BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4003233 =	87 (0.970)	4 (0.050)	4/230	NT	4.8%	intergenic (‑40/+55)	yigG/rarD	PRK11371 family inner membrane protein/putative chloramphenical resistance permease
*	?	NC_000913	4003267 =	76 (0.910)	4 (0.050)	4/230	NT	4.8%	intergenic (‑74/+21)	yigG/rarD	PRK11371 family inner membrane protein/putative chloramphenical resistance permease
Rejected: Frequency below/above cutoff threshold.

Only 100 of 131 total aligned reads displayed.

AAAAAGATAATAAGAAAGGCAAAAATGAAATTTATTAAAATAAATGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATC  >  NC_000913/4003087‑4003377

aaaaaGATAATAAGAAAGGCAAAAATGAAATTTATTAAAATAAATGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCaa                                                                                                                                                 <  6:380000/148‑1 (MQ=255)

aaaaaGATAATAAGAAAGGCAAAAATGAAATTTATTAAAATAAATGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCa                                                                                                                                                  <  8:3099/147‑1 (MQ=255)

 ggctgtgacgttttatggtgaaaaaccgggtgccgataagatggtgactttcgcctttatttgggtggcgctggcaatttttgtgatggatgcgatttatacgcagcgtagaacgtccaaataaaaaataaatatattctgaaaaaa                                                                                                                                                 <  4:345120‑M1/2‑1 (MQ=255)

 ggctgtgacgttttatggtgaaaaaccgggtgccgataagatggtgactttcgcctttatttgggtggcgctggcaatttttgtgatggatgcgatttatacgcagcgtagaacgtccaaataaaaaataaatatattctgaaaaAat                                                                                                                                                >  3:365409‑M1/146‑148 (MQ=255)

 aaaaGATAATAAGAAAGGCAAAAATGAAATTTATTAAAATAAATGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAat                                                                                                                                                <  3:294694/148‑1 (MQ=255)

 aaaaGATAATAAGAAAGGCAAAAATGAAATTTATTAAAATAAATGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAat                                                                                                                                                <  8:256520/148‑1 (MQ=255)

 aaaaGATAATAAGAAAGGCAAAAATGAAATTTATTAAAATAAATGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAat                                                                                                                                                <  3:98507/148‑1 (MQ=255)

 aaaaGATAATAAGAAAGGCAAAAATGAAATTTATTAAAATAAATGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAat                                                                                                                                                <  7:119481/148‑1 (MQ=255)

 aaaaGATAATAAGAAAGGCAAAAATGAAATTTATTAAAATAAATGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAat                                                                                                                                                <  4:326966/148‑1 (MQ=255)

 aaaaGATAATAAGAAAGGCAAAAATGAAATTTATT‑AAATAAATGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTTCATCCTTGTATGAGTCTCCGGTCAGCAGGGCAata                                                                                                                                               >  2:438309/1‑148 (MQ=255)

  gctgtgacgttttatggtgaaaaaccgggtgccgataagatggtgactttcgcctttatttgggtggcgctggcaatttttgtgatggatgcgatttatacgcagcgtagaacgtccaaataaaaaataaatatattctgaaaaaa                                                                                                                                                 >  6:328167‑M1/145‑146 (MQ=255)

     gtgacgttttatggtgaaaaaccgggtgccgataagatggtgactttcgcctttatttgggtggcgctggcaatttttgtgatggatgcgatttatacgcagcgtagaacgtccaaataaaaaataaatatattctgaaaaAATATGc                                                                                                                                            <  7:115996‑M1/7‑1 (MQ=255)

      tgacgttttatggtgaaaaaccgggtgccgataagatggtgactttcgcctttatttgggtggcgctggcaatttttgtgatggatgcgatttatacgcagcgtagaacgtccaaataaaaaataaatatattctgaaaaAATATGcc                                                                                                                                           <  1:438309‑M1/8‑1 (MQ=255)

      ataataAGAAAGGCAAAAATGAAATTTATTAAAATAAATGAAAATATATAACGACGTCTGGAAATCTTACCTTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGca                                                                                                                                           >  1:162641/1‑147 (MQ=255)

       taataaGAAAGGCAAAAATGAAATTTATTAAAATAAATGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGccc                                                                                                                                          <  8:186767/148‑1 (MQ=255)

       taataaGAAACGCAAAAATTAAATTTAATAAAATAAATGAAAATATATAACGAAGTCTGGAAATCATACCGGTAGATGTTGGGATTAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGccc                                                                                                                                          <  4:9252/148‑1 (MQ=255)

       gacgttttatggtgaaaaaccgggtgccgataagatggtgactttcgcctttatttgggtggcgctggcaatttttgtgatggatgcgatttatacgcagcgtagaacgtccaaataaaaaataaatatattctgaaaaAat                                                                                                                                                >  4:170875‑M1/140‑142 (MQ=255)

       gacgttttatggtgaaaaaccgggtgccgataagatggtgactttcgcctttatttgggtggcgctggcaatttttgtgatggatgcgatttatacgcagcgtagaacgtccaaataaaaaataaatatattctgaaaaAat                                                                                                                                                <  3:170875‑M1/3‑1 (MQ=255)

       gacgttttatggtgaaaaaccgggtgccgataagatggtgactttcgcctttatttgggtggcgctggcaatttttgtgatggatgcgatttatacgcagcgtagaacgtccaaataaaaaataaatatattctgaaaaAATATGcc                                                                                                                                           <  4:125369‑M1/8‑1 (MQ=255)

       gacgttttatggtgaaaaaccgggtgccgataagatggtgactttcgcctttatttgggtggcgctggcaatttttgtgatggatgcgatttatacgcagcgtagaacgtccaaataaaaaataaatatattctgaaaaAATATGcc                                                                                                                                           <  8:50900‑M1/8‑1 (MQ=255)

           aaGAAAGGCAAAAATGAAATTTATTAAAATAAATGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCActc                                                                                                                                      >  7:232015/1‑148 (MQ=255)

           aaGAAAGGCAAAAATGAAATTTATAAAAATAAATGAAAATATTTAACCACGTCTGGAAATCTTACCGATAGATGTGGGGATAAAAATACGTAACATAAATTTTACATCCTAGTATGAGTCTCCGGTAAGAATGGAAATATGccctatc                                                                                                                                      >  5:378361/1‑144 (MQ=255)

            ataaaGGCAATAATGAAATTTATTAATATAAATGAAAATATATAACGACGTCTGGATATCTTACCGTTAGATGTTGGGATATATATACGTAACATAAATTTTTCTTCCTTTTATGAGTCTCCGGTCAGCATGGCAATATGCCctctct                                                                                                                                     <  4:172950/146‑1 (MQ=255)

             gAAAGGCAAAAATGAAATTTATTAAAATAAATGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACtctc                                                                                                                                    <  5:212776/148‑1 (MQ=255)

             gAAAGGCAAAAATGAAATTTATTAAAATAAATGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACtctc                                                                                                                                    <  3:389010/148‑1 (MQ=255)

             gAAAGGCAAAAATGAAATTTATTAAAATAAATGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACtctc                                                                                                                                    <  8:90040/148‑1 (MQ=255)

              aaaGGCAAAAATGAAATTTATTAAAATAAATGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCa                                                                                                                                   >  1:291344/1‑148 (MQ=255)

               atggCAAAAATGAAATTTATTAACATAAATGAAAATATATAACGACGTCTGTACTTCTTACCGGTTGATGTTGGGATAAATATACGGAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCAt                                                                                                                                  <  4:43762/146‑1 (MQ=255)

               aaGGCAAAAATGAAATTTATTAAAATAAATGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCAt                                                                                                                                  <  6:185624/148‑1 (MQ=255)

                aGGCAAAAATGAAATTTATTAAAATAAATGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGCTAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATg                                                                                                                                 <  5:25278/148‑1 (MQ=255)

                 ggCAAAAATGAAATTTATTAAAATAAATGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATg                                                                                                                                 >  2:368785/1‑147 (MQ=255)

                 ggCAAAAATGAAATTTATTAAAATAAATGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGc                                                                                                                                <  1:336731/148‑1 (MQ=255)

                     aaaaTGAAATTTATTAAAATAAATGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGAAATATGCCCACTCTCATGCAaga                                                                                                                            <  1:276032/148‑1 (MQ=255)

                      aaaTGAAATTTATTAAAATAAATGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAat                                                                                                                                                <  7:331423/127‑1 (MQ=255)

                      aaaTGAAATTTATTAAAATAAATGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAat                                                                                                                                                >  8:331423/1‑127 (MQ=255)

                       aaTGAAATTTATTAAAATAAATGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGt                                                                                                                          >  8:359771/1‑148 (MQ=255)

                        aTGAAATTTATTAAAATAAATGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTc                                                                                                                         <  1:79482/148‑1 (MQ=255)

                         tGAAATTTATTAAAATAAATGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCg                                                                                                                        <  6:108054/148‑1 (MQ=255)

                               tgccgataagatggtgactttcgcctttatttgggtggcgctggcaatttttgtgatggatgcgatttatacgcagcgtagaacgtccaaataaaaaataaatatattctgaaaaa                                                                                                                                                  <  8:116599‑M1/1‑1 (MQ=255)

                               tgccgataagatggtgactttcgcctttatttgggtggcgctggcaatttttgtgatggatgcgatttatacgcagcgtagaacgtccaaataaaaaataaatatattctgaaaaa                                                                                                                                                  >  7:116599‑M1/116‑116 (MQ=255)

                                  ttaAAATAAATGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATAttt                                                                                                                <  1:368785/147‑1 (MQ=255)

                                     aaataaatGAAACTATATCACCACCTCTGGAAATCTTACCGTAAGATGTGTGCATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTc                                                                                                            <  4:32364/148‑1 (MQ=255)

                                      aataaatGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATAtttttt                                                                                                             >  4:24836/1‑146 (MQ=255)

                                        taaatGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTAACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGa                                                                                                         <  1:379513/148‑1 (MQ=255)

                                               aaaTATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGAATGGCAATATGCCAACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATAtatt                                                                                                  >  5:263808/1‑148 (MQ=255)

                                                aaTATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATAtatt                                                                                                  >  1:49512/1‑147 (MQ=255)

                                                  ttcgcctttatttgggtggcgctggcaatttttgtgatggatgcgatttatacgcagcgtagaacgtccaaataaaaaataaatatattctgaaaaAat                                                                                                                                                >  1:309904‑M1/97‑99 (MQ=255)

                                                  ttcgcctttatttgggtggcgctggcaatttttgtgatggatgcgatttatacgcagcgtagaacgtccaaataaaaaataaatatattctgaaaaAat                                                                                                                                                <  2:309904‑M1/3‑1 (MQ=255)

                                                       ctttatttgggtggcgctggcaatttttgtgatggatgcgatttatacgcagcgtagaacgtccaaataaaaaataaatatattctgaaaaa                                                                                                                                                  >  7:290835‑M1/92‑92 (MQ=255)

                                                       ctttatttgggtggcgctggcaatttttgtgatggatgcgatttatacgcagcgtagaacgtccaaataaaaaataaatatattctgaaaaa                                                                                                                                                  <  8:290835‑M1/1‑1 (MQ=255)

                                                       aaCGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGACAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATAtttattttt                                                                                           >  7:427529/1‑147 (MQ=255)

                                                        acgacgTCTGGAAATCTTAGCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACCGCCTTGTATGAGTCTCCGGTCAGGATGGCCATATGCACCCGCTCATGATAGAGTCGGCAGATTTTTTCAGAAGATAtttttttttta                                                                                         >  2:325321/1‑148 (MQ=255)

                                                         cgacgTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTAAATCCTTGTATGAGTCGCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATTTAttgattttttag                                                                                        >  8:381556/1‑147 (MQ=255)

                                                          tatttgggtggcgctggcaatttttgtgatggatgcgatttatacgcagcgtagaacgtccaaataaaaaataaatatattctgaaaaa                                                                                                                                                  >  1:433541‑M1/89‑89 (MQ=255)

                                                          tatttgggtggcgctggcaatttttgtgatggatgcgatttatacgcagcgtagaacgtccaaataaaaaataaatatattctgaaaaa                                                                                                                                                  <  2:433541‑M1/1‑1 (MQ=255)

                                                          gacgTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATAtttattttttatt                                                                                       <  8:252681/148‑1 (MQ=255)

                                                           atttgggtggcgctggcaatttttgtgatggatgcgatttatacgcagcgtagaacgtccaaataaaaaataaatatattctgaaaaa                                                                                                                                                  >  3:17251‑M1/88‑88 (MQ=255)

                                                              tCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGa                                                                                   <  2:203442/148‑1 (MQ=255)

                                                               cTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGAc                                                                                  >  4:181653/1‑148 (MQ=255)

                                                                 ggAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGt                                                                                >  1:178393/1‑148 (MQ=255)

                                                                  taaaTCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGt                                                                                <  3:95360/146‑1 (MQ=255)

                                                                  gAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTTTATTAGTCTCCGGTCATCATGGCTATATGCCCACTCTCATGCAAGTGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGt                                                                                <  1:93834/147‑1 (MQ=255)

                                                                  gAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGt                                                                                <  2:96036/147‑1 (MQ=255)

                                                                   aaaTCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATAtattta                                                                                                <  3:302879/130‑1 (MQ=255)

                                                                   aaaTCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTc                                                                              >  4:367447/1‑148 (MQ=255)

                                                                    aaTCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCt                                                                             <  1:386432/148‑1 (MQ=255)

                                                                    aaTCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCt                                                                             <  3:181653/148‑1 (MQ=255)

                                                                       cTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAat                                                                                                                                                >  8:279986/1‑78 (MQ=255)

                                                                       cTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAat                                                                                                                                                <  7:279986/78‑1 (MQ=255)

                                                                          gcaatttttgtgatggatgcgatttatacgcagcgtagaacgtccaaataaaaaataaatatattctgaaaaAATATGCCCACTCTCATCCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTg                                                                       >  1:440812‑M1/73‑148 (MQ=255)

                                                                          aCCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCgg                                                                                                                       >  2:251210/1‑100 (MQ=255)

                                                                            cGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCg                                                                     >  7:153795/1‑148 (MQ=255)

                                                                              ttAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGta                                                                   >  5:134410/1‑148 (MQ=255)

                                                                               tAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCCGCGta                                                                   >  6:179667/1‑147 (MQ=255)

                                                                                           tAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGcatcca                                                      >  8:217790/1‑148 (MQ=255)

                                                                                               tataCGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATca                                                   >  8:115996/1‑147 (MQ=255)

                                                                                                   cGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGa                                                                                                         >  5:353600/1‑89 (MQ=255)

                                                                                                   cGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGa                                                                                                         <  6:353600/89‑1 (MQ=255)

                                                                                                     tAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAAt                                            <  2:49512/148‑1 (MQ=255)

                                                                                                      aaCATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAAtt                                           >  2:218550/1‑148 (MQ=255)

                                                                                                       aCATAACTTTTACATCCTTGTCTGAGTCTCCGGGCAGCATGGCAATATGCCCACTCTCATTCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTg                                          <  2:398361/148‑1 (MQ=255)

                                                                                                       aCATAAATTTTACATCCTTGTATGAGTCTCCGCTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTg                                          <  2:398363/148‑1 (MQ=255)

                                                                                                       aCAAAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTg                                          >  8:197224/1‑148 (MQ=255)

                                                                                                        cATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGc                                         <  3:392931/148‑1 (MQ=255)

                                                                                                        cATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGc                                         >  1:400227/1‑148 (MQ=255)

                                                                                                         aaaaaTTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGcc                                        <  7:197224/146‑1 (MQ=255)

                                                                                                          tAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCCGCGTATAAATCGCATCCATCACAAAAATTGCCa                                       <  5:179667/148‑1 (MQ=255)

                                                                                                             aTTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAgcg                                    <  6:71979/148‑1 (MQ=255)

                                                                                                                ttACATCCTTGTATGAGTCTCCGGTCAGCATGACAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGcc                                  <  8:427529/147‑1 (MQ=255)

                                                                                                                        ttGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATAATTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCCTCCATCACAAAAATTGCCAGCGCCACCCAAATa                         <  3:307350/148‑1 (MQ=255)

                                                                                                                           tATGAGTCTACGGTCAGCATGGCAATATGCCCACTCTCATGCAAGACTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAg                      <  6:91916/148‑1 (MQ=255)

                                                                                                                            aTGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCa                                 <  8:288731/136‑1 (MQ=255)

                                                                                                                            aTGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCa                                 >  7:288731/1‑136 (MQ=255)

                                                                                                                            aTGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGAAGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAgg                     >  1:193099/1‑148 (MQ=255)

                                                                                                                               aGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCg                   <  8:153795/147‑1 (MQ=255)

                                                                                                                                    ccGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGt              >  1:245813/1‑147 (MQ=255)

                                                                                                                                       gTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCAc           >  1:80803/1‑147 (MQ=255)

                                                                                                                                        tCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCa         >  7:271911/1‑148 (MQ=255)

                                                                                                                                          atcATTGCAATATTCCCACACTCAAGCAAGATTCGGCATAATTTTTCACAATAAATTTAATTTTTATTTGGCCGGTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCCGCGCCCCCCAAATAAAGGCCAAATGCACCATc       <  2:80803/146‑1 (MQ=255)

                                                                                                                                               ggCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATc  >  1:412686/1‑148 (MQ=255)

AAAAAGATAATAAGAAAGGCAAAAATGAAATTTATTAAAATAAATGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATC  >  NC_000913/4003087‑4003377

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.