| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1999548 | 40 (1.230) | 8 (0.260) | 6/238 | 3.0 | 16.8% | intergenic (‑68/+37) | dcyD/fliY | D‑cysteine desulfhydrase, PLP‑dependent/cystine transporter subunit |
| ? | NC_000913 | = 1999563 | 42 (1.380) | intergenic (‑83/+22) | dcyD/fliY | D‑cysteine desulfhydrase, PLP‑dependent/cystine transporter subunit | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GATAAACTCCAGCCGTGGAAAACGGGTTAAATTATGCAGTGGCATAACAGCCTCCGATGTGTGTTGTTGTGATTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGCATCATTCACTGCTTTCAGCAGGTCCTCATTTCCTTTACGC > NC_000913/1999436‑1999702 | gATAAACTCCAGCCGTGGAAAACGGGTTAAATTATGCAGTGGCATAACAGCCTCCGATGTGTGTTGTTGTGATTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGa < 2:43580/149‑1 (MQ=255) gCCGTGGAAAACGGGTTAAATTATGCAGTGGCATAACAGCCTCCGCTGGGTGGTGTTGGGATTTGCTTATTATGCACGCTGAACACGCGTAAATACAAACGGAGCTAGGGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGCca < 3:76935/149‑1 (MQ=255) tGGAAAACGGGTTAAATTATGCAGTGGCATAACAGCCTCCGATGTGTGTTGTTGTGATTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTc < 1:34552/144‑1 (MQ=255) tGGAAAACGGGTTAAATTATGCAGTGGCATAACAGCCTCCGATGTGTGTTGTTGTGATTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTc > 2:34552/1‑144 (MQ=255) ttAAATTATGCAGTGGCATAACAGCCTCCGATGTGTGTTGTTGTGATTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAAc > 2:9645/1‑148 (MQ=255) aTTATGCAGTGGCATAACAGCCTCCGATGTGTGTTGTTGTGATTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCAttt > 8:54401/1‑149 (MQ=255) aTTATGCAGTGGCATAACAGCCTCCGATGTGTGTTGTTGTGATTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCAttt > 6:77924/1‑149 (MQ=255) ttATGCAGTGGCATAACAGCCTCCGATGTGTGTTGTTGTGATTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGATGATTATTTGTTCACATCAGCACAAAACCAtttt > 3:97244/1‑149 (MQ=255) tGCAGTGGCATAACAGCCTCCGATGTGTGTTGTTGTGATTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCg < 1:9645/149‑1 (MQ=255) gCAGTGGCATAACAGCCTCCGATGTGTGTTGTTGTGATTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCAc < 4:34112/134‑1 (MQ=255) gCAGTGGCATAACAGCCTCCGATGTGTGTTGTTGTGATTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCAc > 3:34112/1‑134 (MQ=255) aGTGGCATAACAGCCTCCGATGTGTGTTGTTGTGATTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGa > 5:113015/1‑148 (MQ=255) gCATAACAGCCTCCGATGTGTGTTGTTGTGATTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCcctttt > 6:120830‑M2/1‑87 (MQ=255) gCATAACAGCCTCCGATGTGTGTTGTTGTGATTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCcctttt < 5:120830‑M2/93‑7 (MQ=255) gCATAACAGCCTCCGATGTGTGTTGTTGTGATTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCa < 7:79799/127‑1 (MQ=255) gCATAACAGCCTCCGATGTGTGTTGTTGTGATTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCa > 8:79799/1‑127 (MQ=255) gttgtGATTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGCCGCTAGTGAAAGCGCCCTTTTTTTTCATTATGCTGATTATTTGTTCACATCAGAACCAAACCATTTTTCGTAAAGGGCTTCCAGAGTGCCATCTTTTTGCa > 2:14049/1‑149 (MQ=255) tgATTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTc < 1:14049/149‑1 (MQ=255) tttCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGc > 5:66764/1‑148 (MQ=255) tCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCaa < 3:25333/148‑1 (MQ=255) tattatGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCccttttttatttacgcgttttcagcgtgcataataagaaaatcacaacaacacacctcggaggctgttatgccactgcataatttaacccgttttccac < 8:122212‑M2/149‑100 (MQ=255) attatGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAAtt < 6:113015/146‑1 (MQ=255) gCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCtttt > 8:25773/1‑126 (MQ=255) gCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCtttt < 7:25773/126‑1 (MQ=255) gCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGCATCAtt > 8:16478/1‑149 (MQ=255) gCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGt > 3:120332/1‑70 (MQ=255) gCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGt < 4:120332/70‑1 (MQ=255) aaCGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCgg > 6:20641/1‑90 (MQ=255) aaCGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCgg < 5:20641/90‑1 (MQ=255) cgcgTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGCATCATTCACTGCTTTcag < 7:54401/149‑1 (MQ=255) gcgTAAATAAAAAAGGCGCTAGTGAAAGCGCccttttttatttacgcgttttcagcgtgcataataagaaaatcacaacaacacacatcggaggctgttatgccactgcataatttaa > 6:157622‑M2/1‑31 (MQ=255) gcgTAAATAAAAAAGGCGCTAGTGAAAGCGCccttttttatttacgcgttttcagcgtgcataataagaaaatcacaacaacacacatcggaggctgttatgccactgcataatttaa < 5:157622‑M2/118‑88 (MQ=255) gcgTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGc > 5:133152/1‑94 (MQ=255) gcgTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGc < 6:133152/94‑1 (MQ=255) cgTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGCATCATTCACTGCTTTcagca < 5:77924/149‑1 (MQ=255) gTAAATAAAAAAGGCGCTAGTGAAAGCGCccttttttatttacgcgttttcagcgtgcataataagaaaatcccaacaccacacatcggaggctgttatgccactgcataatttaacccgttttccacggctggagtttatcg < 7:14714‑M2/143‑115 (MQ=255) gTAAATAAAAAAGGCGCTAGTGAAAGCGCccttttttatttacgcgttttcagcgtgcataataagaaaatcacaacaccacacatcggaggctgttatgccactgcataatttaacccgttttccacggctggagtttatcg < 7:12564‑M2/143‑115 (MQ=255) gTAAATAAAAAAGGCGCTAGTGAAAGCGCccttttttatttacgcgttttcagcgtgcataataagaaaatcacaacaacacacatcggaggctgttatgccactgcataatttaacccgttttccacggctggagtttatcg > 8:14714‑M2/1‑29 (MQ=255) gTAAATAAAAAAGGCGCTAGTGAAAGCGCccttttttatttacgcgttttcagcgtgcataataagaaaatcacaacaacacacatcggaggctgttatgccactgcataatttaacccgttttccacggctggagtttatcg > 8:12564‑M2/1‑29 (MQ=255) aataaaAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGCATCATTCACTGCTTTCAGCAGGTc > 2:44289/1‑149 (MQ=255) aaaaaGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGt < 2:158495/94‑1 (MQ=255) aaaaaGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGt > 1:158495/1‑94 (MQ=255) aaaaaGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGCATCATTCACTGCTTTCAGCAGGTCCTCa > 2:32810/1‑149 (MQ=255) aaaaaGGCGCTAGGGAAAGCGCCCGTTTTTGTCATAATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGCATCAGTCACTGCTTTCAGCTGGTCCTCa < 4:97244/149‑1 (MQ=255) aaGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGCATCATTCACTGCTTTc < 2:67668/134‑1 (MQ=255) aaGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGCATCATTCACTGCTTTc > 1:67668/1‑134 (MQ=255) ggCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGCATCATTCACTGCTTTCAGCAGGTCCTCATTTcc < 1:32810/149‑1 (MQ=255) gcTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCTCAATTGCATCATTCACTGCTTTCAGCAGGTCCTCATTTCCtt > 8:78551/1‑148 (MQ=255) gggaaAGCGCccttttttatttacgcgttttcagcgtgcataataagaaaatcacaacaacacacctcggaggctgttatgccactgcataatttaacccgttttccacggctggagtttatcggcgcgccaacgccgctcgaatatct > 7:122212‑M2/3‑10 (MQ=255) tGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGCATCATTCACTGCTTTCAGCAGGTCCTCATTTCCTTTACg > 4:61158/1‑147 (MQ=255) gcgcCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGCATCATTCACTGCTTTcagc > 8:117499/1‑122 (MQ=255) gcgcCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGCATCATTCACTGCTTTcagc < 7:117499/122‑1 (MQ=255) | GATAAACTCCAGCCGTGGAAAACGGGTTAAATTATGCAGTGGCATAACAGCCTCCGATGTGTGTTGTTGTGATTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGCATCATTCACTGCTTTCAGCAGGTCCTCATTTCCTTTACGC > NC_000913/1999436‑1999702 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |