mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 35.8% | 174.4 / 146.1 | 163 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 1,708,805 | 0 | T | C | 22.3% | 254.2 / 28.8 | 141 | R629R (CGT→CGC) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Marginal new junction evidence (lowest skew 10 of 162 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3548549 | 101 (0.790) | 15 (0.140) +23 bp |
13/252 | 12.2 | 14.8% | coding (1522/2085 nt) | malQ | 4‑alpha‑glucanotransferase (amylomaltase) |
| ? | NC_000913 | 3548573 = | 103 (0.810) | coding (1498/2085 nt) | malQ | 4‑alpha‑glucanotransferase (amylomaltase) | |||||
| * | ? | NC_000913 | = 2270096 | 148 (1.160) | 7 (0.060) | 6/278 | 17.8 | 5.2% | coding (118/567 nt) | mepS | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase |
| ? | NC_000913 | = 2270134 | 115 (0.960) | coding (156/567 nt) | mepS | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase | |||||
| * | ? | NC_000913 | 4633091 = | NA (NA) | 6 (0.050) | 6/282 | 18.0 | 4.1% | noncoding (1/140 nt) | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | 4633169 = | 145 (1.170) | noncoding (79/140 nt) | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913 | = 1636407 | 133 (1.040) | 5 (0.040) | 5/266 | 18.0 | 3.8% | intergenic (‑40/‑349) | nohQ/ynfO | pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin/uncharacterized protein, Qin prophage |
| ? | NC_000913 | = 1636432 | 135 (1.180) | intergenic (‑65/‑324) | nohQ/ynfO | pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin/uncharacterized protein, Qin prophage | |||||
| * | ? | NC_000913 | 2304471 = | 138 (1.080) | 9 (0.070) | 6/284 | 18.1 | 6.4% | noncoding (55/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | 2304616 = | NA (NA) | noncoding (200/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913 | 2066607 = | 50 (0.390) | 7 (0.060) | 6/284 | 18.1 | 12.8% | noncoding (747/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 2102148 = | NA (NA) | noncoding (796/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 2066551 = | 48 (0.380) | 7 (0.060) | 6/284 | 18.1 | 13.3% | noncoding (803/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 2102204 = | NA (NA) | noncoding (740/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 2066551 = | 48 (0.380) | 7 (0.060) | 6/284 | 18.1 | 13.4% | noncoding (803/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 2066614 = | 45 (0.370) | noncoding (740/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 780631 | 114 (0.890) | 4 (0.040) +24 bp |
4/250 | 18.1 | 3.8% | intergenic (+2/‑134) | lysT/valT | tRNA‑Lys/tRNA‑Val |
| ? | NC_000913 | = 781535 | 131 (1.020) | intergenic (+91/‑42) | lysZ/lysQ | tRNA‑Lys/tRNA‑Lys | |||||
| * | ? | NC_000913 | 274347 = | NA (NA) | 7 (0.060) | 6/284 | 18.1 | NA | noncoding (803/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274410 = | NA (NA) | noncoding (740/1195 nt) | IS5 | repeat region | |||||