New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1124056 =	28 (0.780)	4 (0.120)	4/246	4.3	11.9%	intergenic (‑2/+62)	grxB/mdtH	glutaredoxin 2 (Grx2)/multidrug resistance efflux transporter conferring overexpression resistance to norfloxacin and enoxacin
	?	NC_000913	1124103 =	33 (0.980)					intergenic (‑49/+15)	grxB/mdtH	glutaredoxin 2 (Grx2)/multidrug resistance efflux transporter conferring overexpression resistance to norfloxacin and enoxacin
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGACCGACCATCCGGGTGGGTGTTTCTGCGTCGTCGTTGAGCAGAACATGTAATTCGACGGGGATATTTTTCAGGCCGAAAATCATGCGGGCTTTGAGGCAGTAAGGGCAGTGATCGTAAATGTATAGCTTCACGTGACTCCTCCATTTGGCTGTCAGTTCACTTTCAGTATGAAGGAGTCAGGGGGGAGTATCAAATCAGGCGTCGCGTTCAAGCAAACGACGCGCGGCGCGTTTCTGGCTAAACTGCCAACCCAGCGCAAGGAAAGTGAAGATGCCAA  >  NC_000913/1123921‑1124200                                                                                                                                        |                                                                                                                                                 tGACCGACCATCCGGGTGGGTGTTTCTGCGTCGTCGTTGAGCAGAACATGTAATTCGACGGGGATATTTTTCAGGCCGAAAATCATGCGGGCTTTGAGGCAGTAAGGGCAGTGATCGTAAATGTATAGCTTCACGTGACTCCTCCAtt                                                                                                                                      <  3:70580/148‑1 (MQ=255)  gaccgaccATCCGGGTGGGTGTTTCTGCGTCGTCGTTGAGCAGAACATGTAATTCGACGGGGATATTTTTCAGGCCGAAAATCATGCGGGCTTTGAGGCAGTAAGGGCAGTGATCGTAAATGTATAGCTTCACGTGACTCCTCCATTTg                                                                                                                                    >  3:93118/1‑149 (MQ=255)   accgaccATCCGGGTGGGTGTTTCTGCGTCGTCGTTGAGCAGAACATGTAATTCGACGGGGATATTTTTCAGGCCGAAAATCATGCGGGCTTTGAGGCAGTAAGGGCAGTGATCGTAAATGTATAGCTTCACGTGACTCCTCCATTTgg                                                                                                                                   >  5:98949/1‑149 (MQ=255)          aTCCGGGTGGGTGTTTCTGCGTCGTCGTTGAGCAGAACATGTAATTCGACGGGGATATTTTTCAGGCCGAAAATCATGCGGGCTTTGAGGCAGTAAGGGCAGTGATCGTAAATGTATAGCTTCACGTGACTCCTCCATTTGGCTGTCAg                                                                                                                            >  5:2512/1‑149 (MQ=255)               ggtgggtgTTTCTGCGTCGTCGTTGAGCAGAACATGTAATTCGACGGGGATATTTTTCAGGCCGAAAATCATGCGGGCTTTGAGGCAGTAAGGGCAGTGATCGTAAATGTATAGCTTCACGTGACTCCTCCATTTGGCTGTCAGTTCAc                                                                                                                       <  7:121753/149‑1 (MQ=255)                   ggtgTTTCTGCGTCGTCGTTGAGCAGAACATGTAATTCGACGGGGATATTTTTCAGGCCGAAAATCATGCGGGCTTTGAGGCAGTAAGGGCAGTGATCGTAAATGTATAGCTTCACGTGACTCCTCCATTTGGCTGTCAGTTCACttt                                                                                                                    <  3:112435/148‑1 (MQ=255)                   ggtgTTTCTGCGTCGTCGTTGAGCAGAACATGTAATTCGACGGGGATATTTTTCAGGCCGAAAATCATGCGGGCTTTGAGGCAGTAAGGGCAGTGATCGTAAATGTATAGCTTCACGTGACTCCTCCATTTGGCTGTCAGTTCACTTTc                                                                                                                   <  3:130519/149‑1 (MQ=255)                    gtgtTTCTGCGTGGTCGTTGAGCAGAACATGTAATTCTACTGGGATATTTTTCAGGCCTAAAATCATGCGGGATGTGAGGCAGTAAGGGCAGTGATCTTAAATGTATAGCTTCACTTGAATCCTCCATTTGGCTTTCAGTTCAATTTcc                                                                                                                  >  8:107945/1‑148 (MQ=255)                    gtgtTTCTGCGTCGTCGTTGAGCAGAACATGTAATTCGACGGGGATATTTTTCAGGCCGAAAATCATGCGGGCTTTGAGGCAGTAAGGGCAGTGATCGTAAATGTATAGCTTCACGTGACTCCTCCATTTGGCTGTCAGTTCACTTTCa                                                                                                                  <  6:98949/149‑1 (MQ=255)                           tGCGTCGTCGTTGAGCAGAACATGTAATTCGACGGGGATATTTTTCAGGCCGAAAATCATGCGGGCTTTGAGGCAGTAAGGGCAGTGATCGTAAATGTATAGCTTCACGTGACTCCTCCATTTGGCTGTCAGTTCACTTTCAGTATg                                                                                                             >  6:57686/1‑147 (MQ=255)                              gtcgtcgtTGAGCAGAACATGTAATTCGACGGGGATATTTTTCAGGCCGAAAATCATGCGGGCTTTGAGGCAGTAAGGGCAGTGATCGTAAATGTATAGCTTCACGTGACTCCTCCATTTGGCTGTCAGTTCACTTTCAGTATGAAGGa                                                                                                        <  5:57686/149‑1 (MQ=255)                                 gtcgtTGAGCAGAACATGTAATTCGACGGGGATATTTTTCAGGCCGAAAATCATGCGGGCTTTGAGGCAGTAAGGGCAGTGATCGTAAATGTATAGCTTCACGTGACTCCTCCATTTGGCTGTCAGTTCACTTTCAGTATGAAGGAGTc                                                                                                     <  4:93118/149‑1 (MQ=255)                                    gtTGAGCAGAACATGTAATTCGACGGGGATATTTTTCAGGCCGAAAATCATGCGGGCTTTGAGGCAGTAAGGGCAGTGATCGTAAATGTATAGCTTCACGTGACTCCTCCATTTGGCTGTCAGTTCACTTTCAGTATGAAGGAGTCAgg                                                                                                  <  6:2512/149‑1 (MQ=255)                                     ttGAGCAGAACATGTAATTCGACGGGGATATTTTTCAGGCCGAAAATCATGCGGGCTTTGAGGCAGTAAGGGCAGTGATCGTAAATGTATAGCTTCACGTGACTCCTCCATTTGGCTGTCAGTTCACTTTCAGTATGAAGGAGTCAggg                                                                                                 <  2:9920/149‑1 (MQ=255)                                                   tAATTCGACGGGGATATTTTTCAGGCCGAAAATCATGCGGGCTTTGAGGCAGTAAGGGCAGTGATCGTAAATGTATAGCTTCACGTGACTCCTCCATTTGGCt                                                                                                                                 <  4:9358/103‑1 (MQ=255)                                                   tAATTCGACGGGGATATTTTTCAGGCCGAAAATCATGCGGGCTTTGAGGCAGTAAGGGCAGTGATCGTAAATGTATAGCTTCACGTGACTCCTCCATTTGGCt                                                                                                                                 >  3:9358/1‑103 (MQ=255)                                                              ggATATTTTTCAGGCCGAAAATCATGCGGGCTTTGAGGCAGTAAGGGCAGTGATCGTAAATGTATAGCTTCACGTGACTCCTCCATTTGGCTGTCAGTTCACTTTCAGTATGAAGGAGTCAGGGGGGAGTATCAAATCAGGCGTCGCGt                                                                        >  2:104661/1‑149 (MQ=255)                                                               gATATTTTTCAGGCCGAAAATCATGCGGGCTTTGAGGCAGTAAGGGCAGTGATCGTAAATGTATAGCTTCACGTGACTCCTCCATTTGGCTGTCAGTTCACTTTCAGTATGAAGGAGTCAGGGGGGAGTATCAAATCAGGCGTCGCGtt                                                                       >  5:118822/1‑149 (MQ=255)                                                                atatTTTTCAGGCCGAAAATCATGCGGGCTTTGAGGCAGTAAGGGCAGTGATCGTAAATGTATAGCTTCACGTGACTCCTCCATTTGGCTGTCAGTTCACTTTCAGTATGAAGGAGTCAGGGGGGAGTATCAAATCAGGCGTCGCGTTc                                                                      <  1:104661/149‑1 (MQ=255)                                                                                                          gggCAGTGATCGTAAATGTATAGCTTCACGTGACTCCTCCATTTGGCTGTCAGTTCACTTTCAGTATGAAGGAGTCAGGGGGGAGTATCAAATCAGGCGTCGCGTTCAAGCAAACGACGCGCGGCGCGTTTCTGGCTAAACTGCCAAcc                            >  6:11171/1‑149 (MQ=255)                                                                                                            gCAGTGATCGTAAATGTATAGCTTCACGTGACTCCTCCATTTGGCTGTCAGTTCACTTTCAGTATGAAGGAGTCAGGGGGGAGTATCAAATCAGGCGTCGCGTTCAAGCAAACGACGCGCGGCGCGTTTCTGGCTAAACTGCCaa                              <  5:53004/145‑1 (MQ=255)                                                                                                            gCAGTGATCGTAAATGTATAGCTTCACGTGACTCCTCCATTTGGCTGTCAGTTCACTTTCAGTATGAAGGAGTCAGGGGGGAGTATCAAATCAGGCGTCGCGTTCAAGCAAACGACGCGCGGCGCGTTTCTGGCTAAACTGCCaa                              >  6:53004/1‑145 (MQ=255)                                                                                                                              taGCTTCACGTGACTCCTCCATTTGGCTGTCAGTTCACTTTCAGTATGAAGGAGTCAGGGGGGAGTATCAAATCAGGCGTCGCGTTCAAGCAAACGACGCGCGGCGCGTTTCTGGCTaaa                                     <  7:134759/120‑1 (MQ=255)                                                                                                                              taGCTTCACGTGACTCCTCCATTTGGCTGTCAGTTCACTTTCAGTATGAAGGAGTCAGGGGGGAGTATCAAATCAGGCGTCGCGTTCAAGCAAACGACGCGCGGCGCGTTTCTGGCTaaa                                     >  8:134759/1‑120 (MQ=255)                                                                                                                                gCTTCACGTGACTCCTCCATTTGGCTGTCAGTTCACTTTCAGTATGAAGGAGTCAGGGGGGAGTATCAAATCAGGCGTCGCGTTCAAGCAAACGACGCGCGGCGCGTTTCTGGCTAAACTGCCAACCCAGCGCAAGGAAAGTGAAGATg      >  3:35629/1‑149 (MQ=255)                                                                                                                                     aCGTGACTCCTCCATTTGGCTGTCAGTTCACTTTCAGTATGAAGGAGTCAGGGGGGAGTATCAAATCAGGCGTCGCGTTCAAGCAAACGACGCGCGGCGCGTTTCTGGCTAAACTGCCAACCCAGCGCAAGGAAAGTGAAGATGCCaa  <  6:118822/148‑1 (MQ=255)                                                                                                                                       gTGACTCCTCCATTTGGCTGTCAGTTCACTTTCAGTATGAAGGAGTCAGGGGGGAGTATCAAATCAGGCGTCGCGTTCAAGCAAACGACGCGCGGCGCGTTTCTGGCTAAACTGCCAACCCAGCGCAAGGAAAGTGAAGAt       <  6:119439/141‑1 (MQ=255)                                                                                                                                       gTGACTCCTCCATTTGGCTGTCAGTTCACTTTCAGTATGAAGGAGTCAGGGGGGAGTATCAAATCAGGCGTCGCGTTCAAGCAAACGACGCGCGGCGCGTTTCTGGCTAAACTGCCAACCCAGCGCAAGGAAAGTGAAGAt       >  5:119439/1‑141 (MQ=255)                                                                                                                                        |                                                                                                                                                 TGACCGACCATCCGGGTGGGTGTTTCTGCGTCGTCGTTGAGCAGAACATGTAATTCGACGGGGATATTTTTCAGGCCGAAAATCATGCGGGCTTTGAGGCAGTAAGGGCAGTGATCGTAAATGTATAGCTTCACGTGACTCCTCCATTTGGCTGTCAGTTCACTTTCAGTATGAAGGAGTCAGGGGGGAGTATCAAATCAGGCGTCGCGTTCAAGCAAACGACGCGCGGCGCGTTTCTGGCTAAACTGCCAACCCAGCGCAAGGAAAGTGAAGATGCCAA  >  NC_000913/1123921‑1124200

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.