| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1823773 | 63 (0.830) | 4 (0.060) | 4/254 | NT | 6.0% | coding (259/888 nt) | cho | endonuclease of nucleotide excision repair |
| ? | NC_000913 | = 1823780 | 65 (0.890) | coding (266/888 nt) | cho | endonuclease of nucleotide excision repair | |||||
AACATCCGCAGCCGCGTCCTTTCTCATTTACGTACCCCGGATGAAGCCGCCATGCTACGGCAATCCCGACGGATCAGCTGGATATGTACCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1823680‑1823773‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgATTTCACCGGCGGTACATATCCAGCTGATCCGTCGGGATTGCCGTAGCATGGCGGCTTCATCCGGGGTACGTAAATGAGAAAGGACGCGGCTGCGGATGTTAACGCTTTTGCCGATATAGAGCGGCATGGTGTCACTTTCACCATGA < NC_000913/1823780‑1823634 AACATCCGCAGCCGCGTCCTTTCTCATTTACGTACCCCGGATGAAGCCGCCATGCTACGGCAATCCCGACGGATCAGCTGGATATGTACCGCCGATTTCACCGGCGGTACATATCCAGCTGATCCGTCGGGATTGCCGTAG > 1:49981/1‑141AACATCCGCAGCCGCGTCCTTTCTCATTTACGTACCCCGGATGAAGCCGCCATGCTACGGCAATCCCGACGGATCAGCTGGATATGTACCGCCGATTTCACCGGCGGTACATATCCAGCTGATCCGTCGGGATTGCCGTAG < 2:49981/141‑1 ATCCGCAGCCGCGTCCTTTCTCATTTACGTACCCCGGATGCAGCCGCCATGCTACGGCAATCCCGACGGATCAGCTGGATATGTACCGCCGATTTCACCGGCGGTACATATCCAGCTGA < 5:134752/119‑1 ATCCGCAGCCGCGTCCTTTCTCATTTACGTACCCCGGATGAAGCCGCCATGCTACGGCAATCCCGACGGATCAGCTGGATATGTACCGCCGATTTCACCGGCGGTACATATCCAGCTGA > 6:134752/1‑119 GCCGATTTCACCGGCGGTACATATCCAGCTGATCCGTCGGGATTGCCGTAGCATGGCGGCTTCATCCGGGGTACGTAAATGAGAAAGGACGCGGCTGCGGATGTTAACGCTTTTGCCGATATAGAGCGGCATGGTGTCACTTTCACCAT > 6:149057/1‑149 GCCGATTTCACCGGCGGTACATATCCAGCTGATCCGTCGGGATTGCCGTAGCATGGCGGCTTCATCCGGGGTACGTAAATGAGAAAGGACGCGGCGGCGGATGTTAACGCTTTTGCCGATATAGAGCGGCATGGTGTCACTTTCACCAT < 5:236879/149‑1 CCGATTTCACCGGCGGTACATATCCAGCTGATCCGTCGGGATTGCCGTAGCATGGCGGCTTCATCCGGGGTACGTAAATGAGAAAGGACGCGGCTGCGGATGTTAACGCTTTTGCCGATATAGAGCGGCATGGTGTCACTTTCACCAT > 8:52969/1‑148 CGATTTCACCGGCGGTACATATCCAGCTGATCCGTCGGGATTGCCGTAGCATGGCGGCTTCATCCGGGGTACGTAAATGAGAAAGGACGCGGCTGCGGATGTTAACGCTTTTGCCGATATAGAGCGGCATGGTGTCACTTTCACCATGA < 3:70821/149‑1 AACATCCGCAGCCGCGTCCTTTCTCATTTACGTACCCCGGATGAAGCCGCCATGCTACGGCAATCCCGACGGATCAGCTGGATATGTACCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1823680‑1823773‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgATTTCACCGGCGGTACATATCCAGCTGATCCGTCGGGATTGCCGTAGCATGGCGGCTTCATCCGGGGTACGTAAATGAGAAAGGACGCGGCTGCGGATGTTAACGCTTTTGCCGATATAGAGCGGCATGGTGTCACTTTCACCATGA < NC_000913/1823780‑1823634 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |