New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 345066828 (0.770)7 (0.200) 7/228 2.1 20.4% coding (697/822 nt) rplB 50S ribosomal subunit protein L2
?NC_000913 = 3450673 28 (0.810)coding (692/822 nt) rplB 50S ribosomal subunit protein L2

CTCTAAAATTATTTGCTACGGCGACGTACGATGAATTTATCAGTACGCTTGTTGCTGCGGGTCTTCTTACCTTTGGTCTGAACGCCCCACGGAGTTACCGGGTGCTTACCAAAGTTACGACCTTCACCACCACCATGTGGGTGGTCTACCGGGTTCATCGCGGTACCGCGAACGGTCGGACGAACACCACGCCAGCGTGCAGCACCTGCTTTACCCAGAACGCGCAGCATATGCTCAGCATTGCCAACTTCGCCCAGAGTTGCACGGCAGTCTGCTTCT  >  NC_000913/3450535‑3450813
                                                                                                                                     |                                                                                                                                                 
ctctAAAATTATTTGCTACGGCGACGTACGATGAATTTATCAGTACGCTTGTTGCTGCGGGTCTTCTTACCTTTGGTCTGAACGCCCCACGGAGTTACCGGGTGCTTACCAAAGTTACGACCTT‑‑‑CACCACCcacatggtggtggtgaag                                                                                                                                 <  8:166170‑M1/149‑19 (MQ=255)
           tttGCTACGGCGACGTACGATGAATTTATCAGTACGCTTGTTGCTGCGGGTCTTCTTACCTTTGGTCTGAACGCCCCACGGAGTTACCGGGTGCTTACCAAAGTTACGACCTTCACCACCACCATGTGGGTGGTCTACCGGGTTCATcg                                                                                                                         >  5:44621/1‑149 (MQ=255)
                          tACGATGAATTTATCAGTACGCTTGTTGCTGCGGGTCTTCTTACCTTTGGTCTGAACGCCCCACGGAGTTACCGGGTGCTTACCAAAGTTACGACCTTCACCACCACCATGTGGGTGGTCTACCGGGTTCATCGCGGTACCGCGAACgg                                                                                                          >  8:150206/1‑149 (MQ=255)
                             gATGAATTTATCAGTACGCTTGTTGCTGCGGGTCTTCTTACCTTTGGTCTGAACGCCCCACGGAGTTACCGGGTGCTTACCAAAGTTACGACCTTCACCACCACCATGTGGGTGGTCTACCGGGTTCATCGCGGTACCGCGaa                                                                                                             <  1:154419/143‑1 (MQ=255)
                             gATGAATTTATCAGTACGCTTGTTGCTGCGGGTCTTCTTACCTTTGGTCTGAACGCCCCACGGAGTTACCGGGTGCTTACCAAAGTTACGACCTTCACCACCACCATGTGGGTGGTCTACCGGGTTCATCGCGGTACCGCGaa                                                                                                             >  2:154419/1‑143 (MQ=255)
                                               cTTGTTGCTGCGGGTCTTCTTACCTTTGGTCTGAACGCCCCACGGAGTTACCGGGTGCTTACCAAAGTTACGACCTTCACCACCACCATGTGGGTGGTCTACCGGGTTCATCGCGGTACCGCGAACGGTCGGACGAACACCACGCCAGc                                                                                     <  7:150206/149‑1 (MQ=255)
                                                ttgttgCTGCGGGTCTTCTTACCTTTGGTCTGAACGCCCCACGGAGTTACCGGGTGCTTACCAAAGTTACGACCTTCACCACCACCATGTGGGTGGTCTACCGGGTTCATCGCGGTACCGCGAACGGTCg                                                                                                       <  1:123596/130‑1 (MQ=255)
                                                ttgttgCTGCGGGTCTTCTTACCTTTGGTCTGAACGCCCCACGGAGTTACCGGGTGCTTACCAAAGTTACGACCTTCACCACCACCATGTGGGTGGTCTACCGGGTTCATCGCGGTACCGCGAACGGTCg                                                                                                       >  2:123596/1‑130 (MQ=255)
                                                ttgttgCTGCGGGTCTTCTTACCTTTGGTCTGAACGCCCCACGGAGTTACCGGGTGCTTACCAAAGTTACGACCTTCACCACCACCATGTGGGTGGTCTACCGGGTTCATCGCGGTACCGCGAACGGTCGGACGACCACCACGCCAGCg                                                                                    >  7:120227/1‑149 (MQ=255)
                                                       tgcGGGTCTTCTTACCTTTGGTCTGAACGCCCCACGGAGTTACCGGGTGCTTACCAAAGTTACGACCTTCACCACCACCATGTGggtggtggtgaaggtc                                                                                                                              >  7:124463‑M2/1‑84 (MQ=255)
                                                       tgcGGGTCTTCTTACCTTTGGTCTGAACGCCCCACGGAGTTACCGGGTGCTTACCAAAGTTACGACCTTCACCACCACCATGTGggtggtggtgaaggtc                                                                                                                              <  8:124463‑M2/100‑17 (MQ=255)
                                                               ttcttACCTTTGGTCTGAACGCCCCACGGAGTTACCGGGTGCTTACCAAAGTTACGACCTTCACCACCACCATGTGg                                                                                                                                             >  8:45882‑M2/1‑76 (MQ=255)
                                                               ttcttACCTTTGGTCTGAACGCCCCACGGAGTTACCGGGTGCTTACCAAAGTTACGACCTTCACCACCACCATGTGg                                                                                                                                             <  7:45882‑M2/77‑2 (MQ=255)
                                                                 cttACCTTTGGTCTGAACGCCCCACGGAGTTACCGGGTGCTTACCAAAGTTACGACCTTCACCACCACCATGTGGGTGGTCTACCGGGTTCATCGCGGTACCGCGAACGGTCGGACGAACACCACGCCAGCGTGCAGCACCTGc                                                                        <  4:1434/144‑1 (MQ=255)
                                                                 cttACCTTTGGTCTGAACGCCCCACGGAGTTACCGGGTGCTTACCAAAGTTACGACCTTCACCACCACCATGTGGGTGGTCTACCGGGTTCATCGCGGTACCGCGAACGGTCGGACGAACACCACGCCAGCGTGCAGCACCTGc                                                                        >  3:1434/1‑144 (MQ=255)
                                                                    aCCTTTGGTCTGAACGCCCCACGGAGTTACCGGGTGCTTACCAAAGTTACGACCTTCACCACCACCcacatggtggtggtgaa                                                                                                                                  >  6:116393‑M1/1‑66 (MQ=255)
                                                                    aCCTTTGGTCTGAACGCCCCACGGAGTTACCGGGTGCTTACCAAAGTTACGACCTTCACCACCACCcacatggtggtggtgaa                                                                                                                                  <  5:116393‑M1/83‑18 (MQ=255)
                                                                     ccTTTGGTCTGAACGCCCCACGGAGTTACCGGGTGCTTACCAAAGTTACGACCTTCACCACCACCATGTGGGTGGTCTACCGGGTTCATCGCGGTACCGCGAACGGTCGGACGAACACCACGCCAGCGTGCAGCACCTGCTTTAcc                                                                  >  7:25946/1‑146 (MQ=255)
                                                                      cTTTGGTCTGAACGCCCCACGGAGTTACCGGGTGCTTACCAAAGTTACGACCTTCACCACCACCATGTGGGTGGTCTACCGGGTTCATCGCGGTACCGCGAACGGTCGGACGAACACCACGCCAGCGTGCAGCACCTGCTTTACCCAg                                                               >  5:805/1‑148 (MQ=255)
                                                                      cTTTGGTCTGAACGCCCCACGGAGTTACCGGGTGCTTACCAAAGTTACGACCTTCACCACCACCATGTGGGTGGTCTACCGGGTTCATCGCGGTACCGCGAACGGTCGGACGAACACCACGCCAGCGTGCAGCACCTGCTTTACCCAg                                                               >  3:164288/1‑148 (MQ=255)
                                                                           gTCTGAACGCCCCACGGAGTTACCGGGTGCTTACCAAAGTTACGACCTTCACCACCACCATGTGggtg                                                                                                                                          <  3:155367‑M2/68‑5 (MQ=255)
                                                                           gTCTGAACGCCCCACGGAGTTACCGGGTGCTTACCAAAGTTACGACCTTCACCACCACCATGTGggtg                                                                                                                                          >  4:155367‑M2/1‑64 (MQ=255)
                                                                           gTCTGAACGCCCCACGGAGTTACCGGGTGCTTACCAAAGTTACGACCTTCACCACCACCATGTGGGTGGTCTACCGGGTTCATCGCGGTACCGCGAACGGTGGGAc                                                                                                    >  7:28645/1‑106 (MQ=255)
                                                                           gTCTGAACGCCCCACGGAGTTACCGGGTGCTTACCAAAGTTACGACCTTCACCACCACCATGTGGGTGGTCTACCGGGTTCATCGCGGTACCGCGAACGGTCGGAc                                                                                                    <  8:28645/106‑1 (MQ=255)
                                                                            tCTGAACGCCCCACGGAGTTACCGGGTGCTTACCAAAGTTACGACCTTCACCACCACCATGTGGGTGGTCTACCGGGTTCATCGCGGTACCGCGAACGGTCGGACGAACACCACGCCAGCGTGCAGCACCTGCTTTACCCAGAAcgcg                                                         >  3:92499/1‑148 (MQ=255)
                                                                                aaCGCCCCACGGAGTTACCGGGTGCTTACCAAAGTTACGACCTTCACCACCACCATGTGGGTGGTCTACCGGGTTCATCGCGGTACCGCGAACGGTCGGACGAACACCACGCCAGCGTGCAGCACCTGCTTTACCCAGAACGCgcagc                                                     <  8:25946/148‑1 (MQ=255)
                                                                                   gCCCCACGGAGTTACCGGGTGCTTACCAAAGTTACGACCTTCACCACCACCcacatggtggtgg                                                                                                                                      <  8:102720‑M1/64‑14 (MQ=255)
                                                                                   gCCCCACGGAGTTACCGGGTGCTTACCAAAGTTACGACCTTCACCACCACCcacatggtggtgg                                                                                                                                      >  7:102720‑M1/1‑51 (MQ=255)
                                                                                      cctcGGAGTTACCGGGTGCTTACCAAAGTTACGACCTTCACCACCACCATGTGGGTGGTCTACCGGGTTCATCGCGGTACCGCGAACGGTCGGACGAACACCACGCCAGCGTGCAGCACCTGCTTTACCCAGAACGCGCAGCATATGCt                                              <  4:92499/146‑1 (MQ=255)
                                                                                                    ggTGCTTACCAAAGTTACGACCTTCACCACCACCATGTGGGTGGTCTACCGGGTTCATCGCGGTACCGCGAACGGTCGGACGAACACCACGCCAGCGTGCAGCAc                                                                            <  4:59655/105‑1 (MQ=255)
                                                                                                    ggTGCTTACCAAAGTTACGACCTTCACCACCACCATGTGGGTGGTCTACCGGGTTCATCGCGGTACCGCGAACGGTCGGACGAACACCACGCCAGCGTGCAGCAc                                                                            >  3:59655/1‑105 (MQ=255)
                                                                                                      tGCTTACCAAAGTTACGACCTTCACCACCACCATGTGGGTGGTCTACCGGGTTCATCGCGGTACCGCGAACGGTCGGACGAACACCACGCCAGCGTGCAGCACCTGCTTAACCCAGAACGCGCAGCATATGCTCAGCAGTGCCAACTTc                              <  8:120227/149‑1 (MQ=255)
                                                                                                           aCCAAAGTTACGACCTTCACCACCACCATGTGGGTGGTCTACCGGGTTCATCGCGGTACCGCGAACGGTCGGACGAACACCACGCCAGCGTGCAGCACCTGCTTTACCCAGAACGCGCAGCATATGCTCAGCATTGCCAACTTCGcc                           >  1:137455/1‑147 (MQ=255)
                                                                                                             cAAAGTTACGACCTTCACCACCACCATGTGGGTGGTCTACCGGGTTCATCGCGGTACCGCGAACGGTCGGACGAACACCACGCCAGCGTGCAGCACCTGCTTTACCCAGAACGCGCAGCATATGCTCAGCATTGCCAACTTCGCCCa                         >  6:127214/1‑147 (MQ=255)
                                                                                                                      gACCTTCACCACCACCcacatggtggtggtgaaggtcgtaactttggtaagcacccggtaactccgtggggcgttcagaccaaaggtaagaagacccgca                                                               >  7:124463‑M1/1‑16 (MQ=255)
                                                                                                                      gACCTTCACCACCACCcacatggtggtggtgaaggtcgtaactttggtaagcacccggtaactccgtggggcgttcagaccaaaggtaagaagacccgca                                                               <  8:124463‑M1/100‑85 (MQ=255)
                                                                                                                         cTTCACCACCACCATGTGggtggtgaaggtcgtaactttggtaagcacccggtaactccgtggggcgttcagaccaaaggtaagaagacccgcagcaacaagcgtactgataaattcatcgtacgtcgccgtagcaaataattttagag           <  8:166170‑M2/149‑132 (MQ=255)
                                                                                                                          ttCACCACCACCATGTGggtggtggtgaaggtcgtaactttggtaagcacccggtaactccgtggggcgttcagaccaaaggt                                                                            <  5:116393‑M2/83‑67 (MQ=255)
                                                                                                                          ttCACCACCACCATGTGggtggtggtgaaggtcgtaactttggtaagcacccggtaactccgtggggcgttcagaccaaaggt                                                                            >  6:116393‑M2/1‑17 (MQ=255)
                                                                                                                            caccaccacCATGTGGGTGGTCTACCGGGTTCATCGCGGTACCGCGAACGGTCGGACGAACACCACGCCAGCGTGCAGCACCTGCTTTACCCAGAACGCGCAGCATATGCTCAGCATTGCCAACTTCGCCCAGAGTTGCACGGCAGt          <  5:127214/147‑1 (MQ=255)
                                                                                                                              ccaccaccaTGTGggtggtggtgaaggtcgtaactttggtaagcacccggtaactccgtggggc                                                                                           >  7:102720‑M2/1‑13 (MQ=255)
                                                                                                                              ccaccaccaTGTGggtggtggtgaaggtcgtaactttggtaagcacccggtaactccgtggggc                                                                                           <  8:102720‑M2/64‑52 (MQ=255)
                                                                                                                              ccaccaccaTGTGGGTGGTCTACCGGGTTCATCGCGGTACCGCGAACGGTCGGACGAACACCACGCCAGCGTGCAGCACCTGCTTTACCCAGAACGCGCAGCATATGCTCAGCATTGCCAACTTCGCCCAGAGTTGCACGGCAGTCTGc      >  3:19199/1‑149 (MQ=255)
                                                                                                                               caccaccaTGTGGGTGGTCTACCGGGTTCATCGCGGTACCGCGAACGGTCGGACGAACACCACGCCAGCGTGCAGCACCTGCTTTACCCAGAACGCGCAGCATATGCTCAGCATTGCCAACTTCGCCCAGAGTTGCACGGCAGTCTGCt     <  6:805/149‑1 (MQ=255)
                                                                                                                                accaccaTGTGGGTGGTCTACCGGGTTCATCGCGGTACCGCGAACGGTCGGACGAACACCACGCCAGCGTGCAGCACCTGCTTTACCCAGAACGCGCAGCATATGCTCAGCATTGCCAACTTCGCCCAGAGTTGCACGGCAGTCTGCtt    >  6:701/1‑149 (MQ=255)
                                                                                                                                  cacccacatggtggtggtgaaggtcgtaactttggtaagcacccggtaactccgtggggcgttcagac                                                                                   >  4:155367‑M1/1‑4 (MQ=255)
                                                                                                                                  cacccacatggtggtggtgaaggtcgtaactttggtaagcacccggtaactccgtggggcgttcagac                                                                                   <  3:155367‑M1/68‑65 (MQ=255)
                                                                                                                                  caccaTGTGGGTGGTCTACCGGGTTCATCGCGGTACCGCGAACGGTCGGACGAACACCACGCCAGCGTGCAGCACCTGCTTTACCCAGAACGCGCAGCATATGCTCAGCATTGCCAACTTCGCCCAGAGTTGCACGGCAGTCTGCTTCt  <  4:164288/149‑1 (MQ=255)
                                                                                                                                     ccacatggtggtggtgaaggtcgtaactttggtaagcacccggtaactccgtggggcgttcagaccaaaggtaagaa                                                                       <  7:45882‑M1/77‑77 (MQ=255)
                                                                                                                                     ccacatggtggtggtgaaggtcgtaactttggtaagcacccggtaactccgtggggcgttcagaccaaaggtaagaa                                                                       >  8:45882‑M1/1‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                                 
CTCTAAAATTATTTGCTACGGCGACGTACGATGAATTTATCAGTACGCTTGTTGCTGCGGGTCTTCTTACCTTTGGTCTGAACGCCCCACGGAGTTACCGGGTGCTTACCAAAGTTACGACCTTCACCACCACCATGTGGGTGGTCTACCGGGTTCATCGCGGTACCGCGAACGGTCGGACGAACACCACGCCAGCGTGCAGCACCTGCTTTACCCAGAACGCGCAGCATATGCTCAGCATTGCCAACTTCGCCCAGAGTTGCACGGCAGTCTGCTTCT  >  NC_000913/3450535‑3450813

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.