| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3922214 = | 50 (1.540) | 5 (0.160) | 5/244 | 3.4 | 9.4% | coding (227/381 nt) | atpI | ATP synthase, membrane‑bound accessory factor |
| ? | NC_000913 | 3922243 = | 48 (1.540) | coding (198/381 nt) | atpI | ATP synthase, membrane‑bound accessory factor | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTGCCAGTATCTGAACCACCAGCACCAAAACCCACGTAACGATCAGCGGCAAGAATACCGCCTTTAAAACCGCCAACGCCACCACCAGTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCAGGCAAATATCATAAACAAAACGTTAGGCAGAAAGACTGCCAGGCCCCCGCTTATTGCAGAGACGCCCCAGAAGGGGTCTTTGA > NC_000913/3922086‑3922349 | gTGCCAGTATCTGAACCACCAGCACCAAAACCCACGTAACGATCAGCGGCAAGAATACCGCCTTTAAAACCGCCAACGCCACCACCAGTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCgg > 8:41929/1‑149 (MQ=255) gTATCTGAACCACCAGCACCAAAACCCACGTAACGATCAGCGGCAAGAATACCGCCTTTAAAACCGCCAACGCCACCACCAGTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTc > 1:156384/1‑149 (MQ=255) aaCCACCAGCACCAAAACCCACGTAACGATCAGCGGCAAGAATACCGCCTTTAAAACCGCCAACGCCACCACCAGTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGgt < 7:41929/148‑1 (MQ=255) ccaccaGCACCAAAACCCACGTAACGATCAGCGGCAAGAATACCGCCTTTAAAACCGCCAACGCCACCACCAGTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTa > 4:115319/1‑149 (MQ=255) aCCAAAACCCACGTAACGATCAGCGGCAAGAATACCGCCTTTAAAACCGCCAACGCCACCACCAGTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTg < 1:6976/149‑1 (MQ=255) cAAAACCCACGTAACGATCAGCGGCAAGAATACCGCCTTTAAAACCGCCAACGCCACCACCAGTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCa < 6:135759/114‑1 (MQ=255) cAAAACCCACGTAACGATCAGCGGCAAGAATACCGCCTTTAAAACCGCCAACGCCACCACCAGTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCa > 5:135759/1‑114 (MQ=255) cAAAACCCACGTAACGATCAGCGGCAAGAATACCGCCTTTAAAACCGCCAACGCCACCACCAGTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGt > 7:92513/1‑149 (MQ=255) aCCCACGTAACGATCAGCGGCAAGAATACCGCCTTTAAAACCGCCAACGCCACCACCAGTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGgt > 4:69056/1‑132 (MQ=255) aCCCACGTAACGATCAGCGGCAAGAATACCGCCTTTAAAACCGCCAACGCCACCACCAGTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGgt < 3:69056/132‑1 (MQ=255) aaCGATCAGCGGCAAGAATACCGCCTTTAAAACCGCCAACGCCACCACCAGTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCAGGCa > 1:6582/1‑148 (MQ=255) cAGCGGCAAGAATACCGCCTTTAAAACCGCCAACGCCACCACCAGTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCAGGCAAATATCa > 3:41540/1‑149 (MQ=255) gCGGCAAGAATACCGCCTTTAAAACCGCCAACGCCACCACCAGTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCa < 1:152501/136‑1 (MQ=255) gCGGCAAGAATACCGCCTTTAAAACCGCCAACGCCACCACCAGTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCa > 2:152501/1‑136 (MQ=255) gCAAGAATACCGCCTTTAAAACCGCCAACGCCACCACCAGTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGgt > 4:9868/1‑113 (MQ=255) gCAAGAATACCGCCTTTAAAACCGCCAACGCCACCACCAGTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGgt < 3:9868/113‑1 (MQ=255) gCAAGAATACCGCCTTTAAAACCGCCAACGCCACCACCAGTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCAGGCAAATATCATaaa > 8:115208/1‑148 (MQ=255) aaGAATACCGCCTTTAAAACCGCCAACGCCACCACCAGTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCAGGCAAATATCATAAACa > 2:1562/1‑148 (MQ=255) cGCCTTTAAAACCGCCAACGCCACCACCAGTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCAGGCAAATATCATAAACAAAACGTTAg > 2:11955/1‑149 (MQ=255) gCCTTTAAAACCGCCAACGCCACCACCAGTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCAGGCAAATATCATAAACAAAACGTTAgg < 7:115208/149‑1 (MQ=255) cTTTAAAACCGCCAACGCCACCACCAGTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCAGGCAAATATCATAAACAAAACGTTAgg > 3:116219/1‑147 (MQ=255) gCCAACGCCACCACCAGTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCtt < 1:45118/82‑1 (MQ=255) gCCAACGCCACCACCAGTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCtt > 2:45118/1‑82 (MQ=255) ccAACGCCACCACCAGTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCAGGCAAATATCATAAACAAAACGTTAGGCAGAAAGACTGcc < 4:41540/149‑1 (MQ=255) aaCGCCACCACCAGTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCAGGCAAATATCATAAACAAAACGTTAGGCAGAAAGACTGCCAg < 1:1562/149‑1 (MQ=255) aaCGCCACCACCAGTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCAGGCAAATATCATAAACAAAACGTTAGGCAGAAAGACTGCCAg < 3:115319/149‑1 (MQ=255) aaCGCCACCACCAGTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCAGGCAAATATCATAAACAAAACGTTAGGCAGAAAGACTGCCAg < 1:11955/149‑1 (MQ=255) gCCACCACCAGTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTgg < 6:85691/83‑1 (MQ=255) caccaccaGTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCAGGCAAATATCGTAAACAAAACGTTAGGCAGAAAGACTGCCAGGc < 5:25093/146‑1 (MQ=255) caccaccaGTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCAGGCAAATATCGTAAACAAAACGTTAGGCAGAAAGACTGCCAGGc > 6:25093/1‑146 (MQ=255) caGTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCAGGCAAATATCAt > 3:8013/1‑108 (MQ=255) caGTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCAGGCAAATATCAt < 4:8013/108‑1 (MQ=255) gTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCAGGCAAATATCATAAACAAAACGTTAGGCAGAAAGACTGCCAGGCCCCCGCTTAtt < 7:71926/149‑1 (MQ=255) acacCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGAc > 3:83600/1‑87 (MQ=255) acacCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGAc < 4:83600/87‑1 (MQ=255) cacCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCAGGCAAATATCATAAACAAAACGTTAGGCAGAAAGACTGCCAGGCCCCCGCTTATTGCag < 8:92513/149‑1 (MQ=255) acCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCAGGCAAATATCATAAACAAAACGTTAGGCAGAAAGACTGCCAGGCCCCCGCTTATTGCaga < 2:156384/149‑1 (MQ=255) aTCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCAGGCAAATATCATAAACAAAACGTTAGGCAGAAAGACTGCCAGGCCCCCGCTTATTGCAGAGACGcc > 5:111583/1‑149 (MQ=255) aTCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCAGGCAAATATCATAAACAAAACGTTAGGCAGAAAGACTGCCAGGCCCCCGCTTATTGCAGAGACGcc > 1:26077/1‑149 (MQ=255) gCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCAGGCAAATATCATAAACAAAACGTTAGGCAGAAAGACTGCCAGGCCCCCGCTTATTGCAGAGACGcccc < 4:116219/148‑1 (MQ=255) cAGAACTTTGAAAGCTTCGCCAAATGCGAATGTACAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCAGGCAAATATCATAAACAAAACGTTAGGCAGAAAGACTGCCAGGCCCCCGCTTATTGCAGAGACGCCCCAg > 1:94568/1‑148 (MQ=255) aGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCAGGCAAATATCATAAACAAAACGTTAGGCAGAAAGACTGCCAGGCCCCCGCTTATTGCAGAGACGCCCCAGAAGGGGTCTTTGa < 6:111583/149‑1 (MQ=255) cGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCAGGCAAATATCATAAACAAAACGTTa < 2:132265/86‑1 (MQ=255) cGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCAGGCAAATATCATAAACAAAACGTTa > 1:132265/1‑86 (MQ=255) gCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCAGGCAAATATCAt < 6:154614/72‑1 (MQ=255) gCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCAGGCAAATATCAt > 5:154614/1‑72 (MQ=255) ccAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCAGGCAAata > 7:62169/1‑67 (MQ=255) ccAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCAGGCAAata < 8:62169/67‑1 (MQ=255) cAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCAGGCAAATATCATAAACAAAACGTTAGGCAGAAAGACTGCCAGGCCCCCGCTTATTGCag > 7:107236/1‑117 (MQ=255) cAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCAGGCAAATATCATAAACAAAACGTTAGGCAGAAAGACTGCCAGGCCCCCGCTTATTGCag < 8:107236/117‑1 (MQ=255) | GTGCCAGTATCTGAACCACCAGCACCAAAACCCACGTAACGATCAGCGGCAAGAATACCGCCTTTAAAACCGCCAACGCCACCACCAGTAACACCAACATCGCCAGAACTTTGAAAGCTTCGCCAAATGCGAATGTCCAGGCCACCCGGCCTTTCGCTGGTGTATGCGCCTGGTGACGCCAGGCAAATATCATAAACAAAACGTTAGGCAGAAAGACTGCCAGGCCCCCGCTTATTGCAGAGACGCCCCAGAAGGGGTCTTTGA > NC_000913/3922086‑3922349 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |