New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4024476 =	42 (0.890)	5 (0.110)	5/254	5.3	11.3%	coding (346/489 nt)	rfaH	transcription antitermination protein
	?	NC_000913	4024495 =	39 (0.870)					coding (327/489 nt)	rfaH	transcription antitermination protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGTATTCTTCACACTGTGCTTAATCTCTTTATTAATAAGATTAAGCAATAGCATGGAGCGAGCCTCACCATCGGGTTCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGT  >  NC_000913/4024351‑4024643                                                                                                                                                 |                                                                                                                                                     ggTATTCTTCACACTGTGCTTAATCTCTTTATTAATAAGATTAAGCAATAGCATGGAGCGAGCCTCACCATCGGGTTCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTg                                                                                                                                                  >  1:57888/1‑149 (MQ=255)  gTATTCTTCACACTGTGCTTAATCTCTTTATTAATAAGATTAAGCAATAGCATGGAGCGAGCCTCACCATCGGGTTCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGc                                                                                                                                                 <  6:941/149‑1 (MQ=255)          cacaCTGTGCTTAATCTCTTTATTAATAAGATTAAGCAATAGCATGGAGCGAGCCTCACCATCGGGTTCGGTGAAAATGTCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGAt                                                                                                                                            >  7:39358/1‑146 (MQ=255)          cacaCTGTGCTTAATCTCTTTATTAATAAGATTAAGCAATAGCATGGAGCGAGCCTCACCATCGGGTTCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGAt                                                                                                                                            <  8:39358/146‑1 (MQ=255)           acacTGTGCTTAATCTCTTTATTAATAAGATTAAGCAATAGCATGGAGCGAGCCTCACCATCGGGTTCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGa                                                                                                                                         <  7:8283/148‑1 (MQ=255)            cacTGTGCTTCATCTCTTTATTCATAAGATTAAGCATTCGCATGGAGCGAGCCGCACCAACGGGTTCGGTGAAACTGGCCTGAACGCCTGCGAACGCGCCTTCGCTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACa                                                                                                                                       <  7:174986/149‑1 (MQ=255)            cacTGTGCTTAATCTCTTTATTAATAAGATTAAGCAATAGCATGGAGCGAGCCTCACCATCGGGTTCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACa                                                                                                                                       <  5:122820/149‑1 (MQ=255)                      aaTCTCTTTATTAATAAGATTAAGCAATAGCATGGAGCGAGCCTCACCATCGGGTTCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCg                                                                                                                             >  5:32897/1‑149 (MQ=255)                      aaTCTCTTTATTAATAAGATTAAGCAATAGCATGGAGCGAGCCTCACCATCGGGTTCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCg                                                                                                                             >  2:185837/1‑149 (MQ=255)                         ctctTTATTAATAAGATTAAGCAATAGCATGGAGCGAGCCTCACCATCGGGTTCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGtt                                                                                                                          >  1:26887/1‑149 (MQ=255)                            tttATTAATAAGATTAATCAATAGCATGGAGCGAGCCTCACCATCGGGTTCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGttt                                                                                                                         <  2:26887/147‑1 (MQ=255)                            tttATTAATAAGATTAAGCAATAGCATGGAGCGAGCCTCACCATCGGGTTCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGtt                                                                                                                          <  2:57888/146‑1 (MQ=255)                              tattaATAAGATTAAGCAATAGCATGGAGCGAGCCTCACCATCGGGTTCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAAt                                                                                                                                     >  6:138679/1‑133 (MQ=255)                              tattaATAAGATTAAGCAATAGCATGGAGCGAGCCTCACCATCGGGTTCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAAt                                                                                                                                     <  5:138679/133‑1 (MQ=255)                              tattaATAAGAATAATCAATACCAAGGAGCGAGCCTCACCATCGGATTCGGTGAAAATGCCCAGAAAGCCTTCGAACTCGCCTTCGGTAATAATCACCTTAACACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTtata                                                                                                                      >  6:119532/1‑148 (MQ=255)                               attaATAAGATTAAGCAATAGCATGGAGCGAGCCTCACCATCGGGTTCGGTGAAAATGGACTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTtatata                                                                                                                    >  7:24637/1‑149 (MQ=255)                                    taaGATTAAGCAATAGCATGGAGAGAGCCTCACCATCGGGTTCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTACGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGa                                                                                                                >  2:155614/1‑148 (MQ=255)                                       gATTAAGCAATAGCATGGAGCGAGCCTCACCATCGGGTTCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGc                                                                                                            >  6:156929/1‑149 (MQ=255)                                        aTTAAGCAATAGCATGGAGCGAGCCTCACCATCGGGTTCGGTGAAAATGGCCTGAAAGCCTTCGAATGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTtat                                                                                                                       >  2:240396/1‑137 (MQ=255)                                        aTTAAGCAATAGCATGGAGCGAGCCTCACCATCGGGTTCGGTGAAAATGGCCTGAAAGCCTTCGAATGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTtat                                                                                                                       <  1:240396/137‑1 (MQ=255)                                            aGCAATAGCATGGAGCGAGCCTCACCATCGGGTTCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCtgat                                                                                                        <  5:156929/148‑1 (MQ=255)                                              cAATAGCATGGAGCGAGCCTCACCATCGGGTTCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGaa                                                                                                     <  4:50596/149‑1 (MQ=255)                                                                      aTCGGGTTCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTg                                                                             >  5:76119/1‑149 (MQ=255)                                                                       tCGGGTTCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTgg                                                                            <  6:32897/149‑1 (MQ=255)                                                                                            tGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTtata                                                                                                                      >  5:53761/1‑86 (MQ=255)                                                                                            tGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTtata                                                                                                                      <  6:53761/86‑1 (MQ=255)                                                                                                             gcCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCggg                                      >  4:168438/1‑149 (MQ=255)                                                                                                             gcCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCggg                                      <  1:185837/149‑1 (MQ=255)                                                                                                                  cGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCTAAGCGCACGAAGTGGCTGACACCGCGGGTcgc                                  <  6:76119/148‑1 (MQ=255)                                                                                                                   ggTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGTTGATGAATAACCGCCGATTGGACTATCGCTGGCGACGCGCCAAAGCGCACTAAGTGGCTGACACCGCGGGTcgcg                                 <  1:155614/148‑1 (MQ=255)                                                                                                                         aatCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGac                                              <  6:135896/129‑1 (MQ=255)                                                                                                                         aatCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGac                                              >  5:135896/1‑129 (MQ=255)                                                                                                                          atCACCTTATCACCCGGATAAGGGGTTGCCTGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAg                          <  5:72198/148‑1 (MQ=255)                                                                                                                           tCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTc                        <  3:168438/149‑1 (MQ=255)                                                                                                                                   tCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTAt                 >  3:134806/1‑148 (MQ=255)                                                                                                                                   tCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTAt                 <  8:24637/148‑1 (MQ=255)                                                                                                                                      cccGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAAt             >  4:119169/1‑149 (MQ=255)                                                                                                                                      cccGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAAt             >  2:222074/1‑149 (MQ=255)                                                                                                                                       ccGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAAt             >  8:2842/1‑148 (MQ=255)                                                                                                                                                 ggTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGTTAGCTGATGATTATCCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGt  <  5:119532/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                     GGTATTCTTCACACTGTGCTTAATCTCTTTATTAATAAGATTAAGCAATAGCATGGAGCGAGCCTCACCATCGGGTTCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGT  >  NC_000913/4024351‑4024643

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.