New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3429828 =	105 (1.440)	3 (0.040)	3/396	NT	2.9%	coding (196/258 nt)	yrdB	DUF1488 family protein
	?	NC_000913	= 3429824	101 (1.440)					coding (200/258 nt)	yrdB	DUF1488 family protein
Rejected: Frequency below/above cutoff threshold.

GACGTAGAACCAGTTATAAAGCAATTGCAGGAGGAATTGTCCGCGTGAATCAGGCCATCCAGTTTCCGGACAGGGAAGAGTGGGACGAGAATAAAAAATGTGTATGTTTTCCCGCTCTCGTGAATGGTATGCAACTGACATGCGCGATCTCTGGCGAGAGTCTGGCGTATCGCTTTACTGGAGATACGCCAGAACAGTGGTTAGCGAGTTTTCGTCAGCATCGCTGGGACCTGGA‑A‑G‑AAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3430067‑3429828 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ga‑a‑g‑aagCGGAAAACTTAATTCAGGAACAAAGTGAAGATGATCAAGGCTGGGTCTGGTTACCCTGATCCAGATATTCGTCCTTCCATTTCACGTAATTATTCGCGGAATAGCGTAACCCAGCCTTCTCTTCATCACTTAACGGGCGGATCTGTTTGACGGGGCTACCGAGATACAGATATCCGCTCTCCAGCCGTTTATTTTGTGGGACCAGACTACCCGCACCAATCATCACATCATCTTC  <  NC_000913/3429824‑3429590                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GACGTAGAACCAGTTATAAAGCAATTGCAGGAGGAATTGTCCGCGTGAATCAGGCCATCCAGTTTCCGGACAGGGAAGAGTGGGACGAGAATAAAAAATGTGTATGTTTTCCCGCTCTCGTGAATGGTATGCAACTGACATGCGCGATCTCTGGCGAGAGTCTGGCGTATCGCTTTACTGGAGATACGCCAGAACAGTGGTTAGCGAGTTTTCGTCAGCATCGCTGGGCCCTGGA‑A‑G‑AA                                                                                                                                                                                                                                              >  1:522630/1‑239 GACGTAGAACCAGTTATAAAGCAATTGCAGGAGGAATTGTCCGCGTGAATCAGGCCATCCAGTTTCCGGACAGGGAAGAGTGGGACGAGAATAAAAAATGTGTATGTTTTCCCGCTCTCGTGAATGGTATGCAACTGACATGCGCGATCTCTGGCGAGAGTCTGGCGTATCGCTTTACTGGAGATACGCCAGAACAGGGGTTAGCGAGTTTTCTTCAGCATCGCTGGGACCTGGAcaca                                                                                                                                                                                                                                                 >  1:283590/1‑235                  AAAGCAATTGCAGGAGGAATTGTCCGGGTGAATCAGGCCATCCAGTTTCCGGACAGGGAAGAGTGGGACGAGAATAAAAAATGTGTATGTTTTCCCGCTCTCGTGAATGGTATGCAACTGACATGCGCGATCTCTGGCGAGAGTCTGGCGTATCGCTTTACTGGAGATACGCCAGAACAGTGGTTAGCGAGTTTTCGTCAGCATCGCTGGGACCTGGA‑A‑G‑AAG                                                                                                                                                                                                                                             <  1:124296/223‑1                                                      GCCATCCAGTTTCCGGACAGGGAAGAGTGGGACGAGAATAAAAAATGTGTATGTTTTCACGCTCTCGTGAATGGTATGCAACTGACATGCGCGATCTCTGGCGAGAGTCTGGCGTATCGCTTTACTGGAGATACGCCCGACCGGTGGTTAGCGATGTTTCGCAAGCTTCCCTGGGACCTGGATACGAAAGCGGAAAACTTAATTCAGGGAAAAAGTGAAGAAGAACAAGGCTGGGatgg                                                                                                                                                                                            >  2:850647/1‑235                                                                                           ATAAAAAATGTTTAGGTTTTCCCGGCCTCGTGAATGGTATGCAACTGACATGCGCGATCTCTGGCGAGAGTCTGGCGTATCGCTTTACTGGAGATACGCCAGAACAGTGGTTAGCGAGTTTTCGTCAGCATCGCTGGGACCTGGA‑A‑G‑AAGCGGAAAACTTAATTCAGGAACAAAGTGAAGATGATCAAGGCTGGGTCTGGT                                                                                                                                                                                          <  2:380712/201‑1                                                                                                     TGTATGTTTTCCCGCTCTCGTGAATGGTATGCAACTGACATGCGCGATCTCTGGCGAGAGTCTGGCGTATCGCTTTACTGGAGATACGCCAGAACAGTGGTTAGCGAGTTTTCGTCAGCATCGCTGGGACCTGGA‑A‑G‑AAGCGGAAAACTTAATTCAGGAACAAAGTGAAGATGATCAAGGCTGGGTCTGGTTACCCTGATC                                                                                                                                                                                >  1:380712/1‑201                                                                                                                                                                                                                                             A‑G‑AAGCGGAAAACTTAATTCAGGAACAAAGTGAAGATTATCAAGGCTGGGTCTGGTTACCCTGATCCAGATATTCGTCCTTCCATTTCACGTAATTATTCGCGGAATAGCGTAACCCAGCCTTCTCTTCATCACTTAACGGGCGGATCTGTTTGACGGGGCTACCGAGATACAGATATCCGCTCTCCAGCCGTTTATTTTGTGGGACCAGACTACCCGCACCAATCATCACATCATCTT   <  2:467174/239‑1                                                                                                                                                                                                                                               atAAGCGGAAAACTTAATTCAAGAAAAAAGGTAATATTATCAAGGCCGGGTTTGGTTACCCTTATCCAGTGATTCGTCCTTCCATTTCACGTAATTATTCGCGGAATAGCGTAACCCAGCCTTCTCTTCATCACTTAACGGGCGGATCTGTTTGACGGGGCTACCGAGATACAGATATCCGCTCTCCAGCCGTTTATTTTGTGGGACCAGACTACCCGCACCAATCATCACATCATC     <  2:565594/235‑1                                                                                                                                                                                                                                                  AGCGGAAAACTTAATTCAGGAACAAAGTGAAGATGATCAAGGCTGGGTCTGGTTACCCTGATCCAGATATTCGTCCTTCCATTTCACGTAATTATTCGCGGAATAGCGTAACCCAGCCTTCTCTTCATCACTTAACGGGCGGATCTGTTTGACGGGGCTACCGAGATACAGATATCCGCTCTCCAGCCGTTTATTTTGTGGGACCAGACTACCCGCACCAATCATCACATCATCTTC  <  1:758822/237‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GACGTAGAACCAGTTATAAAGCAATTGCAGGAGGAATTGTCCGCGTGAATCAGGCCATCCAGTTTCCGGACAGGGAAGAGTGGGACGAGAATAAAAAATGTGTATGTTTTCCCGCTCTCGTGAATGGTATGCAACTGACATGCGCGATCTCTGGCGAGAGTCTGGCGTATCGCTTTACTGGAGATACGCCAGAACAGTGGTTAGCGAGTTTTCGTCAGCATCGCTGGGACCTGGA‑A‑G‑AAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3430067‑3429828 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ga‑a‑g‑aagCGGAAAACTTAATTCAGGAACAAAGTGAAGATGATCAAGGCTGGGTCTGGTTACCCTGATCCAGATATTCGTCCTTCCATTTCACGTAATTATTCGCGGAATAGCGTAACCCAGCCTTCTCTTCATCACTTAACGGGCGGATCTGTTTGACGGGGCTACCGAGATACAGATATCCGCTCTCCAGCCGTTTATTTTGTGGGACCAGACTACCCGCACCAATCATCACATCATCTTC  <  NC_000913/3429824‑3429590

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.