Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC NC_000913 1,978,503 Δ776 bp 100% insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1978503–1979269 1979278 10–776 28 [0] [3] 32 insB1–insA insB1,insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19785020 (0.000)26 (0.550) 24/392 NT 100% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

TTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAA  >  NC_000913/1979052‑1979503
                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                
aaaataattagcattagaatagttgcgataagctgcaataagcagaacctcctttttggtttaatatgtccgtacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgt                                                                                                                                                                                                                                  <  1:302067‑M2/1‑1 (MQ=255)
  aataattagcattagaatagttgcgataagctgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgaagcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatacagatcacacaaaacacccaattacttaacaaaaatgtaa                                                                                                                                                                                                                                >  2:556489‑M2/226‑227 (MQ=255)
                     gttgcgataagctgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactggtcactacacacacatacaacggaggggggctgcgattttaaataatgcgtgatgcagatcacccaaaacactcaattacttaacaaacaggTAAAAGAAAAACttttgttttg                                                                                                                                                                                                             >  2:98010‑M2/207‑228 (MQ=255)
                        gcgataatctgcaataagcagaacctcctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgt                                                                                                                                                                                                          <  1:556489‑M2/25‑1 (MQ=255)
                                        agcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatagacgcaactgtactcgtcactacacgcacataaaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaaaataaatgTATAAGTCATACTTTTGTTTTGGGAGTATTTCAATCTGTTa                                                                                                                                                                                          >  2:291957‑M2/188‑228 (MQ=255)
                                             aaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGCAATACTTTTGTTTAGGGTATATTTCAATCTTTAAAAAAg                                                                                                                                                                                     >  2:240513‑M2/183‑228 (MQ=255)
                                                       ttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaattGCTAAGTCATACTTTTGTTTTGGGTGGATTTCAATCTGTTAAAAAGGTTTTcgcta                                                                                                                                                                           >  1:676645‑M2/173‑228 (MQ=255)
                                                             taatatgtccttacaaatagaaacgggtctttacccttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTag                                                                                                                                                                     <  1:556287‑M2/62‑1 (MQ=255)
                                                                         acaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATg                                                                                                                                                         >  1:451680‑M2/155‑228 (MQ=255)
                                                                                 aaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGGGTATTTCAATCTGTTAAAAAGATTTTCGCAACTCTAGCAAGAAAAAATAAAAAAGGa                                                                                                                                                 >  2:174350‑M2/147‑228 (MQ=255)
                                                                                       gtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAacaggaaaattc                                                                                                                                           >  1:658130‑M2/141‑223 (MQ=255)
                                                                                       gtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaaaataaatgTATAAGTCATACTTTTGTTTTGGGGGTATTTCAATCTGTTAAAAAGTTTTTCGTTACGTTAGCAAGCAAAAATGAAACAGGAATAATc                                                                                                                                           >  1:312682‑M2/141‑228 (MQ=255)
                                                                                        ttcttacctttatttaagctttttcctaaatcgacggaactgttatcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCg                                                                                                                                          <  2:220888‑M2/89‑1 (MQ=255)
                                                                                        tctttacacttaactaagatttttccgaaagcgacgcaacggtactcgtcactaccagaacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat                                                                                                                                            <  1:329743‑M2/87‑1 (MQ=255)
                                                                                          tttacacttatcttagttttttcctaaatggacgcaacgttattcgtcactaaacgcacatacaacggaaggggtctgcgattttcaataatgcgttatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaa                                                                                                                                        <  2:262643‑M2/91‑1 (MQ=255)
                                                                                           ttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgagatgcagatcacacacaacactcgattccttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTAAGCTAGCAAGCAAAAATAAAAAAGGaaaaa                                                                                                                                             >  2:329743‑M2/137‑222 (MQ=255)
                                                                                                  tatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAACCAGGAATAACCGAAATGGGATg                                                                                                                                >  1:220888‑M2/130‑228 (MQ=255)
                                                                                                           tttttcctaaatgggcgtaactttacccgatacctccccgacataccactgaagggggccgcgattttcaataatgcgtgatgcagatcacactaaacactcaattacttaacataaatgGATAAGTCATACTTTTGGTTTGGGTATATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcaca                                                                                                                       <  2:372505‑M2/108‑1 (MQ=255)
                                                                                                             tttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaagggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGt                                                                                                                     <  1:98010‑M2/110‑1 (MQ=255)
                                                                                                              ttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTTAATCTGTTAAAAAGTTTTTCGCTCCGCTCGCAAGCAAAAATGAAACAGGAATAATCAAATTGGGATTTTGCGCACAGt                                                                                                                     >  2:472474‑M2/118‑227 (MQ=255)
                                                                                                                                       gtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgAATAAGTCATAc                                                                                                                                                                                                                       >  1:109687‑M2/93‑104 (MQ=255)
                                                                                                                                        tcactacacgcacatacaacagaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACt                                                                                                                                                                                                                      <  2:109687‑M2/13‑1 (MQ=255)
                                                                                                                                         cactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACtt                                                                                                                                                                                                                     >  2:43600‑M2/91‑104 (MQ=255)
                                                                                                                                          actacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttt                                                                                                                                                                                                                    <  1:43600‑M2/15‑1 (MQ=255)
                                                                                                                                            tacacgcacataccacggaggggggctgcgattttcaataatgcgtgatgcagatcaaacaaaaaactcaattacttaacataaatgTATAAGTCATACTTCTGTTTTGAGCGTATTTCAATCTGTTAAAAAGATTTTCGCTACGCTAGCAAGCAAAAATGAAAAAGTAATAATGGAAATGGGATGTTCGGCACAGTCAAAATAACTAACCATaaataatcatattac                                                                                      >  2:199324‑M2/88‑223 (MQ=255)
                                                                                                                                                                     ctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATAc                                                             <  1:475660‑M2/166‑1 (MQ=255)
                                                                                                                                                                            tttaaataatgcgttatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATa                                                       <  2:451680‑M2/172‑1 (MQ=255)
                                                                                                                                                                                        gttatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTaaa                                          <  1:240513‑M2/185‑1 (MQ=255)
                                                                                                                                                                                                                          acaTAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtg        <  1:472474‑M1/227‑9 (MQ=255)
                                                                                                                                                                                                                                atttataattTATATTTTTGTTTTGGGTGTATTTCAAACTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaaca  <  2:312682‑M1/225‑15 (MQ=255)
                                                                                                                                                                                                                                aTGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAACAAGACACTTACCGCACAACAAACTAAgaaagatgcgaaca  >  1:305088‑M1/1‑214 (MQ=255)
                                                                                                                                                                                                                                aTGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGAACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGATATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaaca  >  1:52330‑M1/1‑214 (MQ=255)
                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                
TTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAA  >  NC_000913/1979052‑1979503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: