New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4459603	24 (0.660)	6 (0.180)	6/226	2.3	20.1%	pseudogene (114/366 nt)	cybC	pseudogene, truncated cytochrome b562; cytochrome b(562)
	?	NC_000913	= 4459617	25 (0.730)					pseudogene (128/366 nt)	cybC	pseudogene, truncated cytochrome b562; cytochrome b(562)

GGCAGTGTGAAGGATGAAGTGTAAATAAAAAAGGAACTATTCTTGCAGTCTCCTCGTTGGTATTCAGTTCGGCGTCATTTGCTGCTGATCTCGAAGACAATATGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4459452‑4459603 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taacgcgTCTTTGACTTGCGCCGCGTTATCGGCTTTTTCGACCACTTTTAAATTGTCGTTGAGGGTTTCCATATTGTCTTCGAGATCAGCAGCAAATGACGCCGAACTGAATACCAACGAGGAGACTGCAAGAATAGTTCCTTTTTTATTTAC  <  NC_000913/4459617‑4459472                                                                                                                                                                                                                                                                                                            GGCAGTGTGAAGGATGAAGTGTAAATAAAAAAGGAACTATTCTTGCAGTCTCCTCGTTGGTATTCAGTTCGGCGTCATTTGCTGCTGATCTCGAAGACAATATGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAAC                                                                                                                                                       >  6:15814/1‑149                                                                                   TGCTGATCTCGAAGACAATATGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGTCTTTGACTTGCGCCGCGTTATCGGCTTTTT                                                                                                                     <  1:65791/101‑1                                                                                   TGCTGATCTCGAAGACAATATGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGTCTTTGACTTGCGCCGCGTTATCGGCTTTTT                                                                                                                     >  2:65791/1‑101                                                                                             GAAGACAATATGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGTCTTTGACTTGCGCCGC                                                                                                                                   <  7:157149/77‑1                                                                                             GAAGACAATATGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGTCTTTGACTTGCGCCGC                                                                                                                                   >  8:157149/1‑77                                                                                                     TATGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGTCTTTGACTTGCGCCGCGTTATC                                                                                                                             >  1:47365/1‑75                                                                                                     TATGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGTCTTTGACTTGCGCCGCGTTATC                                                                                                                             <  2:47365/75‑1                                                                                                                                                     CGCGTCTTTGACTTGCGCCGCGTTATCGGCTTTTTCGACCACTTTTAAATTGTCGTTGAGGGTTTCCATATTGTCTTCGAGATCAGCA                                                                >  1:64105/1‑88                                                                                                                                                     CGCGTCTTTGACTTGCGCCGCGTTATCGGCTTTTTCGACCACTTTTAAATTGTCGTTGAGGGTTTCCATATTGTCTTCGAGATCAGCA                                                                <  2:64105/88‑1                                                                                                                                                      GCGTCTTTGACTTGCGCCGCGTTATCGGCTTTTTCGACCACTTTTAAATTGTCGTTGAGGGTTTCCATATTGTCTTCGAGATCAGCAGCAAATGACGCCGAACTGAATACCAACGAGGAGACTGCAAGAATAGTTCCTTTTTTATTTAC  <  2:7855/149‑1                                                                                                                                                                                                                                                                                                            GGCAGTGTGAAGGATGAAGTGTAAATAAAAAAGGAACTATTCTTGCAGTCTCCTCGTTGGTATTCAGTTCGGCGTCATTTGCTGCTGATCTCGAAGACAATATGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4459452‑4459603 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taacgcgTCTTTGACTTGCGCCGCGTTATCGGCTTTTTCGACCACTTTTAAATTGTCGTTGAGGGTTTCCATATTGTCTTCGAGATCAGCAGCAAATGACGCCGAACTGAATACCAACGAGGAGACTGCAAGAATAGTTCCTTTTTTATTTAC  <  NC_000913/4459617‑4459472

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.