Predicted mutation
evidence seq id position mutation freq annotation gene description
JC NC_000913 1,707,847 Δ10 bp 19.1% coding (929‑938/2223 nt) rsxC → SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 170784649 (0.670)11 (0.150) 11/404 NT 19.1% coding (928/2223 nt) rsxC SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex
?NC_000913 1707857 = 45 (0.630)coding (939/2223 nt) rsxC SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex

TAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTGCCAATGAACTTGGCGAACCACAGGAAGAACAAAGCTGCATCCGGTGTAGCGC  >  NC_000913/1707611‑1708063
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                          
taagtatttttCTCTGCGGGTGTTTCCAACCAAATATCCCTCTGGTGGTGCTAAACAATTAACCCACATTCTGACCGGGAAGCAGGTTCCACGTGGCGGGCGTGCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTAGGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCt                                                                                                                                                                                                                         <  2:422288/231‑1 (MQ=255)
          tctcTGCGGGTGATTCCAACCAAATATCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCt                                                                                                                                                                                                               <  1:275763/239‑1 (MQ=255)
                      aTTCCACACAAATTTCCTTGCGGGCGGTCTAAACAATTAACCCTCCTGCTTACCGGGGAGGCGGTCCCAGATGGGTGGAAGTGATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGGTTATGCAGTGAAACGTGGCGTTATTGATGGCGAGCCAATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGt                                                                                                                                                                                                   <  2:801802/239‑1 (MQ=255)
                      aTTCCAACCAAATATCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGAAATCGCTCGCCCGGGGAACGTCTGGGCACGGCTTGGGAAGCCaag                                                                                                                                                                                                   >  1:586012/1‑237 (MQ=255)
                          ccaccaaATTTCCTTCTGGCGGTGCTAAACAATTAACCTCAATTCTGACCGGGAAGCAGGTGCCGCGTGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGGCGGCATTGCTTATGCAGTGAAACGGGCCGTTATTGATGGCGGGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGt                                                                                                                                                                                               <  2:744323/237‑1 (MQ=255)
                           caccaaTTTTCCTTCGGGCGGTGTTAAAACATTACCCTCCATTCTGGCCGGGAAGCAGGTTCCCCCGGGCCGGCTTTCAACCGATTGCGGCGTATTAATGGAAACCGGCGGCAATGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTc                                                                                                                                                                                              <  2:586012/238‑1 (MQ=255)
                           aaccaaATATCCTTCTGGCGGTTCTAAACAATTAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTc                                                                                                                                                                                              <  1:53589/239‑1 (MQ=255)
                                 atatCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGCCGCCAGTGCGTCATTTAt                                                                                                                                                                                        >  1:246045/1‑239 (MQ=255)
                                      cctttcggCGGTGTCAAACAATTAACCTTCATTCTGACCGGGAAGCAGGTTCCCCATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTTACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGaa                                                                                                                                                                                    <  2:246045/233‑1 (MQ=255)
                                        tCTGGCGGTGCTAAACAATTAACCTACATTCTGACCGGGAAGCAGGGTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAATCGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGgctggggacgccagtgcgtcatttattgaatgatgccggattc                                                                                                                                                                                 <  1:228737‑M1/239‑44 (MQ=255)
                                          cTGGCGGTGCTAAACAATTAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTCACTGGCGAAGCAATCCCCCGCCCGGGCAACGTCTGGGCCCGCCTGGGGACGCCAGTGCGTGATTTCTTTAatga                                                                                                                                                                                 >  1:960452/1‑238 (MQ=255)
                                             gCGGTGCTAAACAATTAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGACAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTACCCCTGACTTGCGAAGCAATCACCAGCACGGGCACCGCCTGGGCACGGCCGGGGACGCCCGAGGGTCCTTTTTTgtaaagggcc                                                                                                                                                                             >  2:390554/1‑230 (MQ=255)
                                                 tGCAAAACAATTAACCTAAATTCGGACCGGGAAGCCGGTTCCACATGGCGGGCCTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGa                                                                                                                                                                          <  1:682028/238‑1 (MQ=255)
                                                   cTAAACAATTAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGGATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCCCGCCCCGGGAACGgcttggggcgccagggcgtcatttattgaataatgccggcttcttcccccct                                                                                                                                                                        >  1:599025‑M1/1‑186 (MQ=255)
                                                    tAAAAAATTTACCCTCCTTATGGCCGGGAAGCAGGTTCCAAGTGGGGGGGGTTCATCGGGGCGCGGAGTATTAATGCAAAACGTCGGCACTGCTTAGGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTGGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTc                                                                                                                                                                       <  2:86504/238‑1 (MQ=255)
                                                           ttAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCGCGCCCGGGCAACGTCTGGGCACGGCCGGGGGCGCCAGTGCGTGCTTCCTTGAATGGTTCCGGGTTATGTCCct                                                                                                                                                                >  1:187779/1‑238 (MQ=255)
                                                                cTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCt                                                                                                                                                                                                               <  1:754978/186‑1 (MQ=255)
                                                                   cATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTTATGGCGAGCCGATTACCGATCGTGTTGTAACCCTTCCTGGCGAAGCAATCGCTCTCCCGGGCAACGCCTGGGCACGGCTGGGGCCCCCAGTCGGTCCTTTTTTGATTGATACTCGATTCTGCCCCTCTGcccacc                                                                                                                                                       >  2:153646/1‑235 (MQ=255)
                                                                        tGACCGGGAAGCCGGTTCCACATGGCGGGGCTTCTCCCGTTATCGGCGTATTAATTCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGGGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATg                                                                                                                                                  <  2:521863/239‑1 (MQ=255)
                                                                        tGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATg                                                                                                                                                  <  1:740143/239‑1 (MQ=255)
                                                                                       ttCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGa                                                                                                                                                                                                          <  1:219231/168‑1 (MQ=255)
                                                                                        tcccatgggcgggtgTTCATCCGATTTCGGCTTATTAATGCAAAACGTCGGCACGGTTTAGGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGcc                                                                                                                                  <  2:835722/232‑1 (MQ=255)
                                                                                        tCCCCATGGGGGGGGTTCACCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGGTCCGTTATGGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGcc                                                                                                                                  <  2:237402/239‑1 (MQ=255)
                                                                                         ccACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTTAATGATGCCGGATTCTTCCCCTCTGCCGTTCAAATGGTGATTATGGGTGGcc                                                                                                                                  >  1:638964/1‑238 (MQ=255)
                                                                                         cagcctGGCGGGCTTTCATCCGATAACGGCGTATTAATTCAAAACGGCGGCACTGCTTAAGCAGTGAAACGGGCCGTTAGTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGcc                                                                                                                                  <  1:561843/233‑1 (MQ=255)
                                                                                                gcgggcgTTCAACCGATATCGGCGTATTAAGGCAAACCGTCGGCACTGCTTATGCAGTGAACCGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTaa                                                                                                                            <  1:921360/237‑1 (MQ=255)
                                                                                                   ggcgTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGgctgggggcgccagtgcggcatttattgaatgatgccggattctgcccccctgccgatcaaatggggattatggggggccccccaatgggctttaccttg                                                                                                                        >  2:208495‑M1/1‑138 (MQ=255)
                                                                                                                tatCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGAt                                                                                                                                             <  1:251184/204‑1 (MQ=255)
                                                                                                                                   aaCGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGTGGAGCCCAGTGCGTCCTTTATTGAATGATGCCGGATTCTGCCCCCCTGCCCATCAATTGGGGATTATGGGTGGCCCGCAAAGTGGCTTTTCCTGGCCATGCCGTGTAGTCCCGGtgga                                                                                       >  2:659145/1‑236 (MQ=255)
                                                                                                                                   aaCGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGCCTGGATGTCCCGGTCGt                                                                                       >  1:945289/1‑239 (MQ=255)
                                                                                                                                     cgtgcgCACTGCTTATGCAGTGAAACGTGCCTGTAGTGAGGGCGAGCCGATTACCGAGCGTGTTGGAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTaa                                                                                     <  1:451021/234‑1 (MQ=255)
                                                                                                                                        cGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAATTGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGCCGTAAGGa                                                                                  >  1:732833/1‑239 (MQ=255)
                                                                                                                                                cTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGgctggggacgccagtgcgtcatttattgaatgatgccggattctgcccccctgccggtcaaatggtgattatgggtggcccgctaatgggctttaccttgccatggctggatgtcccgggcgtaaagattcccaaccgtcttttgg                                                                          >  2:694112‑M1/1‑92 (MQ=255)
                                                                                                                                                      cAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATg                                                                                                                                                  <  1:457883/161‑1 (MQ=255)
                                                                                                                                                          gAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTggg                                                                                                                                                                                                                      >  1:324882/1‑89 (MQ=255)
                                                                                                                                                          gAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTggg                                                                                                                                                                                                                      <  2:324882/89‑1 (MQ=255)
                                                                                                                                                          gAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAAct                                                                         >  2:962616/1‑230 (MQ=255)
                                                                                                                                                          gAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAAct                                                                         <  1:962616/230‑1 (MQ=255)
                                                                                                                                                          gAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGGCCGTCATTTATTGAATGATGCCGGGATCGGCCCCTCTGCCGACCAAATGGTGATTATGGGTGGCCCGCTAATGGGCCTTAACTTGCCAAGGCTGGATTGCCCGGCGGTAAAAATTACAAAcatgtcaatg                                                                 >  2:78463/1‑229 (MQ=255)
                                                                                                                                                                      tATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTGcc                                                    <  1:390554/238‑1 (MQ=255)
                                                                                                                                                                        tggggggCGGGCCGGTTCCCGGGGGTGTGGACACCCTGACGGGCGAAGTAATCGCTCGCCCGGGCAAGGGCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTGCCAAt                                                 <  2:638964/234‑1 (MQ=255)
                                                                                                                                                                             ggCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGgctggggacgccagtgcgtcatttattgaatgatgccggattctgcccctctgccgatcaaatggggattatgggtggcccgctaatgggctttaccttgccatggctggatgtcccgggcggaaagattaccaactgtctggtggctccctgtgccaatgaaactggcgaaac                                              >  2:82708‑M1/1‑64 (MQ=255)
                                                                                                                                                                             ggCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGGCCCCTCTGCCAATGAACt                                            >  1:657211/1‑239 (MQ=255)
                                                                                                                                                                               cGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTCCCTTGCCATGGCGGGATGTCCCGGTCGTAAAAATTACCACTTATCTGTGGGCTCCCTCACCCAAAGAAATTg                                          >  2:584516/1‑239 (MQ=255)
                                                                                                                                                                                  gCCCATTTCCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGgctggggacgccagtgcgtcatttattgaatgatgccggattctgcccctctgccgatcaaatggtgattatgggtggcccgctaatgggctttaccttgccatggctggatgtcccggtcgtaaagattaccaactgtctgttggctccctctgccaatgaacttggcgaaccacagg                                         <  1:742879‑M1/238‑180 (MQ=255)
                                                                                                                                                                                   gcctttACCGGGCGTTTTGTAGCCCTGTCGGGGGAAGCAATCGGTCGCCCGGGCAACGTCTGGCGAGGGCTGGGGACGCCAGTGCGTCATTTATTGAATGAGGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGGGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTGCCAATGAACTTGGCg                                       <  2:850857/234‑1 (MQ=255)
                                                                                                                                                                                   ccGATTACCGAGCGGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGgctggggacgccagtgcgtcatttattgaatgatgccggattctgcccctctgccgatcaaatggtgattatgggtggcccgctaatgggctttaccttgccatggctggatgtcccggtcgtaaagattaccaactgtctgttggctccctctgccaatgaacttggcgaaccacaggaa                                       <  1:694112‑M1/238‑182 (MQ=255)
                                                                                                                                                                                       tttccGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGACGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTGCCAATGAACTTGGCGAAcc                                   <  1:769015/235‑1 (MQ=255)
                                                                                                                                                                                           cgggCGTTTTGTACCCCTGACTGGGGAAGCAATGGCTCCCCCGGGCAACGTCTGGGCAGGGCTGGGGACGCCTGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTGCCAATGAACTTGGCGAACCACAgg                              <  2:732833/236‑1 (MQ=255)
                                                                                                                                                                                             aGCGTGTTGTAACCCTGACTGTCGAAGCAATCGCTCGCCCGGGCAACGgctggggacgccagtgcgtcattttttgcatgatgccggattctgcccctctgccgatcaaatggtgattatgggtggcccgctaatggg                                                                                                                                  >  1:83374‑M1/1‑48 (MQ=255)
                                                                                                                                                                                             aGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAATGATTACCAACTGTCTGTTGGCTCCCTCTGCCAATGATCTTGGGGAACCACAGga                             >  1:850857/1‑238 (MQ=255)
                                                                                                                                                                                                   ttgtAACCCTGACTGGGGAAGCAATCGCTCGCCCGGGCAACGgctggggacgccagtgcgtcatttattgaatgatgccggattctgcccctctgccgatcaaatggtgattatgggtggcccgctaatgggctttaccttgccatggctggatgtcccggtcgtaaagattaccaactgtctgttggctccctctgccaatgaacttggcgaaccacaggaagaacaaagctgcatcc                       <  1:208495‑M1/239‑198 (MQ=255)
                                                                                                                                                                                                        aCCCTGGCGGGCGAAGCAAACGCTCGGCCGGGCCACGgctggggtcgccagggcgtcatttattgaatggtgccggattctgcccctctgccgatcaaatggtgattatgggtggcccgctaatgggctttaccttgccatggctggatgtcccggtcgtaaagattaccaactgtctgttggctccctctgccaatgaacttggcgaaccacaggaagaacaaagctgcatccggtgt                  <  1:465089‑M1/239‑203 (MQ=255)
                                                                                                                                                                                                            tgccTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCCCGGGTGGGGACGCCAGTGTGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTGCCAATGAACTTGGCGAACCACAGGAAGAACAAAGCTGCATc             <  1:210917/236‑1 (MQ=255)
                                                                                                                                                                                                             gACTGGCGAAGCCAGCCGTCGCCCGGGGAACGgctggggacgccagtgcgtcatttattgaatgatgccggattctgcccctctgccgatcaaatggtgattatgggtggcccgctaatgggctttaccttgccatggctggatgtcccggtcgtaaagattaccaactgtctgttggctccctctgccaatgaacttggcgaaccacaggaagaacaaagctgcatccggtgtagcgc             <  1:82708‑M1/239‑208 (MQ=255)
                                                                                                                                                                                                              aCTGGCGAAGGAATCACTCCCCCGGGTGAAGTCCGGGCACGGCCTGGGCGGACCGTGCGTCAATTATTGTATGATGCCGGTTTCTGCCCCTCTCCCGATCTATTGGTGATTATGGGTGGCCCGCTAATGGGATTTCCCTTTCCATGTCTGGAAGGACCGGCCAGACAGATTCCCCACTGCCTGTCGGCTCCCCTGCCCACTCAACTTGCCAGACCTCAGGAAAAACAAGACTGCCTCCg           >  2:889472/1‑239 (MQ=255)
                                                                                                                                                                                                              aCTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTc                                                                                                                                                                                              <  2:560497/61‑1 (MQ=255)
                                                                                                                                                                                                              aCTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTc                                                                                                                                                                                              >  1:560497/1‑61 (MQ=255)
                                                                                                                                                                                                              aCTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTGCCAATGAACTTGGCGAACCACAGGAAGAACAAAGCTGCATCCg           >  1:272797/1‑239 (MQ=255)
                                                                                                                                                                                                              aCTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGGCCCGGGCGTAAAGATTACCAACTGTCTGTTGGCTCCCCCTGCCACGGACCTTGGCGAACCCAAGGAAGAAAAAAACTCCATCCg           >  2:332258/1‑239 (MQ=255)
                                                                                                                                                                                                                         aaTGGCTCGCCCGGGCAACGTCTGGGCACGGTTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTGCCAATGAACTTGGCGAACCACAGGAAGAACAAAGCTGCATCCGGTGTAgcgc  <  1:584516/237‑1 (MQ=255)
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                          
TAACGATATTTCTCTGCGGGTGATTCCAACCAAATATCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATCCGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCGAGCGTGTTGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCAGTGCGTCATTTATTGAATGATGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGTGGCCCGCTAATGGGCTTTACCTTGCCATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTGCCAATGAACTTGGCGAACCACAGGAAGAACAAAGCTGCATCCGGTGTAGCGC  >  NC_000913/1707611‑1708063

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.