New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 174258050 (0.580)4 (0.050) 4/246 NT 7.8% intergenic (+19/+21) cfa/ribC cyclopropane fatty acyl phospholipid synthase, SAM‑dependent/riboflavin synthase, alpha subunit
?NC_000913 = 1742585 48 (0.590)intergenic (+24/+16) cfa/ribC cyclopropane fatty acyl phospholipid synthase, SAM‑dependent/riboflavin synthase, alpha subunit

TGAACGCTTTAAACGAATGTTTACCTATTATCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGTTTGTGGATCGATTTCAATGTTGACGCGTGCGCCAAGTTTTTTC  >  NC_000913/1742432‑1742724
                                                                                                                                                    |                                                                                                                                                
tGAACGCTTTAAACGAATGTTTACCTATTATCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCC                                                                                                                                                  >  3:233873‑M1/1‑149 (MQ=255)
  caCGCTATAAACGAATGTTTACCTATTATCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCGCTGGCAGGTCGTGATCTCAAGCGGTGTTGAAAACGGCCTTCGAGTGGCTCTCTAAAGGCTATTCTATCGCCCCctc                                                                                                                                                >  2:326221/2‑149 (MQ=255)
    cGCTTTAAACGAATGGTTACCTATTATCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCtctc                                                                                                                                              >  5:372834/1‑149 (MQ=255)
           aaCGAATGTTTACCTATTATCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCgggggc                                                                                                                                       >  5:132400‑M2/1‑143 (MQ=255)
           aaCGAATGTTTACCTATTATCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCggggg                                                                                                                                        >  3:221163‑M2/1‑143 (MQ=255)
            aCGAATGTTTACCTATTATCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCgggggc                                                                                                                                       <  8:178043‑M2/148‑7 (MQ=255)
            aCGAATGTTTACCTATTATCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGACGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCgggggc                                                                                                                                       <  1:44554‑M2/148‑7 (MQ=255)
               aaTGTTTACCTATTATCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGAtt                                                                                                                                   >  1:333336/1‑149 (MQ=255)
                 tGTTTACCTATTATCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTc                                                                                                                                 <  4:70777/149‑1 (MQ=255)
                      aCCTATTATCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGAttt                                                                                                                                  >  8:45718/1‑143 (MQ=255)
                      aCCTATTATCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGAttt                                                                                                                                  <  7:45718/143‑1 (MQ=255)
                       ccTATTATCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCa                                                                                                                           <  5:130311/149‑1 (MQ=255)
                        cTATTATCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAg                                                                                                                          >  7:3893/1‑149 (MQ=255)
                          attatCTGAATGCCTGTGCAGGTGCTATCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCACTCTCCGGGGGCGATTTCAGATCAGGc                                                                                                                        >  7:139834/1‑149 (MQ=255)
                           ttatCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAgg                                                                                                                         <  5:74943/147‑1 (MQ=255)
                             atCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCCGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTTGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGGCtt                                                                                                                      <  4:614/148‑1 (MQ=255)
                             atCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGGCTTc                                                                                                                     >  1:284737/1‑149 (MQ=255)
                              tCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCggagagggggcgatagaat                                                                                                                               <  4:326410‑M1/138‑20 (MQ=255)
                              tCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCggagagggggcgatagaat                                                                                                                               >  3:326410‑M1/1‑119 (MQ=255)
                                tGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGGCTTCtgt                                                                                                                  >  5:296866/1‑149 (MQ=255)
                                  aaTGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGGCTTCtgt                                                                                                                  <  2:284737/147‑1 (MQ=255)
                                  aaTGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGGCTTCTGTGc                                                                                                                <  6:372834/149‑1 (MQ=255)
                                      ccTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGGCTTCTGTGCCTgg                                                                                                            <  2:333336/149‑1 (MQ=255)
                                       cTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGt                                                                                                           <  7:160126/149‑1 (MQ=255)
                                             aGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGAtt                                                                                                      >  3:55768/1‑148 (MQ=255)
                                               gTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCAt                                                                                                   >  4:254131/1‑149 (MQ=255)
                                                ttcTTTCCGCGCCCGTGATATTGAGCTCTGGCTGGTCGTGTTCTCACGCTGTGTTGAAAACGGCCTTCGAGTGGCGCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCAt                                                                                                   <  4:233873/146‑1 (MQ=255)
                                                tGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATg                                                                                                  <  2:389106/149‑1 (MQ=255)
                                                   tttCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCa                                                                                               >  1:383904/1‑149 (MQ=255)
                                                          gcCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTtctc                                                                                        <  2:184630/149‑1 (MQ=255)
                                                           cccGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCg                                                                                       <  6:296866/149‑1 (MQ=255)
                                                               tGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTgcc                                                                                   <  7:178043/149‑1 (MQ=255)
                                                                gATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGa                                                                                                                              <  7:127707/105‑1 (MQ=255)
                                                                gATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGa                                                                                                                              >  8:127707/1‑105 (MQ=255)
                                                                    ttCAGCTCTGGCAGGTCGTGTTCTCACGAGGTGTTCAAACCGGCCATCGAGTGGCTCCCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATATAAAATCAGGCTTCTCTACCACGTTAATTCATGGAAATTTCTAGTgccga                                                                                 >  8:352695/1‑145 (MQ=255)
                                                                      cAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGca                                                                            >  5:223826/1‑149 (MQ=255)
                                                                       aGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGcac                                                                           >  3:18646/1‑149 (MQ=255)
                                                                            tGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCggagagggggcgatagaatagc                                                                                                                            >  1:364761‑M1/1‑73 (MQ=255)
                                                                            tGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCggagagggggcgatagaatagc                                                                                                                            <  2:364761‑M1/95‑23 (MQ=255)
                                                                              gCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGGCTTCtgt                                                                                                                  <  3:283193/103‑1 (MQ=255)
                                                                              gCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGGCTTCtgt                                                                                                                  >  4:283193/1‑103 (MQ=255)
                                                                                aGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGCTCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTAc                                                                  >  3:268774/1‑149 (MQ=255)
                                                                                 ggTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTAcc                                                                 <  6:223826/149‑1 (MQ=255)
                                                                                      tgtTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATc                                                            <  4:55768/149‑1 (MQ=255)
                                                                                      tgtTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATc                                                            <  4:18646/149‑1 (MQ=255)
                                                                                        ttCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTa                                                          <  2:31031/149‑1 (MQ=255)
                                                                                           tcACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTc                                                                                                                                 <  7:41914/75‑1 (MQ=255)
                                                                                           tcACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTc                                                                                                                                 >  8:41914/1‑75 (MQ=255)
                                                                                                 ggTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCt                                                 <  8:234715/149‑1 (MQ=255)
                                                                                                   tgtTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGc                                                   <  1:241336/145‑1 (MQ=255)
                                                                                                   tgtTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGc                                                   >  2:241336/1‑145 (MQ=255)
                                                                                                       gAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGttt                                           >  7:95669/1‑149 (MQ=255)
                                                                                                         aaaCGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGTTtgt                                         <  7:84644/149‑1 (MQ=255)
                                                                                                                    gAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGTTTGTGGATCGAttt                               <  8:95669/148‑1 (MQ=255)
                                                                                                                     aGTGGCTCGCTACAGGCTATTCTATCGGCCCCTCTCCGGGGGCGATTTCAGATCAGGCTTCTGGGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGTTTGGGGATCGATTTCa                             <  1:326221/149‑1 (MQ=255)
                                                                                                                          cTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGTTTGTGGATCGATTTCAATGtt                        <  2:244139/149‑1 (MQ=255)
                                                                                                                               tAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGGTTGTGGATCGATTTCAATGTTGAcgc                   >  5:258125/1‑149 (MQ=255)
                                                                                                                               tAAAGGCTATTCTATCGCCCCCACTACGGGGGCGATTTCAGATCAGGCTTCTGTGACTAGTTGATTCATGGCATTTTCTCGTGCGGACGGCACACGTTCTAGCGTATCTACCACTGCCTGAGTTTGTGGATCGATTTCAATGTTGAcgc                   >  2:257254/1‑149 (MQ=255)
                                                                                                                                   ggCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGTTTGTGGATCGATTTCAATGTTGACGCGTgc               >  1:62638/1‑149 (MQ=255)
                                                                                                                                    gCTATTCTATCGCCCCCTCTCCgggggcgatagaatagcctttagcgagccactcgaaggccgttttcaacaccgcgtgagaacacgacctgcca                                                                    <  2:364761‑M2/95‑74 (MQ=255)
                                                                                                                                    gCTATTCTATCGCCCCCTCTCCgggggcgatagaatagcctttagcgagccactcgaaggccgttttcaacaccgcgtgagaacacgacctgcca                                                                    >  1:364761‑M2/1‑22 (MQ=255)
                                                                                                                                      tATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGTCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACCCGATCTACCGTATCTACCACTGCCTGAGTTTGTGGATCGATTTCAATGTTGACGCGTgcgc             >  6:338186/1‑148 (MQ=255)
                                                                                                                                       aTTCTATCGCCCCCTCTCCgggggcgatagaatagcctttagcgagccactcgaaggccgttttcaacaccgcgtgagaacacgacctgccagagctgaatatcacgggcgcggaaagcacctgcacaggcattcaga                      >  3:326410‑M2/1‑19 (MQ=255)
                                                                                                                                       aTTCTATCGCCCCCTCTCCgggggcgatagaatagcctttagcgagccactcgaaggccgttttcaacaccgcgtgagaacacgacctgccagagctgaatatcacgggcgcggaaagcacctgcacaggcattcaga                      <  4:326410‑M2/138‑120 (MQ=255)
                                                                                                                                               gCCCCCggagagggggcgatagaatagcctttagcgagccactcgaaggccgttttcaacaccgcgtgagaacacgtcctgccagagctgaatatcacgggcgcggaaagcacctgcacaggcattcagataataggtaaacattcgt    <  1:44554‑M1/148‑143 (MQ=255)
                                                                                                                                               gCCCCCggagagggggcgatagaatagcctttagcgagccactcgaaggccgttttcaacaccgcgtgagaacacgacctgccagagctgaatatcacgggcgcggaaagcacctgcacaggcattcagataataggtaaacattcgtt   >  5:132400‑M1/1‑6 (MQ=255)
                                                                                                                                               gCCCCCggagagggggcgatagaatagcctttagcgagccactcgaaggccgttttcaacaccgcgtgagaacacgacctgccagagctgaatatcacgggcgcggaaagcacctgcacaggcattcagataataggtaaacattcgt    <  8:178043‑M1/148‑143 (MQ=255)
                                                                                                                                               gCCCCATCTCCGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCAAGCACACGTTCTACCGTATCTACCACTGCCTGTGTGTGTGGAGCGATTTCAATGTTGACGCGTGCGCCAAGtttttt   <  7:352695/149‑1 (MQ=255)
                                                                                                                                                cccccggagagggggcgatagaatagcctttagcgagccactcgaaggccgttttcaacaccgcgtgagaacacgacctgccagagctgaatatcacgggcgcggaaagcacctgcacaggcattcagataataggtaaacattcgtt   >  3:221163‑M1/1‑5 (MQ=255)
                                                                                                                                                cccccTCTCCGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCCCTGCCTGAGTTTGTGGATCGATTTCAATGTTGACGCGTGCGCCAAGTTTTttc  >  7:175615/1‑149 (MQ=255)
                                                                                                                                                cccccTCTCCGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGTTTGTGGATCGATTTCAATGTTGACGCGTGCGCCAAGTTTTttc  >  2:124459/1‑149 (MQ=255)
                                                                                                                                                cccccTCTCCGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGTTTGTGGATCGATTTCAATGTTGACGCGTGCGCCAAGTTTTttc  >  1:10775/1‑149 (MQ=255)
                                                                                                                                                cccccTCTCCGGGGGCGATTTCAGATCAGGCTTCTGAGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGTTTGTGGATCGATTTCAATGTTGACGCGTGCGCCAAGTTTTttc  >  8:287366/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                
TGAACGCTTTAAACGAATGTTTACCTATTATCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGTTTGTGGATCGATTTCAATGTTGACGCGTGCGCCAAGTTTTTTC  >  NC_000913/1742432‑1742724

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.