New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3888411174 (1.940)4 (0.050) 4/236 NT 2.4% intergenic (+219/‑24) mnmE/tnaC tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide
?NC_000913 = 3888418 157 (1.830)intergenic (+226/‑17) mnmE/tnaC tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide
Rejected: Frequency below/above cutoff threshold.

Only 100 of 239 total aligned reads displayed.

CAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGACAACAAAATTGTCGATCACCGCCCTTGATTTGCCCTTCTGTAGCCATCACCAGAGCCAAACCGATTAGATTCAATGT  >  NC_000913/3888264‑3888558
                                                                                                                                                   |                                                                                                                                                   
cAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCG                                                                                                                                                     >  8:289283‑M1/1‑148 (MQ=255)
    ccTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTc                                                                                                                                                 >  6:186247/1‑148 (MQ=255)
    ccTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTc                                                                                                                                                 <  2:184246/148‑1 (MQ=255)
     cTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCG                                                                                                                                                     <  5:154567‑M1/143‑1 (MQ=255)
       ttttttAAACATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTg                                                                                                                                              >  2:395018/1‑148 (MQ=255)
       ttttttAAACATTAAAATTATTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAAGTCTGAGTGTAATAATGTAGCCTCGTGTCTTg                                                                                                                                              >  8:415080/1‑148 (MQ=255)
        tttttAAACATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTTCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGc                                                                                                                                             <  2:301280‑M2/148‑2 (MQ=255)
        tttttAAACATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTg                                                                                                                                              <  7:175693/147‑1 (MQ=255)
        tttttAAACATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGc                                                                                                                                             <  3:413971‑M2/148‑2 (MQ=255)
          tttAAACATTAAAATTCTTACTTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGcg                                                                                                                                            >  3:302929‑M2/1‑145 (MQ=255)
          tttAAACATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGcg                                                                                                                                            >  8:401873‑M2/1‑145 (MQ=255)
             aaaCATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGcgagg                                                                                                                                         >  4:413971‑M2/1‑142 (MQ=255)
              aaCATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGa                                                                                                                                        >  5:191685/1‑147 (MQ=255)
               aCATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCTAGGAt                                                                                                                                       >  5:12553/1‑147 (MQ=255)
               aCATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGAt                                                                                                                                       >  7:133899/1‑147 (MQ=255)
               aCATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATa                                                                                                                                      <  3:371596/148‑1 (MQ=255)
                cATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGAt                                                                                                                                       >  8:162342/1‑146 (MQ=255)
                cATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGAt                                                                                                                                       >  8:432125/1‑146 (MQ=255)
                cATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATaa                                                                                                                                     <  2:246249/148‑1 (MQ=255)
                  tttataTTCTTACGTAATTTATAATCTTTTAAAAAAGCTTTTTATTTTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAg                                                                                                                                    <  6:140378/142‑1 (MQ=255)
                  ttAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGt                                                                                                                                   >  6:253461/1‑148 (MQ=255)
                     aaaTTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGc                                                                                                                                 <  7:390876/147‑1 (MQ=255)
                           ttACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGa                                                                                                                          <  2:337332/148‑1 (MQ=255)
                             aCGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGaa                                                                                                                         <  4:305337/147‑1 (MQ=255)
                                  aTTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCt                                                                                                                    >  2:386442/1‑147 (MQ=255)
                                  aTTTATAATCTTTAAAAAAAGCATTAAATATTGCTCCCCGAACCATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCtt                                                                                                                   <  2:120951/148‑1 (MQ=255)
                                   tttATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTa                                                                                                                  <  4:233650/148‑1 (MQ=255)
                                    ttATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACTATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTa                                                                                                                  >  5:336108/1‑147 (MQ=255)
                                    ttATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGcaagacacgaggctacattattacactcagagtttt                                                                                                                 >  4:348029‑M1/1‑112 (MQ=255)
                                     tataATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATa                                                                                                                                      <  4:184768/126‑1 (MQ=255)
                                       taATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACata                                                                                                              >  7:270396/1‑148 (MQ=255)
                                         aTCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAATCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACatata                                                                                                            >  8:263156/1‑148 (MQ=255)
                                         aTCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACatat                                                                                                             <  8:341395/147‑1 (MQ=255)
                                           cTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATAtg                                                                                                          >  1:441349/1‑148 (MQ=255)
                                             ttAAAAAAAGCATTTAATATTGCTCCCAGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCGTGCGAGGATAAGTGCATTATGAATATCTTACATATAtgtg                                                                                                        >  2:187768/1‑148 (MQ=255)
                                              tAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGcaagacacgaggctacattattacactcagagtttttgtctattc                                                                                                        <  3:348029‑M1/147‑46 (MQ=255)
                                              tAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATAtgt                                                                                                         <  4:393843/146‑1 (MQ=255)
                                              tAAAAAAAGAATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAAAAATGTAGCCTCTTGTCTTTCGAGGATAAGTGCATTATGAATATCTTACATATAtgtgt                                                                                                       >  4:123400/1‑148 (MQ=255)
                                               aaaaaaaGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCgtgt                                                                                                                                                  <  4:204231/104‑1 (MQ=255)
                                                aaaaaaGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATAtgtgtg                                                                                                      <  3:194372/147‑1 (MQ=255)
                                                aaaaaaGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATAtgtgtg                                                                                                      <  4:273574/147‑1 (MQ=255)
                                                aaaaaaGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGa                                                                                                     <  7:308381/148‑1 (MQ=255)
                                                     aGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGGCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGGGACCTCa                                                                                                <  7:263156/148‑1 (MQ=255)
                                                        aTTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCaaa                                                                                              <  1:381296/147‑1 (MQ=255)
                                                         tttAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAAt                                                                                            <  3:398499/148‑1 (MQ=255)
                                                          ttAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATAtgt                                                                                                         <  3:43318/134‑1 (MQ=255)
                                                             atatTGCTCCCCGAACGATTTTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGt                                                                                         <  7:8778/147‑1 (MQ=255)
                                                             atatTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGtt                                                                                        <  5:253461/148‑1 (MQ=255)
                                                               atTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAAt                                                                                            >  1:24089/1‑142 (MQ=255)
                                                                ttGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGAGAAAAACTATGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCa                                                                                      <  3:213934/147‑1 (MQ=255)
                                                                ttGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCa                                                                                      <  1:26423/147‑1 (MQ=255)
                                                                    tcaccGAACGATTGTGATTCGATTCACATATAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATAtt                                                                                 >  5:406316/4‑148 (MQ=255)
                                                                      cccGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAATACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGa                                                                               <  4:42162/148‑1 (MQ=255)
                                                                      cccGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGa                                                                               <  4:47760/148‑1 (MQ=255)
                                                                       ccGAACGATTGTGATTCTATTCACATTTAAACAATTTCAGAATAGACGAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCAtt                                                                                                                              <  1:104499/100‑1 (MQ=255)
                                                                       ccGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGac                                                                              <  2:257336/148‑1 (MQ=255)
                                                                       ccGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGa                                                                               >  2:147888/1‑147 (MQ=255)
                                                                       ccGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGa                                                                               >  6:26280/1‑147 (MQ=255)
                                                                         gAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGacaa                                                                            >  1:256173/1‑148 (MQ=255)
                                                                              aTTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGACAACaaaa                                                                       <  8:270396/148‑1 (MQ=255)
                                                                              aTTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGACAACaaaa                                                                       <  3:293067/148‑1 (MQ=255)
                                                                              aTTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACATCAAAATGGTTCAATATTGACAACaaaa                                                                       >  1:212007/1‑148 (MQ=255)
                                                                               ttGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGACAACAAAAt                                                                      <  6:406316/148‑1 (MQ=255)
                                                                                  tgATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGACAACAAAATTGt                                                                   <  2:27483/148‑1 (MQ=255)
                                                                                   gattcgattcACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGACAACAAAATTGTc                                                                  >  1:98863/1‑148 (MQ=255)
                                                                                    attcgattcACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGcgaggctacattattacactcagagtttttgtctattctgaaattgtttaaatgtgaatcgaatcacaatcgttcgg                                                                 <  2:294141‑M2/148‑78 (MQ=255)
                                                                                    attcgattcACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGACAACAAAATTg                                                                    >  1:12084/1‑145 (MQ=255)
                                                                                      tcgattcACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCtt                                                                                                                   <  8:440895/96‑1 (MQ=255)
                                                                                      tcgattcACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCtt                                                                                                                   >  7:440895/1‑96 (MQ=255)
                                                                                                  tAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGACAACAAAATTGTCGATCACCGCCCTTg                                                    <  1:383624/147‑1 (MQ=255)
                                                                                                  tAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGACAACAAAATTGTCGATCACCGCCCTTg                                                    <  6:221796/147‑1 (MQ=255)
                                                                                                    aaCAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTACGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGACAACAAAATTGTCGATCACCGCCCTTGAtt                                                 <  8:377515/148‑1 (MQ=255)
                                                                                                    aaCAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGACTCGTGTCTTGCGAGTATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGACAACAAAATTGTCGATCACCGCCCTTGAtt                                                 <  5:110775/148‑1 (MQ=255)
                                                                                                             aGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGACAACAAAATTGTCGATCACCGCCCTTGATTTGCCCTTc                                         <  7:289283/147‑1 (MQ=255)
                                                                                                               aaTAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGACAACAAAATTGTCGATCACCGCCCTTGATTTGCCCTTCTg                                       >  7:222300/1‑147 (MQ=255)
                                                                                                                aTAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGACAACAAAATTGTCGATCACCGCCCTTGATTTGCCCTTCTg                                       >  7:62560/1‑146 (MQ=255)
                                                                                                                 tAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGACAACAAAATTGTCGATCACCGCCCTTGATTTGCCCTTCTGTAg                                    <  8:222300/148‑1 (MQ=255)
                                                                                                                     cAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGACAACAAAATTGTCGATCACCGCCCTTGATTTGCCCTTCTGTAGCCAt                                <  7:342241/148‑1 (MQ=255)
                                                                                                                         aaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGACAACAAAATTGTCGATCACCGCCCTTGATTTGCCCTTCTGTAGCCATCAc                             >  1:166691/1‑147 (MQ=255)
                                                                                                                           ctctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGACAACAAAATTGTCGATCACCGCCCTTGATTTGCCCTTCTGTAGCCATCACCag                          <  7:413675/148‑1 (MQ=255)
                                                                                                                           ctctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGACAACAAAATTGTCGATCACCGCCCTTGATTTGCCCTTCTGTAGCCATCACCag                          <  2:85592/148‑1 (MQ=255)
                                                                                                                                  tgtAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGACAACAAAATTGTCGATCACCGCCCTTGATTTGCCCTTCTGTAGCCATCACCAGAGCCaaa                   >  5:21171/1‑148 (MQ=255)
                                                                                                                                      ataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGACAACAAAATTGTCGATCACCGCCCTTGATTTGCCCTTCTGTAGCCATCACCAGAGCCAAACCGa               >  3:149819/1‑148 (MQ=255)
                                                                                                                                      ataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGACAACAAAATTGTCGATCACCGCCCTTGATTTGCCCTTCTGTAGCCATCACCAGAGCCAAACCGa               >  1:200172/1‑148 (MQ=255)
                                                                                                                                       taatGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGACAACAAAATTGTCGATCACCGCCCTTGATTTGCCCTTCTGTAGCCATCACCAGAGCCAAACCGAt              <  3:262126/148‑1 (MQ=255)
                                                                                                                                         atGTAGCCTCGTGTCTTGcgaggctacattattacactcagagtttttgtctattctgaaattgtttaaatgtgaatcgaatcacaatcgttcggggagcaatattaaatgctttttttaaagattataaattacgtaagaatttta             >  1:294141‑M2/1‑18 (MQ=255)
                                                                                                                                         atGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGACAACAAAATTGTCGATCACCGCCCTTGATTTGCCCTTCTGTAGCCATCACCAGAGCCAAACCGAt              >  2:174500/1‑146 (MQ=255)
                                                                                                                                               ccTCGcaagacacgaggctacattattacactcagagtttttgtctattctgaaattgtttaaatgtgaatcgaatcacaatcgttcggggagcaatattaaatgctttttttaaagattataaattacgtaagaattttaatgttt       >  4:3536‑M1/1‑5 (MQ=255)
                                                                                                                                               ccTCGcaagacacgaggctacattattacactcagagtttttgtctattctgaaattgtttaaatgtgaatcgaatcacaatcgttcggggagcaatattaaatgctttttttaaagattataaattacgtaagaattttaatgttt       >  5:65241‑M1/1‑5 (MQ=255)
                                                                                                                                               ccTCGcaagacacgaggctacattattacactcagagtttttgtctattctgaaattgtttaaatgtgaatcgaatcacaatcgttcggggagcaatattaaatgctttttttaaagattataaattacgtaaga                   >  5:243922‑M1/1‑5 (MQ=255)
                                                                                                                                               ccTCGcaagacacgaggctacattattacactcagagtttttgtctattctgaaattgtttaaatgtgaatcgaatcacaatcgttcggggagcaatattaaatgctttttttaaagattataaattacgtaaga                   <  6:243922‑M1/135‑131 (MQ=255)
                                                                                                                                               ccTCGcaagacacgaggctacattattacactcagagtttttgtctattctgaaattgtttaaatgtgaatcgaatcacaatcgtt                                                                    <  7:337364‑M1/86‑82 (MQ=255)
                                                                                                                                               ccTCGcaagacacgaggctacattattacactcagagtttttgtctattctgaaattgtttaaatgtgaatcgaatcacaatcgtt                                                                    >  8:337364‑M1/1‑5 (MQ=255)
                                                                                                                                               ccTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGACAACAAAATTGTCGATCACCGCCCTTGATTTGCCCTTCTGTAGCCATCACCAGAGCCAAACCGATTAGATTCa      <  5:26280/148‑1 (MQ=255)
                                                                                                                                                 tCGcaagacacgaggctacattattacactcagagtttttgtctattctgaaattgtttaaatgtgaatcgaatcacaatcgttcgg                                                                 <  5:241643‑M1/87‑85 (MQ=255)
                                                                                                                                                 tCGcaagacacgaggctacattattacactcagagtttttgtctattctgaaattgtttaaatgtgaatcgaatcacaatcgttcgg                                                                 >  6:241643‑M1/1‑3 (MQ=255)
                                                                                                                                                  cGcaagacacgatgctacattattacactcagagtttttgtctattctgaaattgtttaaatgtgaatcgaatcacaatcgttcggggagcaatattaaatgctttttttaaagattataaattacgtaagaattttaatgtttaaa    >  4:264615‑M1/1‑2 (MQ=255)
                                                                                                                                                   gtgtCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGACAACAAAATTGTCGATCACCGCCCTTGATTTGCCCTTCTGTAGCCATCACCAGAGCCAAACCGATTAGATTCAAtg   <  5:74079/147‑1 (MQ=255)
                                                                                                                                                   gcaagacacgaggctacattattacactcagagtttttgtctattctgaaattgtttaaatgtgaatcgaatcacaatcgttcggggagcaatattaaatgctttttttaaagattataaattacgtaagaattttaatgtttaaaaa  <  4:381382‑M1/148‑148 (MQ=255)
                                                                                                                                                   gcaagacacgaggctacattattacactcagagtttttgtctattctgaaattgtttaaatgtgaatcgaatcacaatcgttcggggagcaatattaaatgctttttttaaagattataaattacgtaagaattttaatgtttaaaaa  <  6:422247‑M1/148‑148 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
CAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTGTGATTCGATTCACATTTAAACAATTTCAGAATAGACAAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTGACAACAAAATTGTCGATCACCGCCCTTGATTTGCCCTTCTGTAGCCATCACCAGAGCCAAACCGATTAGATTCAATGT  >  NC_000913/3888264‑3888558

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.