Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
MC JC	NC_000913	3,815,859	Δ82 bp	100%		[rph]–[rph]	[rph], [rph]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3815859	3815940	82	84 [0]	[0] 84	[rph]–[rph]	[rph],[rph]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3815858	0 (0.000)	83 (1.530)	50/398	NT	100%	pseudogene (24/48 nt)	rph	ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
	?	NC_000913	3815941 =	0 (0.000)					pseudogene (609/669 nt)	rph	ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

CTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAGGCACCCGTAATCGA  >  NC_000913/3815721‑3816165                                                                                                                                                                                                                             |                                                                                                                                                                                                                                 gcccggtattaaaccgcccggcgttgaaaaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTg                                                                                                                                                                                                                          <  1:354525‑M2/9‑1 (MQ=255) gcccggtattaaacagcccggctttgaagaaataggggcttttgcgcccggatttcagcgtaaacccgccaaactttaacccctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCt                                                                                                                                                                                                                           <  1:742912‑M2/8‑1 (MQ=255) gcccggtattaaacagcccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTg                                                                                                                                                                                                                          <  1:522519‑M2/9‑1 (MQ=255)  gccggtattaaacagcccggcgttgaaaaaataggggcttttgcgcccggatttcagcgtaaacgcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTg                                                                                                                                                                                                                          <  1:306127‑M2/9‑1 (MQ=255)  ccctgtaataaacagcccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgctttctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTg                                                                                                                                                                                                                          <  1:116552‑M2/9‑1 (MQ=255)    cggtagtaaacagcccggggttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacccctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCa                                                                                                                                                                                                                        <  1:658093‑M2/11‑1 (MQ=255)                 cccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATgcgc                                                                                                                                                                                                          >  1:504003‑M2/205‑229 (MQ=255)                 cccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATccgc                                                                                                                                                                                                          >  1:662933‑M2/205‑229 (MQ=255)                 cccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCCTCCCCTGCACTTAAATGATacg                                                                                                                                                                                                           >  2:552641‑M2/205‑228 (MQ=255)                 cccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaagccgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATgcg                                                                                                                                                                                                           >  1:512424‑M2/205‑228 (MQ=255)                 cccggcgtcgaagaaataggggcttttgcgcccggatttcagcgtaaaatcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcaccgccttctgcCGTCCcctgcaattccaatctggc                                                                                                                                                                                                           >  1:634761‑M2/205‑219 (MQ=255)                                ataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATTGGCCCGCCTCTCGtcatc                                                                                                                                                                                           >  1:20730‑M2/190‑229 (MQ=255)                                     ggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTAc                                                                                                                                                                                      >  1:169279‑M2/185‑229 (MQ=255)                                       cttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTACTCACTACg                                                                                                                                                                                     >  1:21649‑M2/183‑228 (MQ=255)                                           tgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactgccgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccaacgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATTCCTCCGTTCa                                                                                                                                                                                 >  1:589142‑M2/179‑228 (MQ=255)                                            gcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgcgagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATg                                                                                                                                                                               <  1:419390‑M2/52‑1 (MQ=255)                                               cccggatttcagcgtaaactcgccaagctttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcat                                                                                                                                                                                            <  1:248766‑M2/39‑1 (MQ=255)                                               cccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggccctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagccgccttaaaaatcagtttgcaaacgccgccttctgcCGTCCCCTGCCCTTCAATGATGCGCCCGGCTTCGGGCATCACCAcgttcaccgac                                                                                                                                                                            >  2:248766‑M2/175‑224 (MQ=255)                                                ccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagttttccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGCCCCTCACTACGTTCATGTCgg                                                                                                                                                                           >  2:61626‑M2/174‑229 (MQ=255)                                                  ggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGtc                                                                                                                                                                         >  1:549036‑M2/172‑229 (MQ=255)                                                           ggcaaactcgccaaactttaacccctgcttgctaagcccaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCa                                                                                                                                                                <  2:190754‑M2/67‑1 (MQ=255)                                                           cgtaaactcgccaaactttaacgcctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgcacctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCa                                                                                                                                                                <  1:206060‑M2/67‑1 (MQ=255)                                                            gttaacccgccaaactttaacccctgctttctaagcgcaaattcaaaaacctggcgctgatatggtttcaggccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCag                                                                                                                                                               <  2:400553‑M2/68‑1 (MQ=255)                                                              aaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgacttcgctcctcatcttactgttctacagacaaaaaaaaggcgacgcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCaga                                                                                                                                                              <  1:441256‑M2/69‑1 (MQ=255)                                                                      ccacctttaacaccttcttgttaagcgcaaattaaataaactggcgctgtaatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaggttgccagcgccgccttctgcCGTCCCCTGCCCTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAAc                                                                                                                                                     <  2:658620‑M2/78‑1 (MQ=255)                                                                              aacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTcc                                                                                                                                              >  1:201664‑M2/144‑228 (MQ=255)                                                                              aacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTcc                                                                                                                                              >  1:29878‑M2/144‑228 (MQ=255)                                                                                   ctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTCCGTTCATTTCGGTCTCTGCGGCAGAGGCTTCAACGTATTCCAGATc                                                                                                                                         >  2:489630‑M2/139‑228 (MQ=255)                                                                                    tgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGCCTTCAACGTATTCCAGATCg                                                                                                                                        >  1:229831‑M2/138‑228 (MQ=255)                                                                                     gcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacatacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGGGGCAGAGTCTTCAACGTATTCCAGATCGc                                                                                                                                       >  1:158844‑M2/137‑228 (MQ=255)                                                                                     gcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtca                                                                                                                                                                                             <  2:660058‑M2/38‑1 (MQ=255)                                                                                     gcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGatccc                                                                                                                                       >  1:751269‑M2/137‑226 (MQ=255)                                                                                     gcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGCCTTCGGTCATCACTACTTTCATGTCGGTCTCTGCGGCAGAGGCTTCAACGTATTCCAGATCGc                                                                                                                                       >  1:143550‑M2/137‑228 (MQ=255)                                                                                     gcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgcgcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtca                                                                                                                                                                                             >  1:660059‑M2/137‑174 (MQ=255)                                                                                               cgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGGCTTCAACGTATTCCAGATCGCAAACCCCCTCg                                                                                                                            >  2:450549‑M2/127‑229 (MQ=255)                                                                                                     ttcaaaaaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacaaacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTc                                                                                                                      <  1:325328‑M2/109‑1 (MQ=255)                                                                                                         ataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCtt                                                                                                                                                         >  1:30782‑M2/117‑190 (MQ=255)                                                                                                         ataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCtt                                                                                                                                                         <  2:30782‑M2/74‑1 (MQ=255)                                                                                                         ataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAAATCGCAAACCCCTTCGCCGTTCACaa                                                                                                                  >  2:744575‑M2/117‑229 (MQ=255)                                                                                                         ataaactggcgctgatatggtttcaagacttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcaccttaaaaatcagttggccagccccgccttctgcCGTCCCCTGCACTTCACTGATGGGCCCGTCTTCGGTCATCACTACGTTCATCTCGGTCTCTGCGGCAGAGTCTTCAACGTCTTCCAGATCGCACACCGCTTCTCCGTTCACaa                                                                                                                  >  2:220260‑M2/117‑229 (MQ=255)                                                                                                                 gcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTCCGTTCCTGTCGGTCTCTGCTGCCGAGTCTTCAACGTATTCCCGCTCCCAAACCGCTTCGCCGTTCCCAATTCCGAc                                                                                                           >  2:76736‑M2/109‑228 (MQ=255)                                                                                                                  cgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccatcgccgccttctgcCGTCCCCTGCACTTCCATGATGCGCCCGTCTTCGGCCATCACTACGTTCATGTCGGGTTCTGCGGCATAGTCTTCAACCTTTTCCATCACCCCAACCGCTTCCCCATTCACAATTCcgaaa                                                                                                          >  2:417845‑M2/108‑226 (MQ=255)                                                                                                                  cgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGCCTCTGCGGCAGAGTCTTCAACCTATTCCAGATCCCAAACCGCTTCGCCGTTCAAAATTccgaaaa                                                                                                         >  2:25450‑M2/108‑226 (MQ=255)                                                                                                                     ggttatggtttatggccttcgccccccaactacctttggtagagacaaaaaaaagtggacccatccggcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGaaa                                                                                                      <  2:270876‑M2/125‑1 (MQ=255)                                                                                                                           ggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCGGAACTTTCAACGAATTCCAGCTCGCAAACCGCTTCGCCGTCACCAATTCCGACAGAAACTGc                                                                                                  >  2:503372‑M2/99‑227 (MQ=255)                                                                                                                               tcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGTTCGCAAACCGCTTCGCCGTTCACAATTCCGCCCGCAACTGCGGCTAc                                                                                            >  1:53879‑M2/95‑229 (MQ=255)                                                                                                                                catgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTAcc                                                                                           <  1:450549‑M2/136‑1 (MQ=255)                                                                                                                                 atgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCCATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAACCCGCGGCTAcc                                                                                           >  1:640825‑M2/93‑228 (MQ=255)                                                                                                                                 atgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGTCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGCGTCTTCAACGAATTCCACATCGCAAAACGCTTCGCCGTTCACAATTCCACCAAAAACAGCGGccacca                                                                                          >  2:294750‑M2/93‑229 (MQ=255)                                                                                                                                 atgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTAcc                                                                                           >  1:26183‑M2/93‑228 (MQ=255)                                                                                                                                 atgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAAACGCTTCGCCGTTCCAaattccgacacaaaacgaggcaacc                                                                                           >  2:95365‑M2/93‑217 (MQ=255)                                                                                                                                       tcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCCCAAACCGCTTCGCCGTTCCCAATTCCGACAGAAACTGCGGCAACcaccccat                                                                                    >  2:232297‑M2/87‑227 (MQ=255)                                                                                                                                        cgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCttt                                                                                   <  1:61626‑M2/144‑1 (MQ=255)                                                                                                                                                       ttttcatcatacaaaaaaaaggcgactccgcagccgctttaaaaagcagtttcccagcgccgccttctgcCGCCCCCTGCACGTCAATGATGCGCCCGTTTTCGGTCATCACTACGTTCATGTCGGGCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCCAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGtttt                                                                    <  2:291826‑M2/159‑1 (MQ=255)                                                                                                                                                         ttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGCATTCCAGATCGCAAACCGCTTCGCCGTCCACACTTCCGCCAGAAACCGCGGCTCCCATCCCTTTCACCGGATTGGTTTTCa                                                                  >  2:43362‑M2/69‑229 (MQ=255)                                                                                                                                                          tctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCa                                                                  >  2:65791‑M2/68‑228 (MQ=255)                                                                                                                                                          tctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCGTTCATCGGATTGGTTTTCAg                                                                 >  1:223302‑M2/68‑229 (MQ=255)                                                                                                                                                            tacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGCCAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGc                                                                >  1:155439‑M2/66‑228 (MQ=255)                                                                                                                                                                 acaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCaga                                                                                                                                                              <  2:224001‑M2/69‑1 (MQ=255)                                                                                                                                                                 acaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCaga                                                                                                                                                              >  1:224001‑M2/61‑129 (MQ=255)                                                                                                                                                                 acaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCCCAATTCCGCCAGAACCTGCGGTACCCATCCCTTTCATCGAGTTGGTTTTCAGTTTccc                                                           >  2:137727‑M2/61‑228 (MQ=255)                                                                                                                                                                   aaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTTCCCATTCCGACAGAAACTGCGGCCACCATCCCTTTACTCGGATTGGTTTTCAGCTTGCCGt                                                         >  1:676312‑M2/59‑228 (MQ=255)                                                                                                                                                                     aaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCCCAATTCCGACCAAAACTCCGGCTACCCACCCTTTCATCGGATTGGGTTTCCGCTTGCCGttt                                                       >  2:567081‑M2/57‑228 (MQ=255)                                                                                                                                                                     aaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAATTGTGGCTACCATCCCTTTCATCGGATTGGTTTTCACCTAGCCGttt                                                       >  2:352072‑M2/57‑228 (MQ=255)                                                                                                                                                                     aaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGGTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGCTCGCAAACCGCTTCGCCGTTCCCAATTCCGACAGAAACTGCGGTTACCATCCCTTTCCTCGGATTGGTTTTCAGCTTGCCGttt                                                       >  2:615499‑M2/57‑228 (MQ=255)                                                                                                                                                                        aaaggcgacccatcctgcgccttaaaaatccgtttgccagcgcctccttcggcCGTCCCCTGCCCTTCAATGATGCGCCCGTCTTCGGGTATCACTACGTTCATGTCGGTCTCCGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTcca                                                   <  2:549036‑M2/176‑1 (MQ=255)                                                                                                                                                                          tgcgcactcctcagtcgtcttaaaaatcagtttgccagcgccgccttctttCCGCCCCTGCACTTCAATTATGCGCCCGTCTCCGGTCATCACTACGTTCCTGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTccacc                                                 <  2:343168‑M2/178‑1 (MQ=255)                                                                                                                                                                          gcccgactcagccggcgccttaaaaaccagtgtgcccgcgccgccctctgcCCTCCCCTGCCCTTCAATGGTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTccacc                                                 <  2:368712‑M2/178‑1 (MQ=255)                                                                                                                                                                          aggctgctcatcagtcgccttaaaaatcagtttgccagcgccgcctcctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTCCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTccacc                                                 <  2:512424‑M2/178‑1 (MQ=255)                                                                                                                                                                          aggcgacccatccgtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGCCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTccacc                                                 <  2:662932‑M2/178‑1 (MQ=255)                                                                                                                                                                          aggccactccacagcctccttaaaaaccagtttgcccgcgcccccttctgcCTTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTccacc                                                 <  2:751268‑M2/178‑1 (MQ=255)                                                                                                                                                                            gcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTccacc                                                 <  1:43362‑M2/178‑1 (MQ=255)                                                                                                                                                                            gcgactactcagtcggcttaaaaatcagtttgccagccccgccttctgcCGTCCCCTGCATTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTcca                                                   <  1:674504‑M2/176‑1 (MQ=255)                                                                                                                                                                               actcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGTCCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCCCAATTCCGACAGAAACTTCGGCTACCAACCCTTTCATCGGATTGGTTTTAACCTTGCCGTTTTCCACCACCt                                             >  2:133187‑M2/47‑228 (MQ=255)                                                                                                                                                                               actcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTAAGCTTGCCGTTTTCCCCCAGCtt                                            >  1:403626‑M2/47‑229 (MQ=255)                                                                                                                                                                                    tccgtcgccttaaaaatcagttggccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTa                                       <  1:235096‑M2/188‑1 (MQ=255)                                                                                                                                                                                    tcaatccccttaaaaatcggtttgccagcgccgccttcggcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTa                                       <  1:610417‑M2/188‑1 (MQ=255)                                                                                                                                                                                          gccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTccacc                                                 >  1:368712‑M2/36‑213 (MQ=255)                                                                                                                                                                                          gccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCCTTACTCGGATTGGTTTTCAGCTTGCCGTTTTCCACCCGCTTCTGtagccc                                   >  2:610416‑M2/36‑225 (MQ=255)                                                                                                                                                                                               aaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCCACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGCCAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGCTTTCGACTTGCAGTTTTCAACAACCTTCTGTTGCGCATCCAcc                            >  2:282968‑M2/31‑229 (MQ=255)                                                                                                                                                                                                        tttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACg                   >  1:256307‑M2/22‑229 (MQ=255)                                                                                                                                                                                                        tttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGGTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGCCTGAAACTGCGCCTCCCATCCATTTCATCGGCTTGGTTTTCAGTTTGCCGTTTTCCACCAGCTTCGTTAGCGaccctaccaccacaaac                   >  1:634859‑M2/22‑221 (MQ=255)                                                                                                                                                                                                            ccagcgcccccttctgcCTGCCCCGGCGCTTCAATAGTGGCCCCGTCTTCGGTCATCCCTACGTTCATGTCGGCCCCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTTCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAgg               <  2:106211‑M2/212‑1 (MQ=255)                                                                                                                                                                                                                         ctgcCGTCCCCTGCCCTGCAAGGGGGCCCCCTTCTTCGGCCATCACTACCTTCATGTCGGTCGCTGCGGCAGAATCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAGGCACCCGTAATCGa  <  2:676311‑M2/225‑1 (MQ=255)                                                                                                                                                                                                                             |                                                                                                                                                                                                                                 CTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAGGCACCCGTAATCGA  >  NC_000913/3815721‑3816165

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑