| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 564,107 | IS2 (+) +5 bp | coding (370‑374/633 nt) | sfmZ ← | response regulator family protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 381260 = | NA (NA) | 40 (1.180) | 38/254 | 0.1 | 100% | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 564111 | 0 (0.000) | coding (370/633 nt) | sfmZ | response regulator family protein | |||||
| * | ? | NC_000913 | = 382590 | NA (NA) | 27 (0.790) | 21/256 | 0.8 | 100% | noncoding (1331/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 564107 = | 0 (0.000) | coding (374/633 nt) | sfmZ | response regulator family protein | |||||
GGCAATTTCTTTATTAGATAATCCGCTAACCAGATAACGTAATATGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACTTTCA > NC_000913/563968‑564248 | ggCAATTTCTTTATTAGATAATCCGCTAACCAGATAACGTAATATGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtaga > 4:44368‑M2/1‑144 (MQ=255) tttCTTTATTAGATAATCCGCTAACCAGATAACGTAATATGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggcc < 2:27427‑M2/149‑11 (MQ=255) tttCTTTATTAGATAATCCGCTAACCAGATAACGTAATATGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGATAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggcc < 6:43037‑M2/149‑11 (MQ=255) aGATAATCCGCTAACCAGATAACGTAATATGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatct < 2:22377‑M2/149‑21 (MQ=255) gATAATCCGCTAACCAGATAACGTAATATGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGCTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctc > 5:43037‑M2/1‑128 (MQ=255) cTAACCAGATAACGTAATATGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaac < 4:129056‑M2/148‑30 (MQ=255) aCCAGATAACGTAATATGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaa > 1:27427‑M2/1‑116 (MQ=255) tggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGCGTATCCGGAGAGGATCATCTGAACGGCATGAAAAata < 2:65740‑M2/39‑1 (MQ=255) tatGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataag > 6:97460‑M2/1‑102 (MQ=255) gTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtga < 1:108101‑M2/148‑51 (MQ=255) ttCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagact > 2:85003‑M2/1‑93 (MQ=255) ttCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagact < 1:85003‑M2/99‑7 (MQ=255) cACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtctt > 1:22377‑M2/1‑91 (MQ=255) aGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagaatg < 3:35145‑M2/91‑8 (MQ=255) aGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgata > 2:86982‑M2/1‑80 (MQ=255) aGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgata < 1:86982‑M2/132‑53 (MQ=255) gCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttt < 1:149828‑M2/148‑70 (MQ=255) cacaGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagttttta > 3:129056‑M2/1‑78 (MQ=255) cacaGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagttttta > 4:75834‑M2/1‑78 (MQ=255) caGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctga < 2:27690‑M2/92‑17 (MQ=255) caGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctga > 1:27690‑M2/1‑76 (MQ=255) tgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTa < 5:74174‑M2/60‑1 (MQ=255) tgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTa > 6:74174‑M2/65‑124 (MQ=255) gTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcat < 4:29851‑M2/149‑82 (MQ=255) tATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaa > 1:85607‑M2/1‑61 (MQ=255) tATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaa < 2:85607‑M2/120‑60 (MQ=255) ttCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaa < 1:76888‑M2/147‑89 (MQ=255) gtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCa < 5:121737‑M2/99‑1 (MQ=255) taatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACaaaa > 7:43504‑M2/49‑117 (MQ=255) taatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACaaaa < 8:43504‑M2/69‑1 (MQ=255) tgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGa > 2:39841‑M2/46‑109 (MQ=255) tgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGa < 1:39841‑M2/64‑1 (MQ=255) aTTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgat > 2:76888‑M2/1‑49 (MQ=255) aTTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAta < 2:32257‑M2/51‑3 (MQ=255) aTTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAta > 1:32257‑M2/1‑49 (MQ=255) tGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtct < 7:22780‑M2/147‑105 (MQ=255) gtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAatat > 7:77642‑M2/38‑77 (MQ=255) gtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAatat < 8:77642‑M2/40‑1 (MQ=255) tgataacagatgtctggaaatataggggcaaatccaGTGTAt > 3:78209‑M2/37‑42 (MQ=255) tgataacagatgtctggaaatataggggcaaatccaGTGTAt < 4:78209‑M2/6‑1 (MQ=255) cTTTTTATATAGTTAATCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattg > 1:139787‑M2/1‑41 (MQ=255) cTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagg > 2:149828‑M2/1‑41 (MQ=255) cTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattg < 2:139787‑M2/124‑84 (MQ=255) aacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGAt > 1:151379‑M2/33‑149 (MQ=255) tatataGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccg > 6:160112‑M2/1‑36 (MQ=255) cagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGc < 5:67094‑M2/83‑1 (MQ=255) cagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGc > 6:67094‑M2/31‑113 (MQ=255) ttAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacg > 8:22780‑M2/1‑29 (MQ=255) tggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGCCAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGATTTCgatgat > 7:91262‑M2/23‑148 (MQ=255) aaGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaat < 7:15959‑M2/60‑34 (MQ=255) aaGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaat > 8:15959‑M2/1‑27 (MQ=255) ggaaatataggggcaaatccaGTGTATCCGGAGAGGTTCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCt < 8:117238‑M2/114‑1 (MQ=255) ggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCt > 7:142357‑M2/22‑135 (MQ=255) ggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCt > 7:117238‑M2/22‑135 (MQ=255) ggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCt < 8:142357‑M2/114‑1 (MQ=255) aGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgca > 2:108101‑M2/1‑26 (MQ=255) gaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATaa > 2:169714‑M2/21‑148 (MQ=255) gTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaac > 3:141624‑M2/1‑23 (MQ=255) gTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaac < 4:141624‑M2/112‑90 (MQ=255) tCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtc > 4:48641‑M2/1‑20 (MQ=255) cTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagttttaagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtac < 8:138690‑M2/149‑133 (MQ=255) gcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACttt > 5:23226‑M2/10‑149 (MQ=255) tatccaGTGTATCATGAGAGGATCATCTGAACGTCATGAAAAATATCATTCTGATCATTGCATTTACTGTCATAACCGTTAGCACCAGCTTGTATCGCTCTGCCATCATAAAAGCATTCTGATTTCGATGATAATAATATCACTTTCa < 2:151379‑M2/142‑1 (MQ=255) | GGCAATTTCTTTATTAGATAATCCGCTAACCAGATAACGTAATATGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACTTTCA > NC_000913/563968‑564248 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |