| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4488412 = | 99 (1.140) | 3 (0.040) | 3/240 | NT | 3.1% | intergenic (+12/+149) | lptG/yjgR | lipopolysaccharide export ABC permease/DUF853 family protein with NTPase fold |
| ? | NC_000913 | 4488440 = | 98 (1.240) | intergenic (+40/+121) | lptG/yjgR | lipopolysaccharide export ABC permease/DUF853 family protein with NTPase fold | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GAAGGTAAGTCAGGCGAGATTTGTCTTTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCCACCCCACTGCAATATATTGAATTTTAATTATTTTTCAGGAATGAACGAAGCACACTTTGCTAACAATAATAAAGGGAGCTTTCGCTCCCTTTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4488568‑4488412‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctccctttattATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTCCCCCCCAGCAAA > NC_000913/4488440‑4488585 GAAGGTAAGTCAGGCGAGATTTGTCTTTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCCACCCCACTGCAATATATTGAATTTTAATTATTTTTCAGGAATGAACGAAGCACACTTTGCTAACAATAATAAAGGGAGCTTTCGCTC > 5:369621/1‑149 AAGGTAAGTCAGGCGAGATTTGTCTTTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCCACCCCACTGCAATATATTGAATTTTAATTATTTTTCAGGAATGAACGAAGCACACTTTGCTAACAATAATAAAGGGAGCTTTCGCTCC > 8:229780/1‑149 GGTAAGTCAGGCGAGATTTGTCTTTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCCACCCCACTGCAATATATTGAATTTTAATTATTTTTCAGGAATGAACGAAGCACACTTTGCTAACAATAATAAAGGGAGCTTTCGCTCCCT > 4:345899/1‑149 GGTAAGTCAGGCGAGATTTGTCTTTGCATGATGCGACGCTGGCGCGTCTTATCATGCCCACCCCACTGCAATATATTGAATTTTAATTATTTTTCAGGAATGAACGAAGCACACTTTGCTAACAATAATAAAGGGAGCTTTCGCTCCCT < 1:179782/149‑1 GTAAGTCAGGCGAGATTTGTCTTTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCCACCCCACTGCAATATATTGAATTTTAATTATTTTTCAGGAATGAACGAAGCACACTTTGCTAACAATAATAAAGGGAGCTTTCGCTCCCTT > 1:218185/1‑149 GTAAGTCAGGCGAGATTTGTCTTTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCCACCCCACTGCAATATATTGAATTTTAATTATTTTTCAGGAATGAACGAAGCACACTTTGCTAACAATAATAAAGGGAGCTTTCGCTCCCTT < 3:118619/149‑1 GTAAGTCAGGCGAGATTTGTCTTTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCCACCCCACTGCAATATATTGAATTTTAATTATTTTTCAGGAATGAACGAAGCACACTTTGCTAACAATAATAAAGGGAGCTTTCGCTCCCTT < 4:18907/149‑1 AGTCAGGCGAGATTTGTCTTTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCCACCCCACTGCAATATTTTGAATTTTAATTATTTTTCAGGAATGAACGAAGCACACTTTGCTAACAATAATAAAGGGAGCTTTCGCTCCCTTTA < 2:226100/148‑1 AGTCAGGCGAGATTTGTCTTTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCCACCCCACTGCAATATATTGAATTTTAATTATTTTTCAGGAATGAACGAAGCACACTTTGCTAACAATATTAAAGGGAGCTTTCGCTCCCTTTA < 7:1906/148‑1 CCCACTGCAATATATTGAATTTTAATTATTTTTCAGGAATGAACGAAGCACACTTTGCTAACAATAATAAAGGGAGCTTTCGCTCC < 8:379721/86‑1 CCCACTGCAATATATTGAATTTTAATTATTTTTCAGGAATGAACGAAGCACACTTTGCTAACAATAATAAAGGGAGCTTTCGCTCC > 7:379721/1‑86 ATTTTTCAGGAATGAACGAAGCACACTTTGCTAACAATAATAAAGGGAGCTTTCGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATAAG > 2:64735/1‑145 ATTTTTCAGGAATGAACGAAGCACACTTTGCTAACAATAATAAAGGGAGCTTTCGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATAAG < 1:64735/145‑1 AGGGAGCTTTCGCTCCCTTTATTATTGCTAGCAAAGTGTGCTTCGTTCATTACTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGAATGATAAGAAGCGCAAGCGACTCATCAGGCAAAGACAAATCTCGCCTGACTTACa > 1:258878/1‑148 CCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTCCCCCCac > 1:123263/1‑147 CCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTCCCCCC > 4:19347/1‑147 CCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTCCCCCC < 6:152857/147‑1 TTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTCCTTCTCCCCCCCAG > 5:215375/1‑148 TATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGGTGGCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTCCCCCCCAGCA < 5:315896/148‑1 TTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTCCCCCCCAGCAAA < 2:320990/148‑1 TTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTA < 5:274981/126‑1 TTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCATGACTTA > 6:274981/1‑126 TTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCG > 5:27412/1‑117 TTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCG < 6:27412/117‑1 GAAGGTAAGTCAGGCGAGATTTGTCTTTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCCACCCCACTGCAATATATTGAATTTTAATTATTTTTCAGGAATGAACGAAGCACACTTTGCTAACAATAATAAAGGGAGCTTTCGCTCCCTTTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4488568‑4488412‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctccctttattATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATAAGACGCGCCAGCGTCGCATCAGGCAAAGACAAATCTCGCCTGACTTACCTTCTTCTCCCCCCCAGCAAA > NC_000913/4488440‑4488585 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |