breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,296,0600CT44.0% 12.5 / 28.0 25intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
*NC_0009134,591,5000AG26.7% 43.7 / 17.3 30intergenic (‑221/‑157)yjiY/tsrputative transporter/methyl‑accepting chemotaxis protein I, serine sensor receptor
*NC_0009134,591,5010TA26.7% 45.5 / 18.7 30intergenic (‑222/‑156)yjiY/tsrputative transporter/methyl‑accepting chemotaxis protein I, serine sensor receptor
*NC_0009134,591,4980TA25.0% 50.0 / 18.2 32intergenic (‑219/‑159)yjiY/tsrputative transporter/methyl‑accepting chemotaxis protein I, serine sensor receptor
*NC_0009134,591,4990CT25.0% 53.9 / 16.2 32intergenic (‑220/‑158)yjiY/tsrputative transporter/methyl‑accepting chemotaxis protein I, serine sensor receptor
*NC_0009134,549,8660TG22.9% 67.2 / 19.5 35intergenic (+156/+87)fimH/gntPminor component of type 1 fimbriae/fructuronate transporter

Marginal new junction evidence (lowest skew 10 of 42 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3621371 =NA (NA)8 (0.250) 6/242 3.2 100% coding (2180/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3621377 = 0 (0.000)coding (2186/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 2906594 =30 (0.880)5 (0.160) 5/230 3.4 16.2% intergenic (+11/+49) ygcG/eno TPM domain protein, putative phosphatase/enolase
?NC_000913 2906624 = 25 (0.810)intergenic (+41/+19) ygcG/eno TPM domain protein, putative phosphatase/enolase
* ? NC_000913 = 359642837 (1.080)5 (0.150) 5/242 3.5 12.5% intergenic (‑25/+23) livH/livK branched‑chain amino acid ABC transporter permease/leucine transporter subunit
?NC_000913 = 3596435 35 (1.080)intergenic (‑32/+16) livH/livK branched‑chain amino acid ABC transporter permease/leucine transporter subunit
* ? NC_000913 2077179 =35 (1.020)5 (0.160) 5/240 3.5 15.0% coding (68/369 nt) cbeA CP4‑44 prophage; cytoskeleton bundling‑enhancing factor A; CbtA antitoxin
?NC_000913 2077221 = 24 (0.750)coding (110/369 nt) cbeA CP4‑44 prophage; cytoskeleton bundling‑enhancing factor A; CbtA antitoxin
* ? NC_000913 = 1428264NA (NA)14 (0.430) 5/244 3.6 100% noncoding (531/1196 nt) IS5 repeat region
?NC_000913 = 2066866 0 (0.000)noncoding (488/1195 nt) IS5 repeat region
* ? NC_000913 1396531 =NA (NA)14 (0.430) 5/244 3.6 NA noncoding (488/1195 nt) IS5 repeat region
?NC_000913 = 1428264 NA (NA)noncoding (531/1196 nt) IS5 repeat region
* ? NC_000913 3635910 =41 (1.200)4 (0.130) 4/232 3.8 9.3% intergenic (+17/+298) yhiM/yhiN acid resistance protein, inner membrane/putative oxidoreductase
?NC_000913 3635946 = 41 (1.320)intergenic (+53/+262) yhiM/yhiN acid resistance protein, inner membrane/putative oxidoreductase
* ? NC_000913 4011673 =37 (1.080)4 (0.120) 4/242 3.9 11.1% coding (598/900 nt) yigM putative inner membrane EamA‑like transporter
?NC_000913 4011714 = 29 (0.900)coding (639/900 nt) yigM putative inner membrane EamA‑like transporter
* ? NC_000913 = 344251345 (1.310)4 (0.120) 4/242 3.9 8.6% intergenic (‑42/+105) rpsM/rpmJ 30S ribosomal subunit protein S13/50S ribosomal subunit protein L36
?NC_000913 = 3442518 42 (1.300)intergenic (‑47/+100) rpsM/rpmJ 30S ribosomal subunit protein S13/50S ribosomal subunit protein L36
* ? NC_000913 2904902 =34 (0.990)4 (0.130) 4/238 3.9 11.7% coding (517/672 nt) queE 7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis
?NC_000913 2904942 = 29 (0.910)coding (477/672 nt) queE 7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis