Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 564,107 IS2 (+) +5 bp coding (370‑374/633 nt) sfmZ ← response regulator family protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 381260 =NA (NA)25 (0.700) 24/260 0.7 100% noncoding (1/1331 nt) IS2 repeat region
?NC_000913 = 564111 0 (0.000)coding (370/633 nt) sfmZ response regulator family protein
* ? NC_000913 = 382590NA (NA)33 (0.920) 29/262 0.4 100% noncoding (1331/1331 nt) IS2 repeat region
?NC_000913 564107 = 0 (0.000)coding (374/633 nt) sfmZ response regulator family protein

TAACTTATCGGCAATTTCTTTATTAGATAATCCGCTAACCAGATAACGTAATATGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACTTTCACTGTG  >  NC_000913/563959‑564253
                                                                                                                                                    |                                                                                                                                                  
caaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccag                                                                                                                                                    <  1:70537‑M2/1‑1 (MQ=255)
   cTTATCGGCAATTTCTTTATTAGATAATCCGCTAACCAGATAACGTAATATGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACgtg                                                                                                                                                  >  3:36279/1‑148 (MQ=255)
   cTTATCGGCAATTTCTTTATTAGATAATCCGCTAACCAGATAACGTAATATGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACgtg                                                                                                                                                  <  4:36279/148‑1 (MQ=255)
   cTTATCGGCAATTTCTTTATTAGATAATCCGCTAACCAGATAACGTAATATGGTCACGTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACgtg                                                                                                                                                  >  7:107921/1‑148 (MQ=255)
    ttATCGGCAATTTCTTTATTAGATAATCCGCTAACCAGATAACGTAATATGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTa                                                                                                                                                >  6:120384/1‑149 (MQ=255)
           cAATTTCTTTATTAGATAATCCGCTAACCAGATAACGTAATATGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactg                                                                                                                                         >  5:120384‑M2/1‑142 (MQ=255)
             aTTTCTTTATTAGATAATCCGCTAACCAGATAACGTAATATGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggc                                                                                                                                       >  8:107921‑M2/1‑140 (MQ=255)
              gaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAgg                                                                                                                                      <  6:56614‑M2/15‑1 (MQ=255)
                      ttaGATAATCCGCTAACCAGATAACGTAATATGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaa                                                                                                                               <  8:130614‑M2/148‑18 (MQ=255)
                             aTCCGCTAACCAGATAACGTAATATGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccaga                                                                                                                       >  1:122587‑M2/1‑124 (MQ=255)
                                 gCTAACCAGATAACGTAATATGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaac                                                                                                                   <  2:175004‑M2/149‑30 (MQ=255)
                                  cgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGaaa                                                                                                                  <  1:181843‑M2/35‑1 (MQ=255)
                                    aatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGaaaaa                                                                                                                >  1:145170‑M2/113‑149 (MQ=255)
                                              gcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCt                                                                                                       >  1:33618‑M2/103‑148 (MQ=255)
                                                     tGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcac                                                                                                          <  7:48685‑M2/138‑39 (MQ=255)
                                                     tGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcac                                                                                                          >  8:48685‑M2/1‑100 (MQ=255)
                                                        tCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataag                                                                                                 <  6:140060‑M2/144‑48 (MQ=255)
                                                        tCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataag                                                                                                 >  5:140060‑M2/1‑97 (MQ=255)
                                                        ctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCAt                                                                                            <  3:132899‑M2/57‑1 (MQ=255)
                                                                cGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaat                                                                                    >  7:130614‑M2/1‑89 (MQ=255)
                                                                cGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaa                                                                                     <  5:45951‑M2/148‑60 (MQ=255)
                                                                  gctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaattataggggcaattccaGTGTTTCCGGTGAGGATCATCTGAAGGGCATCAAAATTATCATTCTGATCATTGCATTTACTGACa                                                                                   >  7:6918‑M2/83‑148 (MQ=255)
                                                                   ttAGATAGCACAGTGAACGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGGTAAGCGTTTCGCTGGGAAAAAAAGTGTAtagaatggccccctgaatctccagacaaccaatatcacttaaataatt                                                                                                >  5:55894‑M2/1‑86 (MQ=255)
                                                                         acgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGtt                                                                           <  3:115211‑M2/74‑1 (MQ=255)
                                                                         aGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttt                                                                           <  5:110885‑M2/149‑70 (MQ=255)
                                                                          cgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTa                                                                          <  2:33618‑M2/75‑1 (MQ=255)
                                                                             gaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCa                                                                       >  5:40636‑M2/72‑149 (MQ=255)
                                                                               atatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTAc                                                                                        <  3:74036‑M2/61‑1 (MQ=255)
                                                                               atatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTAc                                                                                        >  4:74036‑M2/70‑130 (MQ=255)
                                                                                   ctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCAt                                                                                                                      >  2:153433‑M2/66‑96 (MQ=255)
                                                                                   ctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCAt                                                                                                                      <  1:153433‑M2/31‑1 (MQ=255)
                                                                                   ctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCt                                                                 >  7:75935‑M2/66‑149 (MQ=255)
                                                                                              ttCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaaca                                                      >  1:175004‑M2/1‑59 (MQ=255)
                                                                                              ggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAata                                                                                                              <  6:90892‑M2/39‑1 (MQ=255)
                                                                                                    taatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAg                                                 >  6:11290‑M2/49‑148 (MQ=255)
                                                                                                    taatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCAGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTAAGCACCAGCTTGAATCGCTCTGCCAg                                                 >  2:86665‑M2/49‑148 (MQ=255)
                                                                                                     tacATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgatt                                               <  1:125635‑M2/149‑98 (MQ=255)
                                                                                                       cATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggag                                                          <  5:15117‑M2/136‑87 (MQ=255)
                                                                                                       cATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggag                                                          >  6:15117‑M2/1‑50 (MQ=255)
                                                                                                            taagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGATAATTATCATTGTGATCATTGCATTTACTGACTAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAg                                         >  7:89027‑M2/41‑148 (MQ=255)
                                                                                                              tGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtct                                        <  8:85625‑M2/147‑105 (MQ=255)
                                                                                                               gtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCAtt                                     >  2:3649‑M2/38‑149 (MQ=255)
                                                                                                                cTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagg                                    >  6:45951‑M2/1‑41 (MQ=255)
                                                                                                                    aacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGAt                                >  1:106722‑M2/33‑149 (MQ=255)
                                                                                                                      cagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCa                                                  >  5:20707‑M2/31‑129 (MQ=255)
                                                                                                                      cagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCa                                                  <  6:20707‑M2/99‑1 (MQ=255)
                                                                                                                      cagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGAttt                              >  2:181360‑M2/31‑149 (MQ=255)
                                                                                                                      atataGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccgg                               >  7:85625‑M2/1‑35 (MQ=255)
                                                                                                                       agatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGATTTc                             <  1:3649‑M2/120‑1 (MQ=255)
                                                                                                                        gatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGATTTc                             >  3:102260‑M2/29‑148 (MQ=255)
                                                                                                                          tgtctggaaatatagggtcaaatccaGTGTATCCTGATAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCATCTTGTATCGCTCTTCCAGCATAAAAGCATTCTGATTTCgat                          <  8:89027‑M2/123‑1 (MQ=255)
                                                                                                                              tggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGATTTCgatgat                       >  2:95801‑M2/23‑148 (MQ=255)
                                                                                                                                   atataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAAt                 <  6:40636‑M2/132‑1 (MQ=255)
                                                                                                                                      taggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATaa               <  2:145170‑M2/134‑1 (MQ=255)
                                                                                                                                        cTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggag                             >  4:113836‑M2/1‑17 (MQ=255)
                                                                                                                                        cTGGGAAAAAACGTGTAtagactggcaccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggag                             <  3:113836‑M2/132‑116 (MQ=255)
                                                                                                                                           gcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACttt         <  1:95801‑M2/140‑1 (MQ=255)
                                                                                                                                               aaaaCGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacag     >  2:125635‑M2/1‑10 (MQ=255)
                                                                                                                                                tccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCTGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACTTTCACtg    >  7:140435‑M2/5‑149 (MQ=255)
                                                                                                                                                aaaCGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacag     <  2:310‑M2/148‑140 (MQ=255)
                                                                                                                                                  gaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATTTCATTCTGATCATTGCATTTACTGACAAATCCGTTAGCACCAGATTGTATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGTTGATAAATATAACACTTTCACtgtg  <  7:90503‑M2/147‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                  
TAACTTATCGGCAATTTCTTTATTAGATAATCCGCTAACCAGATAACGTAATATGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACTTTCACTGTG  >  NC_000913/563959‑564253

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.