Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
JC JC	NC_000913	1,979,486	IS5 (+) +4 bp	100%	intergenic (‑271/‑264)	insA ← / → uspC	IS1 repressor TnpA/universal stress protein

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1979486 =	0 (0.000)	30 (0.610)	20/408	NT	100%	intergenic (‑271/‑267)	insA/uspC	IS1 repressor TnpA/universal stress protein
	?	NC_000913	2101749 =	NA (NA)					noncoding (1195/1195 nt)	IS5	repeat region
*	?	NC_000913	= 1979489	0 (0.000)	58 (1.170)	42/408	NT	100%	intergenic (‑274/‑264)	insA/uspC	IS1 repressor TnpA/universal stress protein
	?	NC_000913	= 2290113	NA (NA)					noncoding (1/1195 nt)	IS5	repeat region

GCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATTAATTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGC  >  NC_000913/1979260‑1979713                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                    accaactggcgatgttattcactctggccaaccggtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc                                                                                                                                                                                                                                     >  1:24171‑M1/227‑227 (MQ=255)   caactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacggcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatctccccgcttattcgcaccttccCTaa                                                                                                                                                                                                                                  >  1:74701‑M1/225‑228 (MQ=255)     agtggcgatttttatcacgctggccaaccaggttcgggcggaccaaagggaaagacagtgggagagatctcactaaaacatggggataactccttaaatggcgaaaaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaattactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAtt                                                                                                                                                                                                                                >  2:698413‑M1/223‑228 (MQ=255)           gatgttattcacgctggccaacctggttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctggttcaaggcatttacgggggaaaaaataggctcaaacatgaagaaatgaaatgcctgggtaagccgagaagaatttacccgcttattcgccccttcccaaaactgtccc                                                                                                                                                                                                                          <  2:541585‑M1/12‑12 (MQ=255)           acaTAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtg                                                                                                                                                                                                                          <  1:472474‑M1/227‑9 (MQ=255)             tttttttcacgctggccaacctgtttcgggcggaccaaatgaaacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaa                                                                                                                                                                                                                        >  2:459737‑M1/215‑228 (MQ=255)               tttattcacggtggccaacctgtttcgggcggaacaaaggatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaag                                                                                                                                                                                                                      >  2:454470‑M1/213‑228 (MQ=255)                 atttataattTATATTTTTGTTTTGGGTGTATTTCAAACTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaaca                                                                                                                                                                                                                    <  2:312682‑M1/225‑15 (MQ=255)                 aTGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAACAAGACACTTACCGCACAACAAACTAAgaaagatgcgaaca                                                                                                                                                                                                                    >  1:305088‑M1/1‑214 (MQ=255)                 aTGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGAACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGATATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaaca                                                                                                                                                                                                                    >  1:52330‑M1/1‑214 (MQ=255)                     ccggtggccaacctgtttcgggcggaccaaatgattcctcagggggagagatctccataaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaattgccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGc                                                                                                                                                                                                                >  2:87166‑M1/207‑228 (MQ=255)                      taAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggagcgaacaagtcc                                                                                                                                                                                                               >  1:508010‑M1/1‑209 (MQ=255)                       gctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttacccgcttattagcaacttccCTAATTAAATACAAAGAAAGGcaa                                                                                                                                                                                                              <  2:658823‑M1/24‑1 (MQ=255)                       gctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaataggctcaaacatgaagaaatgaaatgactgagtaagccgagaagaatttccccccttattagaaccttccCTAATTAaatacaaaaaaaagaaa                                                                                                                                                                                                              <  2:183913‑M1/24‑6 (MQ=255)                        ctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgaatcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgccccttccCTAATTAAATACAAAGAAAGGcaa                                                                                                                                                                                                              >  2:85427‑M1/204‑227 (MQ=255)                          ggccaacctgtttcggggggaccaaaggatacggcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGcaacaa                                                                                                                                                                                                           >  2:361286‑M1/202‑228 (MQ=255)                           ggcaacctttttcggggggaccaaatgatacgtcagggggaaaaatctcactaaaaactggggataacgccttaaatggcgaagaaaccgtctaaataggctgattcaaggcagttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAAt                                                                                                                                                                                                          >  2:201746‑M1/201‑228 (MQ=255)                           ggcaacctgtttcgggcggacaaaatgattcgtaagtgggagagatctcactaaaaactggggataacgccttaaagggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacattaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAAt                                                                                                                                                                                                          >  2:237104‑M1/201‑228 (MQ=255)                           gccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAAt                                                                                                                                                                                                          >  1:41079‑M1/201‑228 (MQ=255)                           gccaaccgtgttcgggcggcccaaatgatacggcagtgggagagatctaactaaaaacgggggattacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAAt                                                                                                                                                                                                          >  1:609949‑M1/201‑228 (MQ=255)                            aTACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgata                                                                                                                                                                                                         >  1:356406‑M1/1‑203 (MQ=255)                              aCTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCCAATAAGCTATTTTTAAACAAACACTTACCGCAAAACAAACTAAggaaagcgcgaacaagtcccagatata                                                                                                                                                                                                       >  2:485164‑M1/1‑201 (MQ=255)                              aCTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGATATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatg                                                                                                                                                                                                       >  1:640644‑M1/1‑201 (MQ=255)                               cTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatat                                                                                                                                                                                                        <  1:485164‑M1/226‑27 (MQ=255)                                    ttacgggtggacaaaatgatacgtcagtgggagagatctcaataaaaactggggataacgccttaaatggcgaaaaaacggtctaaataggctgattcaaggaatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaat                                                                                                                                                                                                 >  2:183259‑M1/192‑228 (MQ=255)                                          ggTTTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttg                                                                                                                                                                                           <  1:174350‑M1/228‑40 (MQ=255)                                          ggTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttg                                                                                                                                                                                           >  1:368897‑M1/1‑189 (MQ=255)                                             gaccaaatgatacgtcagtgggagaaatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGaa                                                                                                                                                                                        >  2:273010‑M1/183‑228 (MQ=255)                                             gaccaaagtatacgtaagtgggagagatctcactaaaaactggggataacgccttaaagggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGaa                                                                                                                                                                                        >  1:529084‑M1/183‑228 (MQ=255)                                             gaacaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGaa                                                                                                                                                                                        >  1:658823‑M1/183‑228 (MQ=255)                                                  taaaactgttaAAAAGTTTTTCGGTACGGCAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgg                                                                                                                                                                                   <  2:606478‑M1/223‑48 (MQ=255)                                                       ttcgaaagggggagagatctcaataaaaactggggataacgccttaaatggagaaaaaacggtcaaaataggcagattcaaggcatttacgggaaaaaaaatcggctcaaacatgaagaaaggaaatgactgagtcagccgagaagaatttccccgcttattcgaaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTAc                                                                                                                                                                               >  2:165185‑M1/173‑227 (MQ=255)                                                        acgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaagaaag                                                                                                                                                                                                                  <  2:571060‑M1/20‑1 (MQ=255)                                                         cgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAgg                                                                                                                                                                                                                 >  1:571060‑M1/171‑191 (MQ=255)                                                          ttAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgcgatcatgtttgtcatctg                                                                                                                                                                                    >  1:606478‑M1/1‑173 (MQ=255)                                                            aaaaaTTTTTTGGGTACCCTAGCAAACAAAAAAGAAACAGGAATAATCGAAATGGGATGTTGCGAACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaa                                                                                                                                                                         <  2:658130‑M1/228‑58 (MQ=255)                                                                attttttcgTAACGCTAGCAAGAAAAAAGGAAAAGGGAATAATCGAAAGGGAATGTGGCGCACAG‑CAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg                                                                                                                                                                    <  1:291957‑M1/226‑63 (MQ=255)                                                                  tttttCGCTACGCTAGCAAGCAAAAAAGAAACAGGAATAAACAAAATGGGATTGTGCTCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggt                                                                                                                                                                   <  2:52330‑M1/228‑64 (MQ=255)                                                                                   actggggataacgccttaaaaggcggagaaacggtctgaaaaagctgattcaaggcatttacgggacaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGgag                                                                                                                                                   >  1:29204‑M1/145‑227 (MQ=255)                                                                                     tggggataacgccttaaatggacaaaaaacggtctaaatagtgagaattaaggcaattacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgaatcaaccaagaagaatttccccgtttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAAt                                                                                                                                                >  2:320343‑M1/143‑228 (MQ=255)                                                                                     tggggataacgcattaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagtatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAAt                                                                                                                                                >  1:183913‑M1/143‑228 (MQ=255)                                                                                      ggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAAATTAATGTTAATGa                                                                                                                                                                                         <  2:534728‑M1/45‑1 (MQ=255)                                                                                       gggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGaa                                                                                                                                                                                        >  1:534728‑M1/141‑186 (MQ=255)                                                                                                          tCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttttcatctggagccatagaacagggttcatcatgagtcatcaacttaccttggccgcaagagaatt                                                                                                                           >  2:130604‑M1/1‑125 (MQ=255)                                                                                                          tCGAAATGGGATCTTGCGCACAGTCAAAATAACCCACCGTAAATAATCAACTGCTATAAATAATCACTTTCATTCAATACCAGATAAGCTATTTTTAAACAGACCCTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaatt                                                                                                                           <  1:199324‑M1/228‑104 (MQ=255)                                                                                                          cgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc                                                                                                                                                                                                                                     >  2:91624‑M1/122‑122 (MQ=255)                                                                                                                          cgcACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctg                                                                                                                                                                                    >  1:187911‑M1/1‑109 (MQ=255)                                                                                                                           gcACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgg                                                                                                                                                                                   <  2:187911‑M1/155‑48 (MQ=255)                                                                                                                                   ttcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTCCATTTGAAATTATATGATCAcc                                                                                                  <  1:103330‑M1/132‑1 (MQ=255)                                                                                                                                         aCTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcattgttgtcatctggagccataaaacagggttcatcatgagtaataaaattaccttccccgacagggaattcagcagtaaacgccgccaacccaaaaaaac                                                                                             >  2:611703‑M1/1‑94 (MQ=255)                                                                                                                                           tCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagaga                                                                                           >  1:117108‑M1/1‑92 (MQ=255)                                                                                                                                             aCCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgcgatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagagccatcaaacaagaaaaaagattt                                                                                        >  2:310726‑M1/1‑90 (MQ=255)                                                                                                                                             aCCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagaga                                                                                           <  1:130604‑M1/225‑136 (MQ=255)                                                                                                                                                   aataatCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACAGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcattatgagtcataatcttaccttcaccgacatgaaattcagcagtaagccccggcagaccagaaaaaggattttcttgt                                                                                  >  2:448578‑M1/1‑84 (MQ=255)                                                                                                                                                             tGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaa                                                                                                                                                                                                                   >  2:204965‑M1/1‑74 (MQ=255)                                                                                                                                                              gCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaag                                                                                                                                                                                                                  <  1:204965‑M1/89‑17 (MQ=255)                                                                                                                                                                    aacatgaagaaatgaaatgactgagtcagccgagaagaatttcccctcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATTAATTATCTTTACTaataat                                                                 >  1:206463‑M1/64‑228 (MQ=255)                                                                                                                                                                         tCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctagagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagagaattcaccagaaagcgccgtcagacccgaaaagagattttcttgtcccgcatggagcagattttgcc                                                            >  2:199799‑M1/1‑62 (MQ=255)                                                                                                                                                                         tCACTTTCATACAATACCAGATAAGATATTTTTAAACAGACCCTTACCGCACAACAAACTAAggaaggtgcgaacaaggccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgcc                                                            <  2:368897‑M1/228‑167 (MQ=255)                                                                                                                                                                              ttCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagagaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagatgttgccatggc                                                       >  1:45933‑M1/1‑57 (MQ=255)                                                                                                                                                                              aatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGATTTACATATATTAACCACTTGTTTAATGCGGAGaa                                                                                                                                                 <  2:159839‑M1/85‑1 (MQ=255)                                                                                                                                                                               tCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggca                                                      >  1:116512‑M1/1‑56 (MQ=255)                                                                                                                                                                               atgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAAt                                                                                                                                                >  1:159839‑M1/53‑138 (MQ=255)                                                                                                                                                                                cATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaa                                                     >  2:24490‑M1/1‑55 (MQ=255)                                                                                                                                                                                       tACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatgg                                              >  1:16386‑M1/1‑48 (MQ=255)                                                                                                                                                                                       tACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttctggtcccgcatggagcagattctgccatggcaaaacatgg                                              >  1:217736‑M1/1‑48 (MQ=255)                                                                                                                                                                                       tACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagag                                                                                            >  2:648995‑M1/1‑48 (MQ=255)                                                                                                                                                                                            gtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAAt                                                                                                                          <  1:267364‑M1/108‑1 (MQ=255)                                                                                                                                                                                            gATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagtagtaagcgccgtcagaccagaaacgagattttcttgtcccgcttggagccgattctgccatggcaaaacatgtgggaa                                         >  1:96390‑M1/1‑43 (MQ=255)                                                                                                                                                                                            gATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagt                                                                                                                                                        >  1:363419‑M1/1‑43 (MQ=255)                                                                                                                                                                                             tcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAAtt                                                                                                                         >  2:267364‑M1/39‑147 (MQ=255)                                                                                                                                                                                             agaagcTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcaagtttgtcatctggagccatagaacagggttcatcatgagtc                                                                                                                                                       <  2:363419‑M1/115‑76 (MQ=255)                                                                                                                                                                                             aTAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaag                                        >  1:73171‑M1/1‑42 (MQ=255)                                                                                                                                                                                             aTAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgaatggagcagattctgccatggcaaaaaatgtgggaag                                        >  1:703226‑M1/1‑42 (MQ=255)                                                                                                                                                                                                 gCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgcattaagcagtaaacgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgcactggcaaaacatgagggaagtcat                                    >  2:598514‑M1/1‑38 (MQ=255)                                                                                                                                                                                                 gCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgacatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgc                                                             >  1:95764‑M1/1‑38 (MQ=255)                                                                                                                                                                                                  cTATTTTTAAACCAACACTTACCGCACAACAATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgcc                                                            <  1:369864‑M1/203‑167 (MQ=255)                                                                                                                                                                                                     tttttAAACAGACACTTACCGACAAAAAAACTAAggaaggttgcaacaagtcccttatatgagttcatgtttgatatctggacccatagaacagggttcatcatgagtcatgaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattcggccatggcaaaacatggtggaagtcttcgag                                <  2:640644‑M1/228‑195 (MQ=255)                                                                                                                                                                                                       tttAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggtgcagattctgccatggcaaaacatggttgaagtcatcgagcc                              >  1:569733‑M1/1‑32 (MQ=255)                                                                                                                                                                                                       tttAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagggaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatgtagcagattctgccatggcaaaacatggtggaagtcatcgagcc                              >  1:221854‑M1/1‑32 (MQ=255)                                                                                                                                                                                                               gACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattatgccatgggaacacatggtggaagtcatcgagccgttttacc                      >  2:3417‑M1/1‑24 (MQ=255)                                                                                                                                                                                                                acacTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccc                     >  1:564109‑M1/1‑23 (MQ=255)                                                                                                                                                                                                                acacTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaa                                                    >  2:239819‑M1/1‑23 (MQ=255)                                                                                                                                                                                                                acacTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattcggccatggcaaaccatgttggaagtcatagagccgtgttaccc                     >  1:271006‑M1/1‑23 (MQ=255)                                                                                                                                                                                                                 ctcttACCGCACACAAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaccagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttacccc                    <  1:3417‑M1/226‑207 (MQ=255)                                                                                                                                                                                                                 cacTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaa                                                   <  1:239819‑M1/197‑176 (MQ=255)                                                                                                                                                                                                                          cacaACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagcgattttcttgtcccgcatggagccgattctgccctggcaaaacatgttggaagtcacctagcggttttaccccaaggcggg            >  2:239102‑M1/1‑13 (MQ=255)                                                                                                                                                                                                                          cacaACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctgg            >  1:179492‑M1/1‑13 (MQ=255)                                                                                                                                                                                                                          cacaACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgccagcccagaaaagaagttttcttgtcccgcatggagcagattctgccatggcaaaacatgggggaagtcatcgagccggtttaccccaagacggga           >  2:360339‑M1/1‑13 (MQ=255)                                                                                                                                                                                                                          cacaACAAACTAAggaaggtgcgaacaagtcactgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaatgcatcgagccgttttaccccaagcctgg            >  1:214138‑M1/1‑13 (MQ=255)                                                                                                                                                                                                                            caacaaACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaccatggtggaaggcatcgagccgttttaccctaaggctggta          >  1:48791‑M1/1‑11 (MQ=255)                                                                                                                                                                                                                            caacaaACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggggtcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctggga          >  1:454358‑M1/1‑11 (MQ=255)                                                                                                                                                                                                                                   cTAAggaaggtgcaaaaaagtccctgaatggagatcatttttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctggtaatggccgg  <  2:520525‑M1/228‑225 (MQ=255)                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                    GCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATTAATTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGC  >  NC_000913/1979260‑1979713

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.