| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2729443 = | 7 (0.210) | 4 (0.130) | 4/224 | 3.6 | 28.1% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913 | 2729485 = | 14 (0.460) | intergenic (‑41/+131) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
TGCTCACACAGATTGTCTGATGAAAAGTGAATAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAAT‑GAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2729592‑2729443‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attttcgtgtAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATC > NC_000913/2729485‑2729582 TGCTCACACAGATTGTCTGATGAAAAGTGAATAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAAT‑GAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTG > 6:28775/1‑149 TCTGATGAAAAGTGAATAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAAT‑GAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAAT < 2:21828/127‑1 ctccCAACGCGTAAACGCCTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAAT‑GAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTC > 5:94819/5‑116 ctccCAACGCGTAAACGCCTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAAT‑GAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTC < 6:94819/112‑1 GCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAAT‑GAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTC < 3:32577/113‑1 GCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAAT‑GAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTC > 4:32577/1‑113 tcATTAATAGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGT > 1:18221/3‑62 tcATTAATAGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGT < 2:18221/60‑1 ATTAAT‑GAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTC > 1:187535/1‑57 ATTAAT‑GAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTC < 2:187535/57‑1 CCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATC > 5:143907/1‑143 CCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATC < 6:143907/143‑1 CACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTAGGGTGAGCTTTCA > 5:34030/1‑55 CACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTAGGGTGAGCTTTCA < 6:34030/55‑1 TGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCT < 5:14174/79‑1 TGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCT > 6:14174/1‑79 TGCTCACACAGATTGTCTGATGAAAAGTGAATAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAAT‑GAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2729592‑2729443‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attttcgtgtAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATC > NC_000913/2729485‑2729582 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |