Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
MC JC	NC_000913	3,815,859	Δ82 bp	100%		[rph]–[rph]	[rph], [rph]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3815859	3815940	82	68 [0]	[1] 69	[rph]–[rph]	[rph],[rph]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3815858	0 (0.000)	65 (1.380)	46/388	NT	100%	pseudogene (24/48 nt)	rph	ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
	?	NC_000913	3815941 =	0 (0.000)					pseudogene (609/669 nt)	rph	ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

AGATCGCGCCCGGTATTAAACAGCCCGGCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTT  >  NC_000913/3815632‑3816083                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                  aGATCGCGCCTGGTATGAAACAGGCCGGCGTTGAAGAAATAGGGGGTTTTGCGCCCGGATTACAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGCCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCc                                                                                                                                                                                                                                  <  1:331870‑M1/228‑2 (MQ=255) aGATCGCGCCCGGTATTAAACAGCCCGGCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCc                                                                                                                                                                                                                                  <  1:262278‑M1/228‑2 (MQ=255)       cgcCCGGTATTAAACAGCCCGGCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACCCCTGCTTGCTAAGCGCAACTTCAATAAACTGGCGCTGATATAGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTCCAGACAAAAAAACGGCGCCTCCTCAGTCCCCTTACAAATCAGTTTTCCAGAGCGCCCTTCTGCcgccccc                                                                                                                                                                                                                            >  2:503312‑M1/1‑221 (MQ=255)       cgcCCGGTATTAAACAGCCCGGCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCCTCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCCCCGCCTTCTGCcgtcccc                                                                                                                                                                                                                            >  1:534440‑M1/1‑221 (MQ=255)       cgcCCGGTATTAAACAGCCCGGCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATAAGTCGCCTTAAAAATCAGATTGCCAGCGCCGCCTTCTGCcgtcccc                                                                                                                                                                                                                            >  1:288109‑M1/1‑221 (MQ=255)         cccGGTTATAAACAACCCGGCGTTGAAAAAATAGGGGCCTTTGCGCCCGGATGTCAGCTTAAACTCGCCAAACTTTAACACCTTCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACGTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctg                                                                                                                                                                                                                          <  2:616977‑M1/228‑10 (MQ=255)         cccGGTATTAAACAGCCCGGCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccatg                                                                                                                                                                                                                          <  1:327965‑M1/228‑10 (MQ=255)          ccGGTAGTAAACAGCCCGGCGTTGAAGAAAGAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctg                                                                                                                                                                                                                          <  1:533500‑M1/227‑10 (MQ=255)          ccGGGATTAAACAGCCCGGCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACTCCTGCTTGCTAAGCGCAAATTCAATAAACGGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctg                                                                                                                                                                                                                          <  1:503312‑M1/227‑10 (MQ=255)             gTATTAAACAGCCCGGCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCACCGCCGCCTTCTGCcgtcccctgcac                                                                                                                                                                                                                       >  1:440302‑M1/1‑215 (MQ=255)                      aGCCCGGCGTTGAAGAAATAGGGTCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTTCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatg                                                                                                                                                                                                             <  1:247588‑M1/228‑23 (MQ=255)                        cccGGCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTTATCTTACTTTTCTAACGACAAAAAAAAGGCGATTCATCAGTCGCCTTAAAAATCAGTTTGCAAGCGCAGCCTTCTGCggtcccctgcacttcaatgatgcg                                                                                                                                                                                                           >  1:694031‑M1/1‑204 (MQ=255)                        cccGGCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGTCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgc                                                                                                                                                                                                            >  2:20788‑M1/1‑204 (MQ=255)                        cccGGCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTCAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgc                                                                                                                                                                                                            >  1:606634‑M1/1‑204 (MQ=255)                        cccGGCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgc                                                                                                                                                                                                            >  1:91224‑M1/1‑204 (MQ=255)                        cccGGCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtccc                                                                                                                                                                                                                             >  2:562748‑M1/1‑204 (MQ=255)                         ccGGCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccc                                                                                                                                                                                                                            <  1:562748‑M1/210‑8 (MQ=255)                                  aacaaatggGGGCTTTTGCCCCCGGATTTCAGCGTAAACCCGCCAAACTTTAACCCCTTCTTTCTAAGCCCAAATTCAATAAACTGGGACTGATATGGGTTCATGCCTTCGCTCCTTATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcg                                                                                                                                                                                                 <  2:694031‑M1/225‑35 (MQ=255)                                    gaaATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggt                                                                                                                                                                                               <  1:7044‑M1/228‑37 (MQ=255)                                      aaTAGGGGCTTTTGCGCCCGGATTTCAGGGGAAACTCGCCAAACTGTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtca                                                                                                                                                                                             <  1:337887‑M1/228‑39 (MQ=255)                                      aaTAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtca                                                                                                                                                                                             <  1:20788‑M1/228‑39 (MQ=255)                                       aTAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGTCGACTCATCAGTCGCCTTAAAAATCCGTTTGCCAGAGCCGCCTTCTGCcgtcccctgcacttcaataatgcacccgtcttcggtcat                                                                                                                                                                                            >  2:531228‑M1/1‑189 (MQ=255)                                       aTAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcat                                                                                                                                                                                            >  1:599561‑M1/1‑189 (MQ=255)                                          ggggCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatca                                                                                                                                                                                          >  1:527080‑M1/1‑186 (MQ=255)                                           gggCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACTCCTGCTTGCTAAGCGCAAATTCAATAAACTGGCCCTGATATGGTTTCATGCCTTCGCTTCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACGCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcact                                                                                                                                                                                        <  1:167274‑M1/228‑44 (MQ=255)                                           gggCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACCCCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcact                                                                                                                                                                                        <  1:418877‑M1/228‑44 (MQ=255)                                              gtttttCCCCCGGTTTTTAAAGTAAACTCCCCAAACTTTTACTCCTGCTTGCTAAGCGCAAAATCAATAAACTGGCGCTGATATGGTTTCAAGCCTTCGCTCCTCATCTTACCTTTCTACAACCAAAAAAAAGGCGGCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacg                                                                                                                                                                                     <  2:393250‑M1/227‑47 (MQ=255)                                                         cgaTTTCAACTGAAACTCCCCAAACTTTAACCCCTGCTTACTAAGCCGAAAGTCAATAAACTGGCGCTGATATGGTTTCTGGCCTCCGCTCCTCATCTTACTTTTCTCCAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggt                                                                                                                                                                          <  2:436542‑M1/227‑58 (MQ=255)                                                                    tAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcag                                                                                                                                                               <  2:252129‑M1/228‑69 (MQ=255)                                                                          cGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCACGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtctt                                                                                                                                                         <  1:510466‑M1/228‑75 (MQ=255)                                                                              aaaCTTTACCTCCTGCTTGCTAAGCGCAAATTCAATAACCTGGCGCTGATATGGTTTCAGTCCTTCGCCCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaac                                                                                                                                                     <  2:599561‑M1/228‑79 (MQ=255)                                                                              aaaCTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaac                                                                                                                                                     <  1:262157‑M1/228‑79 (MQ=255)                                                                                aCTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgccggtctctgcggcagagccttcaacg                                                                                                                                                    >  1:70831‑M1/1‑148 (MQ=255)                                                                                     aaCACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtc                                                                                                                                                                                              >  2:147511‑M1/1‑143 (MQ=255)                                                                                     aaCACCTGCTTGCTAAGCCCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattcc                                                                                                                                              <  1:275995‑M1/228‑86 (MQ=255)                                                                                      acccctgcTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtca                                                                                                                                                                                             <  1:147511‑M1/177‑39 (MQ=255)                                                                                            gcttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCTACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaataatgcgcccgtcttcggacatcaccacgttcattgcggtcccttaggccgagtcttcaacgtattccagaacg                                                                                                                                        >  2:671698‑M1/1‑136 (MQ=255)                                                                                            gcttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAACAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgc                                                                                                                                                                                                            >  2:381703‑M1/1‑136 (MQ=255)                                                                                             cttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcg                                                                                                                                                                                                           <  1:381703‑M1/159‑25 (MQ=255)                                                                                                      cgcAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGCCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCACCTTCTGCagtcccctgcacttcaatgatgcgcccgtcttcgatcatcactacgttcctgtcggtctatgcggcagagtcttcaacgcattccagatcacaaaccgctt                                                                                                                              >  1:170975‑M1/1‑126 (MQ=255)                                                                                                       gcAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggc                                                                                                                                                                 >  1:207451‑M1/1‑125 (MQ=255)                                                                                                                        gcgcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtattctgtcatcactccgttcatgtcggtctctgcggccgagtcttcaccgtattccagctcgcaaaccccttcgccgttcacaattccgc                                                                                                            >  1:312805‑M1/1‑108 (MQ=255)                                                                                                                         cgcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACCGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttccatgatactcccgtcttcggtcatcactacgttcatttcgtcctcttcggcagagtcttcaccttattccaaatcccaaaccccctcgcccgtgacaagtccaac                                                                                                           >  2:674822‑M1/1‑107 (MQ=255)                                                                                                                         cgcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctccggcagagcattcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgaca                                                                                                          >  1:216204‑M1/1‑107 (MQ=255)                                                                                                                                 tgttttcctGCCTTCGCCCCTCATCTTACTTTTCTGCAGAAAAAAAAAAGGCGACTCAGCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgc                                                                                                  <  2:527080‑M1/225‑130 (MQ=255)                                                                                                                                      tCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCACCTTCTGCcgtcccctgcacttcaatgatgcgcccgacttcggtcatcactacgttcatctccgcctctgcagccgaggcttcaacgcaatccacatcccaaaccgcctagcctgtcacaattccgacagcaactggcgacc                                                                                             >  2:264923‑M1/1‑94 (MQ=255)                                                                                                                                        aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagctcgcaaaccgcttctccgttcacaattccgacagaaacttcggctac                                                                                            >  1:559743‑M1/1‑92 (MQ=255)                                                                                                                                             ttCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgacccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagcattacacgtattccagagcgcaaaccgcttcgcaattcacaatcccaccagatactgcggctaccatcca                                                                                      >  1:400254‑M1/1‑87 (MQ=255)                                                                                                                                                  cccccactttacttttcgCACGACAAAAAAAAGGCGCTTCCTCCGTCCCCTTAAAAATCAGTTTGCCAGCGCCGCCTCACGCcgtccccggcccttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttca                                                                                 <  2:288109‑M1/220‑147 (MQ=255)                                                                                                                                                     tcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgc                                                                                                                           >  1:73903‑M1/1‑79 (MQ=255)                                                                                                                                                      cATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcactgcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgcc                                                                                                                          <  2:73903‑M1/183‑106 (MQ=255)                                                                                                                                                              ttttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggttacaatccctttcatcggattggttt                                                                     >  1:585873‑M1/1‑70 (MQ=255)                                                                                                                                                                 tCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcttcggattggttttca                                                                  >  1:262724‑M1/1‑67 (MQ=255)                                                                                                                                                                        aCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcctgtcggtctctgcggccgagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgcaacaaactgcggcccccatccctttcctcggatttgtttttcgcttgc                                                            >  2:183982‑M1/1‑60 (MQ=255)                                                                                                                                                                                    ccgctcaGCAGTCGCCTTAAAAAGTAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggattggttttcagcttgccgttttccacc                                                 <  1:689226‑M1/223‑179 (MQ=255)                                                                                                                                                                                    cGACTCATCATGCCCCTTAAAAATCAGTTTGCACGGCCCGCCTTCTGCcgtcacctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacataaacttcggctaccatccctttcatcggattggttttcagcttgccgttttccacc                                                 <  1:674822‑M1/226‑179 (MQ=255)                                                                                                                                                                                      aCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgctcccgtcttcggtcatcactacgttcatgtcggtctctgcggccgagtcttcaacgtattccagatcccaacccgattccccgttcacaattccgacagaacctcagcctacaatccctttaaccgcattggtttttcgcttgccgacttacaccacc                                              >  2:250060‑M1/1‑46 (MQ=255)                                                                                                                                                                                      aCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcgggctctgcggcagagtcttcaacgcattccagatcgcaaacagcttcgccgttcacaattccgacagaaactgcggctaccatccctttaatcggattggttttcagcttgccgttttcaaccagct                                             >  1:62955‑M1/1‑46 (MQ=255)                                                                                                                                                                                      aCTCATCAGTCGCCTTAAAAATCAGCTTGCCAGCGCCGCCTTCTGCcgtcacctgcacttcaatgaagcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgctccgccgttcaccattccgacagaaactgaggctaccacccatttcatcggcttgggtttcagcttgccgttttcccccaac                                              >  2:164482‑M1/1‑46 (MQ=255)                                                                                                                                                                                            ccgtcGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaaggatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggattggttttcagcttgccgttttccaccagcttctgta                                       <  1:701458‑M1/226‑189 (MQ=255)                                                                                                                                                                                                cGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcactgcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggattggttttcagcttgccgttttccaccagcttctgtagc                                     <  1:183982‑M1/226‑191 (MQ=255)                                                                                                                                                                                                  ccTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggatttgttttcagcttaccgttttccaacagcttctgtagcgac                                  >  1:342176‑M1/1‑34 (MQ=255)                                                                                                                                                                                                  actTAAAAATCAGGTTGCCCGCGGCGCCTTCTGCcgtcccctgcccttcaatgatgcgcccgtattcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggattggttttcagcttgccgttttccaccagcttctgtagcgca                                  <  1:602502‑M1/226‑194 (MQ=255)                                                                                                                                                                                                              ttttgCCAGCGCCGCCTCCTGCcctcccctgcacttcaaggctgcgcccgtcttcggtcatcactaccttcatgtcggtctcggcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggattggttttcagcttgccgttttccaccagcttctgtagcgcatctaccagcgcca                     <  2:262724‑M1/227‑207 (MQ=255)                                                                                                                                                                                                               tttGCCCGCGCCGCCTGCTGCcgtccccggcccttcaatgatgcgcacgtcttcggtcatcacgacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggattggttttcagcttgccgttttccaccagcttctgtagcgcatctaccagcgccac                    <  1:437682‑M1/228‑208 (MQ=255)                                                                                                                                                                                                               tttGCCAGCGCCGCCTTCTGCcgtccactgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctttgcggcagagtcttcaacgtattccagctcccaaacctcttccccgttcccaattccgccagacactgaggctaccatccctttcatcgggttggctttcagcttcccgtttctcaccaccttctttacagcatttaccaggccac                     >  2:192302‑M1/1‑21 (MQ=255)                                                                                                                                                                                                                ttGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcaacactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggattggttttcagcttgccgttttccaccagcttctgtagcgcatctaccagcgcc                      <  1:192302‑M1/225‑206 (MQ=255)                                                                                                                                                                                                                                 cgccgtcccctgcccttcaaggaggcgcccgtctgcgggcatcactaagttcaaggcgggctctggggcagagtcttcaacggatgccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccctttcatcggatgggtttgcagcttgccgttttccaccagcttctgtagcgcatctaccagcgccacgcaggcacccgtaatcga  <  2:70831‑M1/227‑226 (MQ=255)                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                  AGATCGCGCCCGGTATTAAACAGCCCGGCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTT  >  NC_000913/3815632‑3816083

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑