTATTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGGACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggt                                                                                             <  1:189441‑M1/149‑50 (MQ=255)
                                                    tgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTAc                                                                                                       >  3:59590‑M1/90‑137 (MQ=255)
                                                    tgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTAc                                                                                                       <  4:59590‑M1/48‑1 (MQ=255)
                                                    tgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAaacaa                                                                                           <  1:56429‑M1/60‑1 (MQ=255)
                                                     gtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGt                                                                                                                                               <  3:104157‑M1/8‑1 (MQ=255)
                                                     gtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGt                                                                                                                                               >  4:104157‑M1/89‑96 (MQ=255)
                                                     aTGGTCGCTATTTTTTGCCCCTCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgct                                                                                          >  1:63363‑M1/1‑97 (MQ=255)
                                                     aTGGTCGCTATTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgct                                                                                          >  5:87605‑M1/1‑97 (MQ=255)
                                                      tcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAAcg                                                                                         >  1:39787‑M1/88‑149 (MQ=255)
                                                         ttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCgg                                                                                      <  8:82408‑M1/65‑1 (MQ=255)
                                                               aaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCt                                                                                >  7:82408‑M1/79‑149 (MQ=255)
                                                                  tttGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaactttctgatttagtgtatgatggtgtttttgaggtgctccagtggcttctg                                                                             >  7:80598‑M1/1‑84 (MQ=255)
                                                                      ccccGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttc                                                                         <  5:115515‑M1/149‑70 (MQ=255)
                                                                      ccccGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgttt                                                                                                    >  2:20635‑M1/1‑80 (MQ=255)
                                                                      ccccGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgttt                                                                                                    <  1:20635‑M1/122‑43 (MQ=255)
                                                                        ccGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtg                                                                                                                 <  2:181187‑M1/107‑30 (MQ=255)
                                                                        ccGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtg                                                                                                                 >  1:181187‑M1/1‑78 (MQ=255)
                                                                         agctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGa                                                                      >  3:152126‑M1/69‑149 (MQ=255)
                                                                              catgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGtt                                                                                                         >  2:132286‑M1/64‑109 (MQ=255)
                                                                              catgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGtt                                                                                                         <  1:132286‑M1/46‑1 (MQ=255)
                                                                               aaCTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagct                                                                 <  4:61012‑M1/148‑78 (MQ=255)
                                                                                tgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAaac                                                                                             <  8:77809‑M1/58‑1 (MQ=255)
                                                                                   caaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAgcgc                                                                                                            <  7:144288‑M1/43‑1 (MQ=255)
                                                                                     aagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTc                                                          >  2:56429‑M1/57‑149 (MQ=255)
                                                                                      tgttgtTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttga                                                                                                >  8:42984‑M1/1‑64 (MQ=255)
                                                                                          atcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCt                                                        >  4:119656‑M1/52‑146 (MQ=255)
                                                                                          atcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATATGCGGTCGCGATAATTGCCTGTCCt                                                        <  3:119656‑M1/95‑1 (MQ=255)
                                                                                           ttCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgtt                                                     <  2:63363‑M1/148‑90 (MQ=255)
                                                                                           ttCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgat                                                                                                           >  8:118400‑M1/1‑59 (MQ=255)
                                                                                           ttCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgat                                                                                                           <  7:118400‑M1/94‑36 (MQ=255)
                                                                                             cccGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgttttt                                                                                                  <  1:105622‑M1/101‑45 (MQ=255)
                                                                                             cccGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgttttt                                                                                                  >  2:105622‑M1/1‑57 (MQ=255)
                                                                                                     tctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGa                                           <  6:131558‑M1/108‑1 (MQ=255)
                                                                                                     aGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtga                                                                                                                                         <  4:74134‑M1/54‑6 (MQ=255)
                                                                                                     aGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtga                                                                                                                                         >  3:74134‑M1/1‑49 (MQ=255)
                                                                                                         ttGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacgggg                                      >  1:49104‑M1/1‑45 (MQ=255)
                                                                                                           cataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAAt                                    <  4:38180‑M1/115‑1 (MQ=255)
                                                                                                           cataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAAt                                    >  2:153853‑M1/35‑149 (MQ=255)
                                                                                                                 ttATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgc                                >  5:40233‑M1/1‑37 (MQ=255)
                                                                                                                 ttATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgc                                <  6:40233‑M1/147‑111 (MQ=255)
                                                                                                                  cactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAATCCCCttg                             <  7:36944‑M1/122‑1 (MQ=255)
                                                                                                                       tcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAATCCCCTTGTTGcc                        <  1:84684‑M1/127‑1 (MQ=255)
                                                                                                                               aCTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgc                                >  6:55185‑M1/1‑23 (MQ=255)
                                                                                                                               aCTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgc                                <  5:55185‑M1/133‑111 (MQ=255)
                                                                                                                               aCTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgttttt                                                                                                  <  2:186115‑M1/67‑45 (MQ=255)
                                                                                                                               aCTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgttttt                                                                                                  >  1:186115‑M1/1‑23 (MQ=255)
                                                                                                                                         tcatcaTTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacat      >  8:64012‑M1/1‑13 (MQ=255)
                                                                                                                                          accCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAATCCCCTTGTTGCCCCCCTCAGAAGCGCCAAAg     <  8:88988‑M1/146‑1 (MQ=255)
                                                                                                                                            cCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAATCCCCTTGTTGCCCCCCTCAGAAGCGCCAAAGGt   <  5:29730‑M1/148‑1 (MQ=255)
                                                                                                                                             catTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagc  >  6:173946‑M1/1‑9 (MQ=255)
                                                                                                                                             |                                                                                                                                                    
CCTTGTAACGAATTTCAAAATGCAAGCGTGTTGAACTGGTTCCGGTGCTACCCATGGTCGCTATTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAATCCCCTTGTTGCCCCCCTCAGAAGCGCCAAAGGTT  >  NC_000913/2867655‑2867944

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.