mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 661,956 | 0 | G | . | 64.0% | 48.1 / 149.6 | 75 | coding (323/642 nt) | lipB | octanoyltransferase; octanoyl‑[ACP]:protein N‑octanoyltransferase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 33.0% | 105.5 / 78.2 | 91 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 380,013 | 0 | G | . | 26.5% | 82.9 / 28.9 | 35 | intergenic (‑132/+56) | frmR/yaiO | regulator protein that represses frmRAB operon/outer membrane protein |
| Marginal new junction evidence (lowest skew 10 of 26 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3351196 | 126 (1.140) | 20 (0.190) | 16/278 | 5.3 | 15.9% | coding (1830/2337 nt) | arcB | aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB |
| ? | NC_000913 | 3351275 = | 89 (0.830) | coding (1751/2337 nt) | arcB | aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB | |||||
| * | ? | NC_000913 | 3423376 = | 148 (1.340) | 24 (0.230) +TTGATGT |
9/272 | 7.1 | 14.7% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4213155 | 144 (1.310) | noncoding (116/120 nt) | rrfE | 5S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | 3423376 = | 148 (1.340) | 22 (0.210) +TTGATGT |
8/272 | 7.5 | 13.9% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | 3423672 = | 138 (1.250) | noncoding (116/120 nt) | rrfD | 5S ribosomal RNA of rrnD operon | |||||
| * | ? | NC_000913 | 3948426 = | 142 (1.290) | 6 (0.060) | 6/268 | 8.2 | 4.3% | intergenic (+2/+23) | yifE/yifB | UPF0438 family protein/magnesium chelatase family protein and putative transcriptional regulator |
| ? | NC_000913 | 3948449 = | 132 (1.280) | coding (1521/1521 nt) | yifB | magnesium chelatase family protein and putative transcriptional regulator | |||||
| * | ? | NC_000913 | 1169369 = | 106 (0.960) | 6 (0.060) | 6/264 | 8.2 | 5.5% | intergenic (+39/+43) | bhsA/ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| ? | NC_000913 | 1169396 = | 110 (1.080) | intergenic (+66/+16) | bhsA/ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein | |||||
| * | ? | NC_000913 | = 4168341 | 97 (0.880) | 5 (0.050) | 5/266 | 8.6 | 5.3% | intergenic (+141/‑31) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913 | = 4168363 | 87 (0.850) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | = 3852844 | 144 (1.310) | 5 (0.050) | 5/264 | 8.6 | 3.6% | intergenic (‑60/+46) | ilvB/ivbL | acetolactate synthase 2 large subunit/ilvB operon leader peptide |
| ? | NC_000913 | = 3852855 | 134 (1.320) | intergenic (‑71/+35) | ilvB/ivbL | acetolactate synthase 2 large subunit/ilvB operon leader peptide | |||||
| * | ? | NC_000913 | 2729475 = | 68 (0.620) | 7 (0.070) | 5/266 | 8.6 | 8.5% | intergenic (‑31/+141) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | = 4168363 | 87 (0.850) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | 2729443 = | 50 (0.450) | 5 (0.050) | 5/266 | 8.6 | 7.5% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913 | = 4168331 | 77 (0.750) | intergenic (+131/‑41) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | 2729443 = | 50 (0.450) | 7 (0.070) | 5/266 | 8.6 | 11.2% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913 | 2729485 = | 65 (0.630) | intergenic (‑41/+131) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon | |||||