New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 109746314 (0.150)5 (0.060) 5/250 NT 26.9% intergenic (+634/+102) ycdU/serX putative inner membrane protein/tRNA‑Ser
?NC_000913 = 1097467 14 (0.160)intergenic (+638/+98) ycdU/serX putative inner membrane protein/tRNA‑Ser

CATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATA  >  NC_000913/1097317‑1097608
                                                                                                                                                  |                                                                                                                                                  
cATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTg                                                                                                                                                  >  4:31717/1‑149 (MQ=32)
 aTCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGt                                                                                                                                                 >  5:75612/1‑149 (MQ=32)
 aTCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGC                                                                                                                                                    <  7:29873‑M1/146‑1 (MQ=255)
  tCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTc                                                                                                                                                <  1:3763/149‑1 (MQ=32)
         ggTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCgacagccagtt                                                                                                                                         <  1:233299‑M1/149‑12 (MQ=255)
         ggTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCgccagtt                                                                                                                                         >  6:75612‑M2/1‑142 (MQ=255)
             tgtgCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCgacagccagttggac                                                                                                                                     <  7:191412‑M1/149‑16 (MQ=255)
               tgCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCgcca                                                                                                                                            <  8:102240‑M2/140‑5 (MQ=255)
               tgCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCgcca                                                                                                                                            >  7:102240‑M2/1‑136 (MQ=255)
               tgCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGaa                                                                                                                                   >  3:202960/1‑149 (MQ=11)
               tgCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGaa                                                                                                                                   <  1:2609/149‑1 (MQ=11)
                gCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAAc                                                                                                                                  >  1:386301/1‑149 (MQ=31)
                 cAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAAcc                                                                                                                                 >  4:218518/1‑149 (MQ=32)
                  aaTATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCgc                                                                                                                                              <  6:232260‑M2/135‑3 (MQ=255)
                  aaTATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCgc                                                                                                                                              >  5:232260‑M2/1‑133 (MQ=255)
                      taCGAAAAAAAAGCCCGTACTTTCGTACGATGTCTTCTTTTAATATGGCGGTGAGGGGGGGATTGACTGGCTTCGCTCGCCCTGCGGGGAGCCCGCTCACTGCGTTCACGTTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCgg                                                                                                                             <  4:355256/148‑1 (MQ=11)
                           aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGGGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCgacagccagttggacagaccgtgaacgca                                                                                                                       <  5:13883‑M1/149‑30 (MQ=255)
                                          tttCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCgccag                                                                                                                                           >  7:53026‑M2/1‑109 (MQ=255)
                                          tttCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCgccag                                                                                                                                           <  8:53026‑M2/114‑6 (MQ=255)
                                                 cGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCgccagttg                                                                                                                                        >  5:158071‑M2/1‑102 (MQ=255)
                                                 cGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCgccagttg                                                                                                                                        <  6:158071‑M2/110‑9 (MQ=255)
                                                  gAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCgccag                                                                                                                                           <  7:154636‑M2/106‑6 (MQ=255)
                                                  gAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCgccag                                                                                                                                           >  8:154636‑M2/1‑101 (MQ=255)
                                                                                   aTTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCgccagttggacagaccgtgaacgcagt                                                                                                                     <  5:315169‑M2/95‑28 (MQ=255)
                                                                                   aTTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCgccagttggacagaccgtgaacgcagt                                                                                                                     >  6:315169‑M2/1‑68 (MQ=255)
                                                                                                                        aCTGCGTTCACGGTCTGTCCAACTGGCgacagccagttggacagaccgtgaacgcagtgagcgggctgcccgcagggcgagcgaagcgagtcaat                                                                                >  6:315169‑M1/1‑27 (MQ=255)
                                                                                                                        aCTGCGTTCACGGTCTGTCCAACTGGCgacagccagttggacagaccgtgaacgcagtgagcgggctgcccgcagggcgagcgaagcgagtcaat                                                                                <  5:315169‑M1/95‑69 (MQ=255)
                                                                                                                          tGCGTTCACGGTCTGTCCAACTGGCTGTCgccagttggacagaccgtgaacgcagtgagcgggctgcccgcagggcgagcgaagcgagtcaatccccccctccccgccatatttaaagaagagctcgtacgaaagtacgggcttttttt                        <  5:13883‑M2/149‑121 (MQ=255)
                                                                                                                          tGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGGGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGaa                       >  8:166000/1‑149 (MQ=17)
                                                                                                                              ttCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc                   >  4:352951/1‑149 (MQ=35)
                                                                                                                                 aCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGAATCGAACCCCCg                 >  6:267892/1‑148 (MQ=37)
                                                                                                                                   ggTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATa              >  3:111156/1‑149 (MQ=40)
                                                                                                                                    gTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATAc             >  7:66572/1‑149 (MQ=40)
                                                                                                                                    gTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATAc             >  7:59807/1‑149 (MQ=40)
                                                                                                                                     tCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc                          >  2:357944/1‑135 (MQ=11)
                                                                                                                                     tCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc                          <  1:357944/135‑1 (MQ=11)
                                                                                                                                        gTCCAACTGGCTGTCgccagttggacagaccgtgaacgcagtgagcgggctgcccgcagggcgagcgaagcgagtcaatccccccctcaccgccatatttaaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcaca          <  7:191412‑M2/149‑135 (MQ=255)
                                                                                                                                           cAACTGGCgacagccagttggacagaccgtgaacgcagtgagcgggctgcccgcagggcgagcgaagcgagtcaatccccccctcaccgccatatttaaagaagagctcg                                              <  6:158071‑M1/110‑103 (MQ=255)
                                                                                                                                           cAACTGGCgacagccagttggacagaccgtgaacgcagtgagcgggctgcccgcagggcgagcgaagcgagtcaatccccccctcaccgccatatttaaagaagagctcg                                              >  5:158071‑M1/1‑8 (MQ=255)
                                                                                                                                            aaCTGGCgacagccagttggacagaccgtgaacgcagtgagcgggctgcccgcagggcgagcgaagcgagtcaatccccccctcaccgccatatttaaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacacc      >  6:75612‑M1/1‑7 (MQ=255)
                                                                                                                                            aaCTGGCTGTCgccagttggacagaccgtgaacgcagtgagcgggctgcccgcagggcgagcgaagcgagtcaatccccccctcaccgccatatttaaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacacc      <  1:233299‑M2/149‑139 (MQ=255)
                                                                                                                                            aaCTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGt     <  2:158728/149‑1 (MQ=255)
                                                                                                                                              cTGGCgacagccagttggacagaccgtgaacgcagtgagcgggctgcccgcagggcgagcgaagcgagtcaatccccccctcaccgccatatttaaagaagagctcgtacgaaa                                       >  7:53026‑M1/1‑5 (MQ=255)
                                                                                                                                              cTGGCgacagccagttggacagaccgtgaacgcagtgagcgggctgcccgcagggcgagcgaagcgagtcaatccccccctcaccgccatatttaaagaagagctcgtacgaaa                                       <  8:53026‑M1/114‑110 (MQ=255)
                                                                                                                                              cTGGCgacagccagttggacagaccgtgaacgcagtgagcgggctgcccgcagggcgagcgaagcgagtcaatccccccctcaccgccatatttaaagaagagctc                                               <  7:154636‑M1/106‑102 (MQ=255)
                                                                                                                                              cTGGCgacagccagttggacagaccgtgaacgcagtgagcgggctgcccgcagggcgagcgaagcgagtcaatccccccctcaccgccatatttaaagaagagctc                                               >  8:154636‑M1/1‑5 (MQ=255)
                                                                                                                                               tGGCgacagccagttggacagaccgtgaacgcagtgagcgggctgcccgcagggcgagcgaagcgagtcaatccccccctcaccgccatatttaaagaagagctcgtacgaaagtacgggcttttttttcgtatattgca            >  7:102240‑M1/1‑4 (MQ=255)
                                                                                                                                               tGGCgacagccagttggacagaccgtgaacgcagtgagcgggctgcccgcagggcgagcgaagcgagtcaatccccccctcaccgccatatttaaagaagagctcgtacgaaagtacgggcttttttttcgtatattgca            <  8:102240‑M1/140‑137 (MQ=255)
                                                                                                                                               tGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGta    >  8:137890/1‑148 (MQ=255)
                                                                                                                                                 gCgacagccagttggacagaccgtgaacgcagtgagcgggctgcccgcagggcgagcgaagcgagtcaatccccccctcaccgccatatttaaagaagagctcgtacgaaagtacgggcttttttttcgtatatt               <  6:232260‑M1/135‑134 (MQ=255)
                                                                                                                                                 gCgacagccagttggacagaccgtgaacgcagtgagcgggctgcccgcagggcgagcgaagcgagtcaatccccccctcaccgccatatttaaagaagagctcgtacgaaagtacgggcttttttttcgtatatt               >  5:232260‑M1/1‑2 (MQ=255)
                                                                                                                                                 gCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGtata  <  6:1932/147‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                  
CATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATA  >  NC_000913/1097317‑1097608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.