| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,210,861 | T→G | 21.3% | G27G (GGT→GGG) | rpsU → | 30S ribosomal subunit protein S21 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,210,861 | 0 | T | G | 21.3% | 114.4 / 3.2 | 68 | G27G (GGT→GGG) | rpsU | 30S ribosomal subunit protein S21 |
| Reads supporting (aligned to +/- strand): ref base T (24/23); new base G (16/3); total (42/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.40e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTCACCCTTATAAAAGTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGC‑AATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT‑GGCGGAAGTTCGTCGTCGTGAG‑TTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCG‑CGAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCGGCTTATTTTCGTTTATGAA > NC_000913/3210640‑3211087 | ctcACCCTTATAAAAGTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGC‑AATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGACAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAACAATCCGTTAGACGTAACTCTGAGTCGCTTCAAGCGTTCCTGCGAACAAACAGGGGTTCT‑g > 2:61093/1‑228 (MQ=255) tcACTCTTATAAAAGTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGC‑AATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTAAACGGCCCATGCCGGTAATTAAAACACCTGAAACCAAACCGTTCGACCAAGCCCTGCGGTCCTTCAAGCCTGCCCGCGAAAAAACCGGGGtttgg > 2:694766/1‑224 (MQ=255) cACCCTTATAAAAGTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGC‑AATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTTAGAGTCACATGCCGGTAATTAAAGTACGTGAAAACAAGCCGTTAGACGTAACTCTGCGTAGCTTCAAGCTTTCCGCGGCAAAAGAAGGTGTTTT‑gcg > 1:642754/1‑226 (MQ=255) aCCCTTATAAAAGTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGC‑AATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGCTGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCAAATGCCGGGAATTAAGGTACGAGAAACCGAGCCGTTCGACGCAGCTCGCCGGCGCTTCAGACGTTCCTTCGTAAAACCGGGTGTTTT‑GCCg > 1:391539/1‑228 (MQ=255) aCCCTTATAAAAGTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGC‑AATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT‑GGc > 1:422301/1‑227 (MQ=255) aCCCTTATAAAAGTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGC‑AATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAACAAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGGGTTCT‑gggg > 2:489255/1‑226 (MQ=255) tataAAAGTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGC‑AATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAACAGGGGTTAT‑GGCGGCAgg > 2:375476/1‑227 (MQ=255) tataAAAGTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGC‑AATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGAAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTGCT‑GGCGGAAGt > 1:427007/1‑228 (MQ=255) tataAAAGTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGC‑AATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAACCGTTCGACTTAGCTCTGCGTCCCTTCAACCGTTCCTGCGAAAAACAAGGGGTTCT‑GGCGGAAGt > 2:653326/1‑228 (MQ=255) tataAAAGTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGC‑AATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGGGAAAACAAGCCGTTCAACGAAGCCCTGGGGCGCTTCAGGCGTTCCTGCCAAAAAGCAGGGGTTCG‑GGGGGAAGt > 2:343395/1‑228 (MQ=255) ataAAAGTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGC‑AATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTAAGAGGCACATGCCGGTAATTAAAGTACGCGAAAACGAGCCGTTCGACGTAGCTCTGCATCGCTTCAAGCGTTTCTGCTGAAAAGAAGGTGTTCT‑GCCGCAAGtt > 1:234339/1‑228 (MQ=255) taAAAGTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGC‑AATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCCCATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGCCGTAGCTCTGCGTCGCTTCAAGCGTTCATCCGAAAAAGCAGGGGTTCT‑GCCGGAAGTtc > 1:263820/1‑228 (MQ=255) taAAAGTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGC‑AATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGGGTTCT‑GGCGGAAGCtc > 1:385472/1‑228 (MQ=255) aaaaATCCATTTAAAAAAAGGCCGCGGGGTTTTAAAAAGC‑GGAGCAAATGGCAAGAAAAGTCCGGAACAATTGGAAAAAAGCTGGGGTTGATGCAAGCGGAAAACCGAATAAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT‑GGCGGAAGTtcg < 2:2848/228‑1 (MQ=255) aaGTCCCTTACAAAAACGGCCGCGGTGCTTTACAAAGCAGCAGC‑AATTGACGTAAAATTCCGCCCCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT‑GGCGGAAGTtcgtc < 1:666349/228‑1 (MQ=255) gTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGC‑AATTGCAGTAAAATTCCGCACCATTTTGAATTAACTTGGCGTTGATACCAGCGGCAAACCGAATTAATCAAAGGCGAGAGGCACATGCTGGTAATTAAAGTAAGTGATAACAAGCGGTTCGAAGTAGCTCTTCTTCGCTTCAAACGTTCCTGCGAACAATCAAGAGATCT‑GAGGGAAGttgccg > 1:99570/1‑222 (MQ=255) gTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGC‑AATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAACCGTTCCTGCGAAAAAGCAGTGGTTCT‑GGCGGAAGTtcctcgt > 1:358697/1‑228 (MQ=255) gTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGC‑AATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGCAATTAAAGAACGTGAAAACGAGCCGTTCAACGTAGCTCTGCGTCCCTTTAAGCGTTACCGCGAAAAAGCAGGGTTTCT‑GGCGGAAATtcgtcgc > 2:662862/1‑227 (MQ=255) gTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGC‑AATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTAAGAGGCACATGCCGGCAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGACGGTGTTCT‑GGCGGAAGGttgtctt > 2:496515/1‑226 (MQ=255) tctgtCAAAAAAGGCCGCGGTGCTTTACAAAGCGGCAGC‑AATGGCAGTAAAATACCGAAACATTTTGAAATAAGCTGGCGTTGATTCCAGCGGCAAACCGAATTAGTCAAGGGTGAGGGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT‑GGCGGAAGTTcgtcgtcgt < 2:639113/224‑1 (MQ=255) ccTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGC‑AATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTTAGAGGCCCATGCCGGTAATTAAAGTACGGTAAAACGAGCCGGTCAACGTAACTCTACGTCGCTTCAATCGTTCCTCCGCAAAAGCAGGGGTCTA‑GGCGGAAGttcttctttgt > 2:412608/1‑223 (MQ=255) tttCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGC‑AATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAACGACCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGGTTTCT‑GCCGGAAGTtcgtcgcccggg > 2:147943/1‑222 (MQ=255) ttaaaaaatGGCCCAGGTGCATTACAAGGAAGCAGC‑AAGAGCGGTAAAATCCCACACTTTTTAGAAATAAGCGAGCGTGGATGCGACCGGCAAACCGAATAAGTCAAAGGTGGAAGGGACATGCCGGAAATTAAAGTACGTGAAAACAAGCCGTACGACGTAGCTCTGGGTCGCTTCAATCGTTCCTGCGAAAAAGAAGGTGTTCT‑GGCGGAAGTTCGTCGTCGTGAg < 2:99570/225‑1 (MQ=255) ttCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGC‑AATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGAGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAACTAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTACTGCGCAAAAGCAAGGGGTCT‑GGCGGAAGTTCGTCGTCGTggg > 1:672154/1‑226 (MQ=255) ccGGGGTGGTTTACAAAGCAGCAGC‑AAGTGCAGAAAAATTCCGCCCAATTTTGAAATAAGCTGGCGGTTATGCCAGCGGCAAACCAAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAACCGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT‑GGCGGAAGTTCGTCGTCGTGAG‑TTCTATGaaaa < 1:303338/228‑1 (MQ=255) cgGTGCTTTACAAAGCAGCAGC‑AATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGCTCCCAGCGACAAACCGAATTAATCACAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAACCGTTCGCCGGAGCGCTGCGTCGATTCACGAGTTCCTCCGAAAAATCCGGTGTGCT‑GGCGGAGGATCGTGGT‑GGGAGTTTCGATGAAAAAcc > 2:419631/1‑228 (MQ=255) ttttAAACAGCAGCAGC‑AATTGCAGTAAAAACCCGCAACATTTAGAAATAAGCGGGGTTTTATGCGAAGGACAAACGCAATAAATCAAAGGGGGGAGGCTACTGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT‑GGCGGAAGTTCGTCGTCGTGAG‑TTCTATGAAAAACCGACTa < 2:480795/227‑1 (MQ=255) cTTTACAAAGCAGCAGC‑AATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGGGTTCT‑GGCGGAAGTTCGTCGTCGTGAG‑TTCTATGAAAAAccactta > 1:243325/1‑223 (MQ=255) agcagcagc‑AATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAACAAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT‑GGCGGAAGTTCGTCGTCGTGAG‑TTCTATGAAAAACCGACTACCGCACGt > 1:508117/1‑228 (MQ=255) cagcagc‑aATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT‑GACGGAAGTTCGTCGCCGTGTG‑TTCTTTGAAAAACGGACCACCGAAccaa > 1:23126/1‑224 (MQ=255) cagcagc‑aATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTACTGCGAAAAAGCAGGAGTTCT‑AGCGGAACTTCGTCGTCGGGAG‑TTCTATGAAAAACCGCCTACCGAACATaa > 1:363051/1‑228 (MQ=255) aaTTGCAGTAAAATTCCGCACCATTTTGAAAAAAGCGGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGTTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT‑GGCGGAAGTTCGTCGTCGTGAG‑TTCTATGAAAAACCGACTACCGAACGTAAGCGCGCt < 1:372063/228‑1 (MQ=255) atggCAATAAAATTCCGAACAATTTTGAAATAAGCGGGCGTTGACGCCAACGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT‑GGCGGAAGTTCGTCGTCGTGAG‑TTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTa < 1:652716/225‑1 (MQ=255) ttGCAGTAAAATTCCGCACCATTTTGAAATAAGCGTGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT‑GGCGGAAGTTCGTCGTCGTGAG‑TTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTaa < 1:148238/228‑1 (MQ=255) aaTTCCGCACCATTTTGAAATAAGCTGCCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTGCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT‑GGCGGAAGTTCGTCGTCGTGAG‑TTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTg < 1:296387/227‑1 (MQ=255) cACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT‑GGCGGAAGTCCGTCGTCGTTAG‑TTCTATGAAAAACCGACTACCGAACGAAAGCGCGCTAAAGCTTCTgacgggaac > 1:478544/1‑220 (MQ=255) aaTTTGGAAATAAGGTGGCTGGGAAGCCAGCGGAAAACCGAAATAAACAAGGGGGAGGGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT‑GGCGGAAGTTCGTCGTCGTGAG‑TTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGt < 2:90696/227‑1 (MQ=255) ttttGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGGACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT‑GGCGGAAGTTCGTCGTCGTGAG‑TTCTATGAAAAACCGACTACCGAACGTAAGCGCGCGAAAGCTTCCGCAGGCAAACGTCa > 1:379443/1‑228 (MQ=255) aGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT‑GGCGGAAGTTCGTCGTCGTGAG‑TTCTATGAAAAACCGACTACCGAACGTaa > 1:5268/1‑188 (MQ=255) ggtgagtGCCAGCGGAAAACACGATAAATCAAGGGGGAGGGGCACTGGCCGGTAATTAAAGTAGGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGGGTTCT‑GGCGGAAGTTCGTCGTCGTGAG‑TTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCt < 2:380262/222‑1 (MQ=255) aaTTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTCGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGGGTTCT‑GGCGGACGTTCGTCGTCGTGAG‑TTCTATGAAAAACCGACAACCGAACGAAAGCGCGCTAAAGCTTCTTAAGTGAAACTACACGCGAAGAAACAGGCTCGCCGAAAACACA‑GCCGCAccc > 2:618530/1‑226 (MQ=255) aaTTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT‑GGCGGAAGTTCGTCGTCGTGAG‑TTCTATGAAAAACCGACTACCGAACGTAAg > 1:570531/1‑161 (MQ=255) atgaaTCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT‑GGCGGAAGTTCGTCGTCGTGAG‑TTCTATGAAAAACCGACTACCGAACGTAAgc < 2:570531/158‑1 (MQ=255) ttaacaaaaGGTGGAGGGCACATGCCGGTAATTAAAGTATGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTAGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT‑GGCGGAAGTTCGTCGTCGTGAG‑TTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCG‑CGAAAACGCACGCCGCACTCGt < 2:385472/222‑1 (MQ=255) aaTCAAGGGGGAGAGCGACATGCGGGTAATTAAAGTAGTTGAAAAGGAGCGTGTGGACGTAGGTCTGGGGCGCTTCAAGGTTTCCTGCGAAAAAGCAGGTGTTCT‑GGCGGAAGTTCGTCGTCGTGAG‑TTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCG‑CGAAAACGCACGCCGCACTCGTc < 2:285829/227‑1 (MQ=255) ggaagagGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT‑GGCGGAAGTTCGTCGTCGTGAG‑TTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCG‑CGAAAACGCACGCCGCACTCGTCTGTACTaa < 1:105912/224‑1 (MQ=255) aaTTAAAGGTCGGTAAAACGGGCCGTTCGGCGTAGCCCTGCGTTCCTGCAAGCGTTCCTTCGAAAAAGCAGGGGTTCT‑GGCGGGAGTTCGTCGTCGTGAG‑TTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCG‑CGAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGTTGctc < 2:430552/227‑1 (MQ=255) aGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT‑GGCGGAAGTTCGTCGTCGTGAG‑TTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCG‑CGAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCCAGAGCGTTGCTCCCCgcgc > 1:514340/1‑225 (MQ=255) cgggAAAACGAGCCGTTCGACGTAGCTTTGCGTCCCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT‑GGCGGAAGTTCGTCGTCGTGAG‑TTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCG‑CGAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGTTGCTCTCCGATCAGa < 1:375476/224‑1 (MQ=255) cGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT‑GGCGGAAGTTCGTCGTCGTGAG‑TTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGACGAAACTGGCTCG‑CGAAAACGCACGCCCCCCTCGCCTGCCGAAATTACCCCAGAACGTTGCCCTCCGATCaacc > 2:514247/1‑225 (MQ=255) cGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT‑GGCGGAAGTTCGTCGTCGTGAG‑TTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAACCTGGCTCG‑CAAAAACCCACGCCGCACCCGTCCGTCCTAATTCCCCCACAGCGGTACCCTCCgcacacac > 2:255865/1‑221 (MQ=255) cGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT‑GGCGGAAGTTCGTCGTCGTGAG‑TTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCG‑CGAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGTTGCTCTCCGATCAGAc > 1:234487/1‑228 (MQ=255) gAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT‑GGCGGAAGTTCGTCGTCGTGAG‑TTCTATGAAAAACCGACTGCCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCG‑CGAAAACGCAAGCCGCACTCGTCTGCAATAATTCCCCGAGAGGGTTGCTCTCCGATCAGACCgg > 1:37881/1‑227 (MQ=255) gAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT‑GGCGGAAGTTCGTCGTCGTGAG‑TTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCt > 2:135462/1‑129 (MQ=255) aaaaCGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT‑GGCGGAAGTTCGTCGTCGTGAG‑TTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCtt < 1:135462/129‑1 (MQ=255) atccGTTCGACGTAGCGCTGCTTCGCTGCAAGCGTTCCTGCGAAAAAGCAGGTGTTAT‑GGCGGAAGTTCGTCGTCGTGAT‑TTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCG‑CGAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGTTGCTCTCCGATCAGACCGagttgt < 1:412608/224‑1 (MQ=255) gTTTGACTTTGCTCTGCGCTGCTTCAAGCGTTCCTGCAAAAAAGCAGGTGTTCT‑GGCGTAAGTTCGTCGTCGTGAG‑TTCTATGAAAACCCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCG‑CGAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGTTGCTCTCCGATCAGACCGagttgtagttg < 2:150760/227‑1 (MQ=255) ggttggCGTCCCTTCAAGCGTTCCTGCGAAACAGCAGGTGTTCT‑GGCGGAAGTCCGTCGTCTTGAG‑TTCGAAGAAAACCCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCG‑CGAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTg < 2:598827/222‑1 (MQ=255) ctctGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT‑GGCGGAAGTTCGTCGTCGTGAG‑TTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCG‑CGAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGTTGCTCTCCGGTCAGACCGAGTTGTAGTTGTAAGGcctgggt > 1:408866/1‑223 (MQ=255) ctctGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT‑GGCGGAAGTTCGTCGTCGTGAG‑TTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGCCACGCGAAGAAACTGGCTCG‑CGAAAACGCACGCCGCAATCGTCTGTACTAATTCCCCGACAGCGTTGCTCTCCGATCAGACCGCGTTGTAGTTGTAAGGcctggct > 1:79138/1‑223 (MQ=255) ctctGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGGGTTCT‑GGCGGAAGTTCGTCGTCGTGAG‑TTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACAGGCTCG‑CGAAAACGCACGCCGCCCGCGGCTGTGCTAATTCCCCGAGAGCGGTTCTCCCCGGCCAAACCCAGTTTTAGTTGTAAGGCCGGGcg > 2:419657/1‑227 (MQ=255) gCGTCGCTTGAAGCGTTCGTGAGAAAAAGCAGGTGTTCT‑GGCGGAAGTTCGTCGTCGTGAG‑TTCTAAGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCG‑CGAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTg < 1:264454/222‑1 (MQ=255) ggTCGTTTCAAGCGTTCCTGCAAAAAAGCAGGTTTTCC‑GGCGGAAGGTCGGCGTCGTGAG‑TTCTAGGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCG‑CGAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGa < 2:408866/227‑1 (MQ=255) gTCGCTTCAAGCGTTCCTGCGAAAGAGCAGGGATGCT‑GGCGGAAGTTCGTCGTCGTAAG‑TTCTAGGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTAAAACGTCACGCGAAGAAACTGGCTCG‑CGAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGa < 1:248100/227‑1 (MQ=255) gTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT‑GGCGGAAGTTCGTCGTCGTGAG‑TTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCG‑CGAAAACGCACGCCGCACTCGTCTGTACCAATTCCCCCAGAGCGTGGCTCCCCGACCCGCCCCGGTTGTAGTTGTAAGGCCGAGCTTCCGaa > 2:41038/1‑228 (MQ=255) cTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT‑GGCGGAAGTTCGTCGTCGTGAG‑TTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCG‑CGAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTGGTTGTAAGGCCGTGCTTCCGAAAGGa > 1:434442/1‑228 (MQ=255) atggTTCCAGCGAAAAAGC‑GGTGTTTTCGGCGGAAGTTCGGCGGAGTGAG‑TTCTATGAAAAACCGACTACCGAACTTAAGCCCGCTAAAGCTTCTGCAGTGAAACGGCACGCGAAGAAACTGGCTCG‑CGAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATgcg < 2:400228/225‑1 (MQ=255) gCGAAAAAGCAGGTGTTCT‑GGCGGAAGTTCGTCGTCGTGAG‑TTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCG‑CGAAAACGCACGCCGCACTCGTCTGTACTCATTCCCCGAGAGCGTTCCTCTCCGATCGGACCGGGTTGTAGTTGTAAGGCCGTGCTCCCGAAAGGAACTCGCGGCTTAtt > 1:558931/1‑228 (MQ=255) gtgtTCT‑GGGGGAAGGTCGTCGTGGTGAG‑TTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGGGAAACGTCACGCGAAGAAACTGGCTCG‑CGAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCGGCTTATTTTCGTTTATGaa < 2:422301/228‑1 (MQ=255) | CTCACCCTTATAAAAGTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGC‑AATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAACGAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCT‑GGCGGAAGTTCGTCGTCGTGAG‑TTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCG‑CGAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCGGCTTATTTTCGTTTATGAA > NC_000913/3210640‑3211087 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |