New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 521828	31 (0.960)	6 (0.200)	6/236	3.0	18.0%	coding (1413/2415 nt)	ybbP	putative ABC transporter permease
	?	NC_000913	= 521858	26 (0.860)					coding (1443/2415 nt)	ybbP	putative ABC transporter permease
Rejected: Frequency below/above cutoff threshold.

GATGCTGCTGAATGTACTTCGCCGCATGACGCTGAAATCGCTGCCTCTGCGCCTGGCGGTTAGCCGCCTGTTACGTCAGCCGTGGTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCA‑‑‑CTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCGAACTACTTTTTAATTAACATCGCCACAGAACAGGTAGCACCGCTAAAAGCGTTCCTCGCGGAACATCAGATAGTCCCGGAATCGTTT  >  NC_000913/521684‑521972                                                                                                                                                    |                                                                                                                                                 gATGCTGCTGAATGTACTTCGCCGCATGACGCTGAAATCGCTGCCTCTGCGCCTGGCGGTTAGCCGCCTGTTAAGTCAGCCGTGGTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCA‑‑‑CTGCTGCTGgt                                                                                                                                                <  5:34991/147‑1 (MQ=255)      tgctgAATGTACTTCGCCGCATGACGCTGAAATCGCTGCCTCTGCGCCTGGCGGTTAGCCGCCTGTTACGTCAGCCGTGGTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCA‑‑‑CTGCTGCTGGTGTTGCGt                                                                                                                                         >  3:78303/1‑149 (MQ=255)            aTGTACTTCGCCGCATGACGCTGAAATCGCTGCCTCTGCGCCTGGCGGTTAGCCGCCTGTTACGTCAGCCGTCGTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCA‑‑‑CTGCTGCTGGTGTTGCGTGGCGAt                                                                                                                                   <  8:28137/149‑1 (MQ=255)                 cTTCGCCGCATGACGCTGAAATCGCTGCCTCTGCGCCTGGCGGTTAGCCGCCTGTTACGTCAGCCGTGGTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCA‑‑‑CTGCTGCTGGTGTTGCGTGGCGATCTGc                                                                                                                               <  2:12719/148‑1 (MQ=255)                 cTTCGCCGCATGACGATGAAATCGCTGACTCTGCGCCTGGCGGTTAGCCGCCTGTTACGTCAGCCGTGGTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCA‑‑‑CTGCTGCTGGTGTTGCGTGGCGATCTGc                                                                                                                               <  4:5432/148‑1 (MQ=255)                  ttCGCCGCATGACGCTGAAATCGCTGCCTCTGCGCCTGGCGGTTAGCCGCCTGTTACGTCAGCCGTGGTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCA‑‑‑CTGCTGCTGGTGtt                                                                                                                                             >  1:142737/1‑133 (MQ=255)                  ttCGCCGCATGACGCTGAAATCGCTGCCTCTGCGCCTGGCGGTTAGCCGCCTGTTACGTCAGCCGTGGTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCA‑‑‑CTGCTGCTGGTGtt                                                                                                                                             <  2:142737/133‑1 (MQ=255)                  ttCGCCGCATGACGCTGAAATCGCTGCCTCTGCGCCTGGCGGTTAGCCGCCTGTTACGTCAGCCGTGGTCAACGTTAAGTCAGCGTTCGGCATTTTCGCTCTCCGTTATGCTGCTCGCA‑‑‑CTGCTGCTGCTGTTGCGTGGCGATCTGCTc                                                                                                                             >  7:104155/1‑149 (MQ=255)                  ttCGCCGCATGACGCTGAAATCGCTGCCTCTGCGCCTGGCGGTTAGCCGCCTGTTACGTCAGCCGTGGTCAACGTTAAGGCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCA‑‑‑CTGCTGCTGccagcggtcgagcagatcgcc                                                                                                                             >  6:22214‑M1/1‑128 (MQ=255)                                cTGAAATCGCTGCCTCTGCGCCTGGCGGTTAGCCGCCTGTTACGTCAGCCGTGGTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCA‑‑‑CTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTTGcagca                                                                                                               >  4:78303‑M2/1‑144 (MQ=255)                                     aTCGCTGCCTCTGCGCCTGGCGGTTAGCCGCCTGTTACGTCAGCCGTGGTCAACGTTAAGGCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCA‑‑‑CTGCTGCTGccagcggtcgagcagatcgccacgcaacaccagcagcagt                                                                                                          <  5:22214‑M1/149‑41 (MQ=255)                                      tCGCTGCCTCTGCGCCTGGCGGTTAGCCGCCTGTTACGTCAGCCGTGGTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCA‑‑‑CTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCt                                                                                                         <  2:138160/149‑1 (MQ=255)                                         cTGCCTCTGCGCCTGGCGGTTAGCCGCCTGTTACGTCAGCCGTGGTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCA‑‑‑CTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTAcc                                                                                                      >  3:3462/1‑149 (MQ=255)                                                tGCGCCTGGCGGTTAGCCGCCTGTTACGTCAGCCGTGGTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCA‑‑‑CTGCTGCTGccagcggtcgagcagatcgccacgcaacaccagcag                                                                                                              >  3:70563‑M1/1‑98 (MQ=255)                                                tGCGCCTGGCGGTTAGCCGCCTGTTACGTCAGCCGTGGTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCA‑‑‑CTGCTGCTGccagcggtcgagcagatcgccacgcaacaccagcag                                                                                                              <  4:70563‑M1/134‑37 (MQ=255)                                                   gcCTGGCGGTTAGCCGCCTGTTACGTCAGCCGTGGTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCA‑‑‑CTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCt                                                                                                                      <  6:140004/123‑1 (MQ=255)                                                   gcCTGGCGGTTAGCCGCCTGTTACGTCAGCCGTGGTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCA‑‑‑CTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCt                                                                                                                      >  5:140004/1‑123 (MQ=255)                                                      tGGCGGTTAGCCGCCTGTTACGTCAGCCGTGGTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCA‑‑‑CTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGccc                                                                                          >  2:34496/1‑148 (MQ=255)                                                                ccgccTGTTACGTCAGCCGTGGTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCACTGCTGCTGCTGccagcggtcgagcagatcgccacgcaacaccagcagcagtgc                                                                                                        <  6:104422‑M1/127‑43 (MQ=255)                                                                ccgccTGTTACGTCAGCCGTGGTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCACTGCTGCTGCTGccagcggtcgagcagatcgccacgcaacaccagcagcagtgc                                                                                                        >  5:104422‑M1/1‑85 (MQ=255)                                                                    cTGTTACGTCAGCCGTGGTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCA‑‑‑CTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCGAACTACTTTttaat                                                                           >  6:128872/1‑149 (MQ=255)                                                                       ttACGTCAGCCGTGGTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCA‑‑‑CTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCGAACTACTTTttaatt                                                                          <  1:100895/147‑1 (MQ=255)                                                                         aCGTCAGCCGTGGTCAACGTTAAGTCAGCTTTAGGCATTTTCGCTCTCCTTTATGCTGCTGGCA‑‑‑CTGATGCTGGTGTTGCGTGGCGATCTGCTCGCCCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCGAACTACTTTTTAATTAAc                                                                       >  8:118220/1‑148 (MQ=255)                                                                                 cGTGGTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCA‑‑‑CTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCGAACTACTTTTTAATTAACATCGCcaca                                                              <  4:3462/149‑1 (MQ=255)                                                                                     gTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCA‑‑‑CTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCGAacta                                                                                    >  2:35614/1‑123 (MQ=255)                                                                                     gTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCA‑‑‑CTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCGAacta                                                                                    <  1:35614/123‑1 (MQ=255)                                                                                     gTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCA‑‑‑CTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCGAACTACTTTttaat                                                                           >  4:34054/1‑132 (MQ=255)                                                                                     gTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCA‑‑‑CTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCGAACTACTTTttaat                                                                           <  3:34054/132‑1 (MQ=255)                                                                                     gTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCA‑‑‑CTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCAAACTACTTTTTAATTAACATCGCCACAGaa                                                           >  6:132461/1‑148 (MQ=255)                                                                                       cAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCA‑‑‑CTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCGAACTACTTTTTAATTAACATCGCCACAGAAc                                                          >  5:72020/1‑147 (MQ=255)                                                                                       cAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCA‑‑‑CTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCGAACTACTTTTTAATTAACATCGCCACAGAAc                                                          <  6:72020/147‑1 (MQ=255)                                                                                               aGTCCGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCA‑‑‑CTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCTAACTACTTTTTAATTAACATCGCCACAGAACAGGTAGCAcc                                                <  5:132461/149‑1 (MQ=255)                                                                                                                         cTTTATGCTGCTGGCA‑‑‑CTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCGAACTACTTTTTAATTAACATCGCCACAGAACAGGTAGCACCGCTAAAAGCGTTCCTCGCGGAACAt                       >  6:74955/1‑148 (MQ=255)                                                                                                                                 tgctgGCA‑‑‑CTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCGAACTACTTTttaattaa                                                                        >  3:91221/1‑91 (MQ=255)                                                                                                                                 tgctgGCA‑‑‑CTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCGAACTACTTTttaattaa                                                                        <  4:91221/91‑1 (MQ=255)                                                                                                                                  gctgGCA‑‑‑CTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCGAACTACTTTTTAATTAACATCGCCACAGAACAGGTAGCACCGCt                                             <  1:81808/117‑1 (MQ=255)                                                                                                                                  gctgGCA‑‑‑CTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCGAACTACTTTTTAATTAACATCGCCACAGAACAGGTAGCACCGCt                                             >  2:81808/1‑117 (MQ=255)                                                                                                                                      gCA‑‑‑CTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGcagcagcagcagtgccagcagcataaaggagagcgaaaatgccgaaagctgacttaacgttgaccacggctgacgtaacaggcgg                               <  6:104422‑M2/127‑86 (MQ=255)                                                                                                                                      gCA‑‑‑CTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGcagcagcagcagtgccagcagcataaaggagagcgaaaatgccgaaagctgacttaacgttgaccacggctgacgtaacaggcgg                               >  5:104422‑M2/1‑42 (MQ=255)                                                                                                                                        a‑‑‑CTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGcagcagcagtgccagcagcataaaggagagcgaaaatgccgaaagctgccttaacgttgaccacggctgacgtaacaggcggctaaccgccaggcgcagaggcagcgat       <  5:22214‑M2/149‑110 (MQ=255)                                                                                                                                               ctgctgGTGTTGCGTGGCGATCTGCTCGACCGCTGGcagcagcagtgccagcagcataaaggagagcgaaaatgccgaaagctgacttaacgttgaccacggctgacgtaacaggcggctaaccgccaggcgca                  >  3:70563‑M2/1‑36 (MQ=255)                                                                                                                                               ctgctgGTGTTGCGTGGCGATCTGCTCGACCGCTGGcagcagcagtgccagcagcataaaggagagcgaaaatgccgaaagctgacttaacgttgaccacggctgacgtaacaggcggctaaccgccaggcgca                  <  4:70563‑M2/134‑99 (MQ=255)                                                                                                                                               ctgctgGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCGAACTACTTTTTAATTAACATCGCCACAGAACAGGTAGCACCGCTAAAAGCGTTCCTCGCGGAACATCAGATAGTCCCGGAATCGtt   <  5:128872/149‑1 (MQ=255)                                                                                                                                                tgctgcaagcggtcgagcagatcgccacgcaacaccagcagcagtgccagcagcataaaggagagcgaaaatgccgaaagctgacttaacgttgaccacggctgacgtaacaggcggctaaccgccaggcgcagaggcagcgatttcag  >  4:78303‑M1/1‑5 (MQ=255)                                                                                                                                                    |                                                                                                                                                 GATGCTGCTGAATGTACTTCGCCGCATGACGCTGAAATCGCTGCCTCTGCGCCTGGCGGTTAGCCGCCTGTTACGTCAGCCGTGGTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCA‑‑‑CTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCGAACTACTTTTTAATTAACATCGCCACAGAACAGGTAGCACCGCTAAAAGCGTTCCTCGCGGAACATCAGATAGTCCCGGAATCGTTT  >  NC_000913/521684‑521972

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.