New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	292292 =	113 (1.300)	8 (0.100)	8/244	NT	7.2%	intergenic (+61/+30)	yagJ/yagK	CP4‑6 prophage; uncharacterized protein;Phage or Prophage Related/CP4‑6 prophage; conserved protein
	?	NC_000913	292313 =	101 (1.260)					intergenic (+82/+9)	yagJ/yagK	CP4‑6 prophage; uncharacterized protein;Phage or Prophage Related/CP4‑6 prophage; conserved protein

CCAATAGTACTGACTTCCAGCAGAACTACCAGGCGCTGTTAACCCGACTGGACTACCTGACCAAAGTTGAAAGCAAAGTGTTTGGTGAAGGAGACCGTAACTTCGGCTGTAGCCAAATCGAACTGTAAGTCGGTAATGGCCTTCTCAGTGAGAAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/292449‑292292 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgagaaggccATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGTAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCA  >  NC_000913/292313‑292458                                                                                                                                                                                                                                                                                                                  CCAATAGTACTGACTTCCAGCAGAACTACCAGGCGCTGTTAACCCGACTGGACTACCTGACCAAAGTTGAAAGCAAAGTGTTTGGTGAAGGAGACCGTAACTTCGGCTGTAGCCAAATCGAACTGTAAGTCGGTAATGGCCTTCTCAGT                                                                                                                                                             >  7:170396/1‑149  CAATAGTACTGACTTCCAGCAGAACTACCAGGCGCTGTTAACCCGACTGGACTACCTGACCAAAGTTGAAAGCAAAGTGTTTGGTGAAGGAGGCCGTAACTTCGGCTGTAGCCAAATCGAACTGTAAGTCGGTAATGGCCTTCTCAGT                                                                                                                                                             >  2:170324/1‑148  CAATAGTACTGACTTCCAGCAGAACTACCAGGCGCTGTTAACCCGACTGGACTACCTGACCAAAGTTGAAAGCAAAGTGTTTGGTGAAGGAGACCGTAACTTCGGCTGTAGCCAAATCGAACTGTAAGTCGGTAATGGCCTTCTCAGT                                                                                                                                                             >  8:38411/1‑148   AATAGTACTGACTTCCAGCAGAACTACCAGGCGCTGTTAACCCGACTGGACTACCTGACCAAAGTTGAAAGCAAAGTGTTTGGTGAAGGAGACCGTAACTTCGGCTGTAGCCAAATCGAACTGTAAGTCGGTAATGGCCTTCTCAGTGA                                                                                                                                                           <  3:82297/149‑1   AATAGTACTGACTTCCAGCAGAACTACCAGGCGCTGTTAACCCGACTGGACTACCTGACCAAAGTTGAAAGCAAAGTGTTTGGTGAAGGAGACCGTAACTTCGGCTGTAGCCAAATCGAACTGTAAGTCGGTAATGGCCTTCTCAGT                                                                                                                                                             <  7:170462/147‑1   AATAGTACTGACTTCCAGCAGAACTACCAGGCGCTGTTAACCCGACTGGACTACCTGACCAAAGTTGAAAGCAAAGTGTTTGGTGAAGGAGACCGTAACTTCGGCTGTAGCCAAATCGAACTGTAAGTCGGTAATGGCCTTCTCAGT                                                                                                                                                             >  8:170462/1‑147    ATAGTACTGACTTCCAGCAGAACTACCAGGCGCTGTTAACCCGACTGGACTACCTGACCAAAGTTGAAAGCAAAGTGTTTGGTGAAGGAGACCGTAACTTCGGCTGTAGCCAAATCGAACTGTAAGTCGGTAATGGCCTTCTCAGT                                                                                                                                                             >  1:57161/1‑146     TAGTACTGACTTCCAGCAGAACTACCAGGCGCTGTTAACCCGACTGGACTACCTGACCAAAGTTGAAAGCAAAGTGTTTGGTGAAGGAGACCGTAACTTCGGCTGTAGCCAAATCGAACTGTAAGTCGGTAATGGCCTTCTCAGTGAG                                                                                                                                                          >  7:383975/1‑148         ACTGACTTCCAGCAGAACTACCAGGCGCTGTTAACCCGACTGGACTACCTGACCAAAGTTGAAAGCAAAGTGTTTGGTGAAGGAGACCGTAACTTCGGCTGTAGCCAAATCGAACTGTAAGTCGGTAATGGCCTTCTCAGTGAGAAGGC                                                                                                                                                     >  5:75294/1‑149          CTGACTTCCAGCAGAACTACCAGGCGCTGTTAACCCGACTGGACTACCTGACCAAAGTTGAAAGCAAAGTGTTTGGTGAAGGAGACCGTACCTTCGGCTGTAGCCAAATCGAACTGTAAGTCGGTAATGGCCTTCTCAGTGAGAAGGCC                                                                                                                                                    >  8:383509/1‑149          CTGACTTCCAGCAGAACTACCAGGCGCTGTTAACCCGACTGGACTACCTGACCAAAGTTGAAAGCAAAGTGTTTGGTGAAGGAGACCGTAACTTCGGCTGTAGCCAAATCGAACTGTAAGTCGGTAATGGCCTTCTCAGTGAGAAGGCC                                                                                                                                                    >  4:332212/1‑149                   AGCAGAACTACCAGGCGCTGTTAACCCGACTGGACTACCTGACCAAAGTTGAAAGCAAAGTGTTTGGTGAAGGAGACCGTAACTTCGGCTGTAGCCAAATCGAACTGTAAGTCGGTAATGGCCTTCTCAGTGAGAAGGCCATTACCGAC                                                                                                                                           >  4:220569/1‑149                        AACTACCAGGCGCTGTTAACCCGACTGGACTACCTGACCAAAGTTGAAAGCAAAGTGTTTGGTGAAGGAGACCGTAACTTCGGCTGTAGCCAAATCGAACTGTAAGTCGGTAATGGCCTTCTCAGTGAGAAGGCCATTACCGACTTACA                                                                                                                                      <  3:220569/149‑1                                            CCGACTGGACTACCTGACCAAAGTTGAAAGCAAAGTGTTTGGTGAAGGAGACCGTAACTTCGGCTGTAGCCAAATCGAACTGTAAGTCGGTAATGGCCTTCTCAGTGAGAAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCC                                                                                                                   >  1:325875/1‑148                                                    ACTACCTGACAAAAGTTGAAAGCAAAGTGTTTGGTGAAGGAGACCGTAACTTCGGCTGTAGCCAAATCGAACTGTAAGTCGGTAATGGCCTTCTCAGTGAGAAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACG                                                                                                          <  2:325875/149‑1                                                                     GAAAGCAAAGTGTTTGGTGAAGGAGACCGTAACTTCGGCTGTAGCCAAATCGAACTGTAAGTCGGTAATGGCCTTCTCAGTGAGAAG                                                                                                                                                       >  7:183171/1‑87                                                                     GAAAGCAAAGTGTTTGGTGAAGGAGACCGTAACTTCGGCTGTAGCCAAATCGAACTGTAAGTCGGTAATGGCCTTCTCAGTGAGAAG                                                                                                                                                       <  8:183171/87‑1                                                                                                                                 GTCGGTAATGGCCTTCTCAGTGAGAAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGTAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCT                             >  5:46014/1‑149                                                                                                                                     cagATGGCCTTCTCCGTGAGAAGGCCATTACCGACTTACAGTGGGATTTGGCTCCAGCCGAAGTTACTGTCTCCGTCCCCAACCACTTTGCTTTCAACTTTGGGCAGGTAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAA                         <  1:200916/146‑1                                                                                                                                           GCCTTCTCAGTGAGAAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGTAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAG                    >  1:144990/1‑148                                                                                                                                            CCTTCTCAGTGAGAAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGTAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTA                  >  8:225999/1‑149                                                                                                                                                    GTGAGAAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGTAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGT          <  6:46014/149‑1                                                                                                                                                        GAAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTCCGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGTAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTC       <  1:104193/148‑1                                                                                                                                                         AAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGTAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTA     <  3:348235/149‑1                                                                                                                                                         AAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGGCTCCTTCACCAAACACTTTGCTTTCTACTTTGGTCAGGTAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTTGAAGTCAGTACTATTGGTGTCTA     <  4:107843/149‑1                                                                                                                                                            GCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGTAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCA  <  5:286364/149‑1                                                                                                                                                                                                                                                                                                                  CCAATAGTACTGACTTCCAGCAGAACTACCAGGCGCTGTTAACCCGACTGGACTACCTGACCAAAGTTGAAAGCAAAGTGTTTGGTGAAGGAGACCGTAACTTCGGCTGTAGCCAAATCGAACTGTAAGTCGGTAATGGCCTTCTCAGTGAGAAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/292449‑292292 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgagaaggccATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGTAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCA  >  NC_000913/292313‑292458

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.