New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3045123NA (NA)3 (0.040) 3/242 NT NA noncoding (11/28 nt) REP211 (repetitive extragenic palindromic) element; contains 1 REP sequences REP211 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 3045129 NA (NA)noncoding (17/28 nt) REP211 (repetitive extragenic palindromic) element; contains 1 REP sequences REP211 (repetitive extragenic palindromic) element; contains 1 REP sequences

GGGCAGTACAGCAAACGCTACGGCTTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3044967‑3045123
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accggatgcaaCAAGTATTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTGGCAATCACCTCTTTGTACCAGTTAAAGCTCTTCTTACGTGAACGCGACATATCGCCAGTACCGTCGTCATGTTTATTCACATAGATAAAGCCGTAGCG  <  NC_000913/3045129‑3044982
                                                                                                                                                                                                                                                                                                                 
GGGCAGTACAGCAAACGCTACGGCTTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACC                                                                                                                                                              <  8:292008/149‑1
   CAGTACAGCAAACGCTACGGCTTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGA                                                                                                                                                           <  8:339774/149‑1
     GTACAGCAAACGCTACGGCTTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATG                                                                                                                                                         <  5:268033/149‑1
     GTACAGCAAACGCTACGGCGTTATCTATGTGAATACACATGACGACGGTACTGGCGATATGGCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATG                                                                                                                                                         <  5:341042/149‑1
      TACAGCAAACGCTACGGCTTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATGC                                                                                                                                                        <  3:15733/149‑1
       ACAGCAAACGCTACGGCTTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATGC                                                                                                                                                        >  2:65918/1‑148
        CAGCAAACGCTACGGCTTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATGCAA                                                                                                                                                      >  4:86796/1‑149
         AGCAAACGCTACGGCTTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATGCAA                                                                                                                                                      >  7:6544/1‑148
                     GGCTTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATGCAACAAGTATTGCATC                                                                                                                                         <  1:6802/149‑1
                              TATGTGAATAAACATGACGACGGTACTGTCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGA                                                                                                                                                           <  6:252348/122‑1
                              TATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGA                                                                                                                                                           >  5:252348/1‑122
                                                                                                         GTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATGCAACAAGTATTGCATCCGGTACTTCATCGACTTAAAGC                                                                                                                   <  1:21934/87‑1
                                                                                                         GTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATGCAACAAGTATTGCATCCGGTACTTCATCGACTTAAAGC                                                                                                                   >  2:21934/1‑87
                                                                                                                                                  ACCGGATGCAACAAGTATTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTGGCAATCACCTCTTTGTACCAGTTAAAGCTCTTCTTACGTGAACGCGACATATCGCCAGTACCGTCGTCATGTTTATTCACATAGATAA            <  6:120738/149‑1
                                                                                                                                                  ACCGGATGCAACAAGTATTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTGGCAATCACCTCTTTGTACCAGTTAAAGCTCTTCTTACGTGAACGCGACATATCGCCAGTACCGTCGTCATGTTTATTCACATAGAT              <  5:381480/147‑1
                                                                                                                                                  ACCGGATGCAACAAGTATTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTGGCAATCACCTCTTTGT                                                                                    <  5:36844/77‑1
                                                                                                                                                  ACCGGATGCAACAAGTATTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTGGCAATCACCTCTTTGT                                                                                    >  6:36844/1‑77
                                                                                                                                                   CCGGATGCAACAAGTATTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTGGCAATCACCTCTTTGTACCAGTTAAAGCTCTTCTTACGTGAACGCGACATATCGCCAGTACCGTCGTCATGTTTATTCACATAGATAAA           <  8:139209/149‑1
                                                                                                                                                   CCGGATGCAACAAGTATTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTGGCAATCACCTCTTTGTACCAGTTAAAGCTCTTCTTACGTGAACGCGACATATCGCCAGTACCGTCGTCATGTTTATTCACATAGATA             >  5:46366/1‑147
                                                                                                                                                    CGGATGCAACAAGTATTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTGGCAATCACCTCTTTGTACCAGTTAAAGCTCTTCTTACGTGAACGCGACATATCGCCAGTACCGTCGTCATGTTTATTCACATAGATAAAG          >  7:13453/1‑149
                                                                                                                                                           AACAAGTATTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTGGCAATCACCTCTTTGTACCAGTTAAAGCTCTTCTTACGTGAACGCGACATATCGCCAGTACCGTCGTCATGTTTATTCACATAGATAAAGCCGTAGC   >  8:6544/1‑149
                                                                                                                                                           AACAAGTATTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTGGCAATCACCTCTTTGTACCAGTTAAAGCTCTTCTTACGTGAACGCGACATATCGCCAGTACCGTCGTCATGTTTATTCACATAGATAAAGCCGTAGC   >  6:226758/1‑149
                                                                                                                                                           AACAAGTATTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTGGCAATCACCTCTTTGTACCAGTTAAAGCTCTTCTTACGTGAACGCGACATATCGCCAGTACCGTCGTCATGTTTATTCACATAGATAAAGCCGTAGC   >  4:145062/1‑149
                                                                                                                                                           AACAAGTATTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTGGCAATCACCTCTTTGTACCAGTTAAAGCTCTTCTTACGTGAACGCGACATATCGCCAGTACCGTCGTCATGTTTATTCACATAGATAAAGCCGTAGC   >  1:33669/1‑149
                                                                                                                                                           AACAAGTATTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTG                                                                                                    <  6:14552/52‑1
                                                                                                                                                           AACAAGTATTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTG                                                                                                    >  5:14552/1‑52
                                                                                                                                                            ACAAGTATTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTGGCAATCACCTCTTTGTACCAGTTAAAGCTCTTCTTACGTGAACGCGACATATCGCCAGTACCGTCGTCATGTTTATTCACATAGATAAAGCCGTAGCG  >  1:65918/1‑149
                                                                                                                                                                                                                                                                                                                 
GGGCAGTACAGCAAACGCTACGGCTTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3044967‑3045123
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accggatgcaaCAAGTATTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTGGCAATCACCTCTTTGTACCAGTTAAAGCTCTTCTTACGTGAACGCGACATATCGCCAGTACCGTCGTCATGTTTATTCACATAGATAAAGCCGTAGCG  <  NC_000913/3045129‑3044982

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.