| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2769865 | 81 (0.920) | 4 (0.050) | 4/276 | 5.3 | 4.8% | coding (163/702 nt) | yfjR | CP4‑57 prophage; putative DNA‑binding transcriptional regulator |
| ? | NC_000913 | = 2769886 | 80 (0.940) | coding (184/702 nt) | yfjR | CP4‑57 prophage; putative DNA‑binding transcriptional regulator | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2769742‑2769865‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtatcCGGACTGATACTCCAGGTCCAGATACATCAGTCGTTCACGAAAATCACGCCGCAGCGTGCGCACTGACACGCCAAACTCAGCCGCCAGTTTGCGCACGCTCAACGTTTCACCCGCAACCAGACGGCTGATTATCAGTGACAGCCTGA < NC_000913/2769886‑2769740 AGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCCGGACTGATACT‑CAGGTCCAGATA < 1:59374/148‑1 TCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCGGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCCGGACTGATACTCCAGGTCCAGATACATCAG < 4:34027/149‑1 GGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCCGGACTGATACTCCAGGTCCAGATACATCAGTCGTTCACGAAAATCAC < 1:306404/140‑1 GGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCCGGACTGATACTCCAGGTCCAGATACATCAGTCGTTCACGAAAATCAC > 2:306404/1‑140 GCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATC < 7:82295/72‑1 GCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATC > 8:82295/1‑72 TATCCGGACTGATACTCCAGGTCCAGATACATCAGTCGTTCACGAAAATCACGCCGCAGCGTGCGCACTGACACGCCAAACTCAGCCGCCAGTTTGCGCACGCTCAACGTTTCACCCGCAACCAGACGGCTGATTATCAGTGACAGCCT < 2:286913/149‑1 TATCCGGACTGATACTCCAGGTCCAGATACATCAGTCGTTCACGAAAATCACGCCGCAGCGTGCGCACTGACACGCCAAACTCAGCCGCCAGTTTGCGCACGCTCAACGTTTCACCCGCAACCAGACGGCTGATTATCAGTGACAGCCT < 4:50712/149‑1 TCCGGACTGATACTCCAGGTCCAGATACATCAGTCGTTCACGAAAATCACGCCGCAGCGTGCGCACTGACACGCCAAACTCAGCCGCCAGTTTGCGCACGCTCAACGTTTCACCCGCAACCAGACGGCTGATTATCAGTGACAGCCTGA < 1:367693/149‑1 AGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2769742‑2769865‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtatcCGGACTGATACTCCAGGTCCAGATACATCAGTCGTTCACGAAAATCACGCCGCAGCGTGCGCACTGACACGCCAAACTCAGCCGCCAGTTTGCGCACGCTCAACGTTTCACCCGCAACCAGACGGCTGATTATCAGTGACAGCCTGA < NC_000913/2769886‑2769740 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |