New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3376260	29 (0.940)	5 (0.180)	5/248	2.9	15.3%	intergenic (+24/+19)	dcuD/sspB	putative transporter/ClpXP protease specificity enhancing factor
	?	NC_000913	= 3376265	29 (1.030)					intergenic (+29/+14)	dcuD/sspB	putative transporter/ClpXP protease specificity enhancing factor
Rejected: Frequency below/above cutoff threshold.

GTGGTCGTTACGTCAGGAATTGCAGGCGTTTCGCCTTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAGTGTCATCATCGTGATCTGGCTTGTCGCCATCAATAACCGACATAACGGTTTCGTTGTCTGCCGAT  >  NC_000913/3376117‑3376411                                                                                                                                                     |                                                                                                                                                   gtggtCGTTACGTCAGGAATTGCAGGCGTTTCGCCTTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTg                                                                                                                                                    >  1:47849/1‑149 (MQ=255)           cGTCAGGAATTGCAGGCGTTTCGCCTTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGggcctgtttt                                                                                                                                          >  2:146719‑M2/1‑139 (MQ=255)            gTCAGGTATTGCAGGCGTTTCGCCTTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGggcctgttttg                                                                                                                                         <  6:93828‑M2/149‑12 (MQ=255)            gTCAGGAATTGCAGGCGTTTCGCCTTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGggcctgttttg                                                                                                                                         <  5:36345‑M2/149‑12 (MQ=255)                 gAATTGCAGGCGTTTCGCCTTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTa                                                                                                                                    >  7:5268/1‑149 (MQ=255)                       cAGGCGTTTCGCCTTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTca                                                                                                                               <  7:122464/148‑1 (MQ=255)                                 gCCTTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAAt                                                                                                                    >  1:76205/1‑149 (MQ=255)                                  ccTTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGggcctgttttgtctttttaatgacttaataaaa                                                                                                                   >  2:47849‑M2/1‑116 (MQ=255)                                    ttttGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGcc                                                                                                                 >  7:86071/1‑149 (MQ=255)                                    ttttGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGAATGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGcc                                                                                                                 >  7:49053/1‑149 (MQ=255)                                      ttGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCg                                                                                                                <  8:86071/148‑1 (MQ=255)                                           gtggtgAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGac                                                                                                          <  8:5268/149‑1 (MQ=255)                                               tgAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGggcctgtt                                                                                                                                            <  6:117063‑M2/111‑9 (MQ=255)                                                   gCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCgt                                                                                                  >  5:66252/1‑149 (MQ=255)                                                      gACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGATCGACCACCGCgtggt                                                                                               >  7:46306/1‑149 (MQ=255)                                                       aCAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCgtggtg                                                                                              <  6:66252/149‑1 (MQ=255)                                                         aGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGgg                                                                                                                                                  >  1:27677‑M2/1‑93 (MQ=255)                                                         aGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGgg                                                                                                                                                  <  2:27677‑M2/95‑3 (MQ=255)                                                                 ccATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAgg                                                                                    <  5:93828/149‑1 (MQ=255)                                                                       cAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATc                                                                              <  6:36345/149‑1 (MQ=255)                                                                        aGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAAc                                                                                                                           <  7:39310/103‑1 (MQ=255)                                                                        aGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAAc                                                                                                                           >  8:39310/1‑103 (MQ=255)                                                                          tCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTc                                                                           <  2:76205/149‑1 (MQ=255)                                                                                        aaTATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAGTGtcat                                                             <  3:89536/149‑1 (MQ=255)                                                                                            tGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAGTGTCatcatc                                                         >  7:2322/1‑149 (MQ=255)                                                                                            tGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGATCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAGTGTCatcatc                                                         <  8:46306/149‑1 (MQ=255)                                                                                                  ccACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGggcctgttttgtctttttaatgacttaataaaatagcgtgattgtggcaatcatattcaccacgaaaccgactgccatgg                                                                    >  6:123115‑M2/1‑52 (MQ=255)                                                                                                  ccACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGggcctgttttgtctttttaatgacttaataaaatagcgtgattgtggcaatcatattcaccacgaaaccgactgccatgg                                                                    <  5:123115‑M2/132‑81 (MQ=255)                                                                                                    acaATCACGCTGTTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGggcctgttttgtctttttaatgacttaataaaacagcgtgattgtggcaatcatattcaccacgacaccgactgccatggggatcgctgtccgcttcac                                                 <  8:119982‑M2/149‑100 (MQ=255)                                                                                                     caATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAGTGTCATCATCGTGATCTgg                                                <  6:91837/149‑1 (MQ=255)                                                                                                     caATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAGTGTCATCATCGTGATCTgg                                                >  6:67003/1‑149 (MQ=255)                                                                                                           cGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGACGGTCGACCACCGCGTGGTGGCTGCGGAGGTGCATAGTCAGGATTAGTGTCATCATCGTGATCTTGCTTGTc                                          >  7:37549/1‑149 (MQ=255)                                                                                                                ttttATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAGTGTCATCATCGTGATCTGGCTTGTCGCCAt                                     <  8:49053/149‑1 (MQ=255)                                                                                                                ttttATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAGTGTCATCATCGTGATCTGGCTTGTCGCCAt                                     >  2:155995/1‑149 (MQ=255)                                                                                                                     ttaAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAGTGTCATCATCGTGATCTGGCTTGTCGCCATCAAt                                 >  3:116286/1‑148 (MQ=255)                                                                                                                                    taCAAAACAGGCCCAGGCGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAGTGTCATCATCGTGATCTGGCTTGTCGCCATCAATAAc                              <  6:133985/135‑1 (MQ=255)                                                                                                                                    taCAAAACAGGCCCAGGCGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAGTGTCATCATCGTGATCTGGCTTGTCGCCATCAATAAc                              >  5:133985/2‑136 (MQ=255)                                                                                                                                    gACAAAACAGGCCGCCTGGGCCTGTTTTGTATTAATACACAACGCGTAATGCCGGTCGACCACCCCCTGCAGGCTGCGGAGGATCATCGTCAGGATGAGAGTCATCATCGTGAACTCCCTTGTCGCCATCAATAACCGACATAACGGtt                 >  4:49015/1‑149 (MQ=255)                                                                                                                                       aaaaCAGGCCGCCTGggcctgttttgtctttttaatgacttaataaaatagcgtgattgtggcaatcatattcaccacgaaaccgactgccatggggatcgctgtccgcttcaccaccgcaaaaggcgaaacgcctgcaattcctgacg              <  5:136348‑M2/149‑135 (MQ=255)                                                                                                                                                cgccTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAGTGTCATCATCGTGATCTGGCTTGTCGCCATCAATAACCGACATAACGGTTTCGTTGTCTGcc     >  1:121467/1‑149 (MQ=255)                                                                                                                                                   cTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAGTGTCATCATCGTGATCTGGCTTGTCGCCATCAATAACCGACATAACGGTTTCGTTGTCTGCCGAt  <  1:155995/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   GTGGTCGTTACGTCAGGAATTGCAGGCGTTTCGCCTTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAGTGTCATCATCGTGATCTGGCTTGTCGCCATCAATAACCGACATAACGGTTTCGTTGTCTGCCGAT  >  NC_000913/3376117‑3376411

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.