New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1710417	37 (0.510)	3 (0.040)	3/408	NT	7.5%	coding (214/621 nt)	rsxG	SoxR iron‑sulfur cluster reduction factor component; putative membrane protein of electron transport complex
	?	NC_000913	2101749 =	NA (NA)					noncoding (1195/1195 nt)	IS5	repeat region

CCATCGCAAAGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCGGGTTCAACAGGGTTAACTGCGGCCATCAACCAGATGACCAAAACGACGATTGCTGAACAGGCCAGTCTGCAACAAAAGGCGTTATTTGATCAGGTGCTGCCAGCCGAACGCTATAACAATGCGCTGGCACAGAGTTGCTATCTGGTAACTGCGCCAGAGTTAGGTAAAGGTGAGCATCGGGTTTACATCGCCAAACAGGATGACAAACCGGTAGCCGCCGTTCTGGAAGCAACCGCGCCAGATGGCTATTCCGGTGCGATTCAGCTGCTGGTGGGAGCCGATTTTAACGGCACGGTACTTGGCACGCGCGTGACAGAGCACCACGAAACGCCAGGGCTTGGCGATAAAATCGAACTGCGCCTTTCTGACTGGATCACCCATTTTGCGGGTAAAAAAAT  >  NC_000913/1710185‑1710652                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                            ccATCGCAAAGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCGGGTTCAACAGGGTTAACTGCGGCCATCAACCAGATGACCAAAACGACGATTGCTGAACAGGCCAGTCTGCAACAAAAGGCGTTATTTGATCAGGTGCTGCCAGCCGAACGCTATAACAATGCGCTGGCACAGAGTTGCTATCTGGTAACTCCGCCAGAGTTAGggcaag                                                                                                                                                                                                                                       >  1:721599‑M1/1‑233 (MQ=255)         acgggTAAACCATGGTGAAAACTATCCGAAAACCGCGCCTTACGGTGGCGTTTTTTGCGGCGGGTTCAACAGGGTTAACTGCGGCCATCAACCAGATGACCAAAACGACGATTGCTGAACAGGCCAGTCTGCAACAAAAGGCGTTATTTGATCAGGTGCTGCCAGCCGAACGCTATAACAATGCGCTGGCACAGAGTTGCTATCTGGTAACTGCGCCAGAGTTAGGTAAAGGTGAGCAt                                                                                                                                                                                                                               <  2:918843/237‑1 (MQ=255)            ggTAAACCATGCTGAAAACTATCCGAAAACCCGGCATTACGTTGGCGCTATTTGCAGCGGGTTCAACAGGGTTAACTGCGGCCATCAACCAGATGACCAAAACGACGATTGCTGAACAGGCCAGTCTGCAACAAAAGGCGTTATTTGATCAGGTGCTGCCAGCCGAACGCTATAACAATGCGCTGGCACAGAGTTGCTATCTGGTAACTGCGCCAGAGTTAGGTAAAGGTg                                                                                                                                                                                                                                    <  1:817645/231‑1 (MQ=255)                      gCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCGGGTTCAACAGGGTTAACTGCGGCCATCAACCAGATGACCAAAACGACGATTGCTGAACAGGCCAGTCTGCAACAAAAGGCGTTATTTGATCAGGTGCTGCCAGCCGAACGCTATAACAATGCGCTGGCACAGAGTTGCTATCTGGTAACTGCGCCAGAGTTAGGTAAAGGTGAGCATCGGGTTTACATc                                                                                                                                                                                                                   >  1:145707/1‑238 (MQ=255)                      gCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCGGGTTCAACAGGGTTAACTGCGGCCATCAACCAGATGACCAAAACGACGATTGCTGAACAGGCCAGTCTGCAACAAAAGGCGTTATTTGATCAGGTGCTGCCAGCCGAACGCTATAACAATGCGCTGGCACAGAGTTGCTATCTGGTAACTGCGCCAGAGTTAGGCAAAGGTGAGCATCGGGTTTACATc                                                                                                                                                                                                                   >  1:635132/1‑238 (MQ=255)                      gCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCGGGTTCAACAGGGTTAACTGCGGCCATCAACCAGATGACCAAAACGACGATTGCTGAACAGGCCAGTCTGCAACAAAAGGCGTTATTTGATCAGGTGCTGCCACCCGAACGCTATAACAATGCGCTGGCACAGGGTTGCTATCTGGCAACTGCGCACGAGTTAGGAAAAGGTGAGCATCGGGTTTACATc                                                                                                                                                                                                                   >  1:893275/1‑238 (MQ=255)                      gCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCGGGATCAACAGGGTTTACTGCGGCCCTTAACCTGATGACCAAATCGACGATTGCTGAACAGGCCAGGCTGCAGCAAAAGGCGGTAATTGCTCAGGCGCGTCCAGCCGAACGCTGTAACACTTCCCTGGTGCAGAGTTTCCCTCTGGGAACATGGCCACAGTTTGGTAAAGGAGAGCAACGGGTTTaacagc                                                                                                                                                                                                                  >  2:817828/1‑234 (MQ=255)                           aaacgtgcctaaaaCCCGGCATTCGGGTGGCGCGTTTTGCAGCGGTGTCAACAGGGTTAACTGGGGCCATCAACCAGATGACCAAAACGACGATTGCTGAACAGGCCAGTCTGCAACAAAAGGCGTTATTTGATCAGGTGCTGCCAGCCGAACGCTATAACAATGCGCTGGCACAGAGTTGCTATCTGGTAACTGCGCCAGAGTTAGGTAAAGGTGAGCATCGGGTTTACATCGCCaaa                                                                                                                                                                                                             <  2:609379/229‑1 (MQ=255)                              cTATCCGAAAACCCCGCCTTACTTTGGCGCGTTTTCAATCGGGTCCAACAGGGTTAACTGCGGCCATCAACCAGATGACCAAAACGACGATTGCTGAACAGGCCAGTCTGCAACAAAAGGCGTTATTTGATCAGGTGCTGCCAGCCGAACGCTATAACAATGCGCTGGCACAGAGTTGCTATCTGGTAACTGCGCCAGAGTTAGGTAAAGGTGAGCATCGGGTTTACATCGCCAAACAg                                                                                                                                                                                                          <  2:594617/239‑1 (MQ=255)                                                        gcgcTATTTGCAGCGGGTTCAACAGGGTTAACTGCGGCCATCAACCAGATGACCAAAACGACGATTGCTGAACAGGCCAGTCTGCAACAAAAGGCGTTATTTGATCAGTTTCTGCCAGCCGAACGCTATAACAATGCGCTGGCACCGAGTTACTATCTGGTAACTGCGCCCAGGTTAGGTAAAGGGCAGCATCGGGTTTACa                                                                                                                                                                                                                     >  2:614570/1‑202 (MQ=255)                                                        gcgcTATTTGCAGCGGGTTCAACAGGGTTAACTGCGGCCATCAACCAGATGACCAAAACGACGATTGCTGAACAGGCCAGTCTGCAACAAAAGGCGTTATTTGATCAGGTGCTGCCAGCCGAACGCTATAACAATGCGCTGGCACAGAGTTGCTATCTGGTAACTGCGCCAGAGTTAGGTAAAGGTGAGCATCGGGTTTACATCGCCAAACAGGCTGACAAACCGGTAACCGCCGt                                                                                                                                                                                   >  1:1019361/1‑236 (MQ=255)                                                        gcgcTATTTGCAGCGGGTTCAACAGGGTTAACTGCGGCCATCAACCAGATGACCAAAACGACGATTGCTGAACAGGCCAGTCTGCAACAAAAGGCGTTATTTGATCAGGTGCTGCCAGCCGAACGCTATAACAATGCGCTGGCACAGAGTTGCTATCTGGTAACTGCGCCAGAGTTAGGTAAAGGTGAGCATCGGGTTTACATCGCCAAACAGGATGACAAACCGGTAGCCGCCGt                                                                                                                                                                                   >  1:707006/1‑236 (MQ=255)                                                        gcgcTATTTGCAGCGGGTTCAACAGGGTTAACTGCGGCCATCAACCAGATGACCAAAACGACGATTGCTGAACAGGCCAGTCTGCAACAAAAGGCGTTATTTGATCAGGTGCTGCCAGCCGAACGCTATAACAATGCGCTGGCACACAGTTGCTATCTGGAAACTGCGCCAGGGTTAGGTAAAGGTGAGCATCGGGTTTACCTCGCCAAACAGGTTGGAAAAACGGTAGCCGACGttgt                                                                                                                                                                                >  2:305401/1‑237 (MQ=255)                                                                        gTTCAACAGGGTTAACTGCGGCCATCAACCAGATGACCAACACGACGATTGCTGAACAGGCCAGTCTGCAACAAAAGGCGTTATTTGATCAGGTGCTGCCAGCCGAACGCTATAACAATGCGCTGGCACAGAGTTGCTATCTGGTAACTGCGCCAGAGTTAGGTAAAGGTGAGCCTCGGGGTTAAATCGCCAAACAGGAGCGCAAACCGGGAGCCCCCGGTCTGGAAGCAAcgcggcag                                                                                                                                                                >  2:794180/1‑232 (MQ=255)                                                                                      aCTGCGGCCATCAACCAGATGACCAAAACGACGATTGCTGAACAGGCCAGTCTGCAACAAAAGGCGTTATTTGATCAGGTGCTGCCAGCCGAACGCTATAACAATGCGCTGGCACAGAGTTGCTATCTGGTAACTGCGCCAGAGTTAGGTAAAGGTGAGCATCGGGTTTACATCGCCAAACAGGATGACAAACCGGAAGCCGCCGTTCTGGAAGCAACCGCGCCAGATGGCTATTCCgg                                                                                                                                                  >  1:616235/1‑239 (MQ=255)                                                                                           ggCCATCAACCAGATGACCAAAACGACGATTGCTGAACAGGCCAGTCTGCAACAAAAGGCGTTATTTGATCAGGTGCTGCCAGCCGAACGCTATAACAATGCGCTGGCCCAGAGTTGCTATCTGGTAACTGCGCCAGAGTTAGGTAAAGGTGAGCATCGGGTTTACAACGCCAAACAGGATAACAAACCGGTAGCCTCCGTTCTGGAAGCAACGGCGCCAGCTGGCTATTCCgggtcga                                                                                                                                             >  1:195510/1‑234 (MQ=255)                                                                                           ggCCATCAACCAGATGACCAAAACGACGATTGCTGAACAGGCCAGTCTGCAACAAAAGGCGTTATTTGATCAGGTGCTGCCAGCCGAACGCTATAACAATGCGCTGGCACATAGTTGCTATCTGGTAACTGCGCCAGAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgcatcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttga                                                                                                                                              >  1:19346‑M1/1‑143 (MQ=255)                                                                                           ggCCATCAACCAGATGACCAAAACGACGATTGCTGAACAGGCCAGTCTGCAACAAAAGGCGTTATTTGATCAGGTGCTGCCAGCCGAACGCTATAACAATGCGCTGGCACAGAGTTGCTATCTGGTAACTGCGCCAGAGTTAGGTAAAGGTGAGCATCGGGTTTACATCGCCAAACAGGATGACAAACCGGTAGCCGCCGTTCTGGAAGCAACCGCGCCAGATGGCTATTCCGGTGCGa                                                                                                                                             >  1:918517/1‑239 (MQ=255)                                                                                                tCAACCAGATGACCAAAACGACGATTGCTGAACAGGCCAGTCTGCAACAAAAGGCGTTATTTGATCAGGTGCTGCCAGCCGAACGCTATAACAATGCGCTGGCACAGAGTTGCTATCTGGTAACTGCGCCAGCGTTAGGTAAAGGTGAGCATCGGGCTTACATCGCCAAACAGGATGACAAACCGGTAGCCGCCGTTCTGGAAGCAACCGCGCCAGCTGGCTATTCCGGGGCGATCCa                                                                                                                                         >  1:106813/1‑238 (MQ=255)                                                                                                         tGACCAAAACGACGATTGCTGAACAGGCCAGTCTGCAACAAAAGGCGTTATTTGATCAGGTGCTGCCAGCCGAACGCTATAACAATGCGCTGGCACAGAGTTGCTATCTGGTAACTGCGCCAGAGTTAGGTAAAGGTGAGCATCGGGTTTACATCGCCAAACAGGATGACAAACCGGTAGCCGCCGTTCTGGAAGCAACCGCGCCAGATGGCTATTCCGGTGCGATTCAGCTGCtggtg                                                                                                                               >  1:903229/1‑239 (MQ=255)                                                                                                                                   gCCAGTCTGCAACAAAAGGCGTTATTTGATCAGGTGCTGCCAGCCGAACGCTATAACAATGCGCTGGCACAGAGTTGCTATCTGGTAACTGCGCCAGAGTTAGGTAAAGGTGAGCATCGGGTTTACATCGCCAAACAGGATGACAAACCGGTAGCCGCCGTTCTGGAAGCAACCGCGCCAGATGGCTATTCCGGTGCGATTCAGCTGCTGTTGGGAGCCGCTTTTAACGGCACGGTCCt                                                                                                     >  1:222583/1‑239 (MQ=255)                                                                                                                                                  aaGGCGTTATTTGATCAGGTGCTGCCAGCCGAACGCTATAACAATGCGCTGGCACAGAGTTGCTATCTGGTAACTGCGCCAGAGTTAGGTAAAGGTGAGCATCGGGTTTACATCGCCAAACAGGATGACAAACCGGTAGCCGCCGTTCTGGAAGCAACCGCGCCAGATGGCTATTCCGGTGCGATTCAGCTGCTGGTGGGAGCCGATTTTAACGGCACGGTACTTGGCAcccgcgcgcc                                                                                      >  1:391551/1‑235 (MQ=255)                                                                                                                                                    ggCGTTATTTGATCAGGTGCTGCCAGCCGAACGCTATAACAATGCGCTGGCACAGAGTTGCTATCTGGTAGCTGCGCCAGAGTTAGGTAAAGGTGAGCATCGGGTTTACATCGCCAAACAGGATGACAAACCGGTAGCCGCCGTTCTGGAAGCAACCGCGCCAGATGGCTATTCCGGTGCGATTCAGCTGCTGGTGGGAGCCGATTTTAAAGGCACGGGACTTGGCACGCGCGTGACaa                                                                                    >  2:411056/1‑238 (MQ=255)                                                                                                                                                          aTTTGATCAGGTGCTGCCAGCCGAACGCTATAACAATGCGCTGGCACAGAGTTGCTATCTGGTAACTGCGCCAGAGTTAGGTAAAGGTGAGCATCGGGTTTACATCGCCAAACAGGATGACAAACCGGTAGCCGCCGTTCTGGAAGCAACCGCGCCAGATGGCGATTCCGGTGCGCTTCAGCTGCTGGTGGGAGCCGATTTTAACGGCACGGTACTTGGCACCCGCGGGAAAAAGaacc                                                                              >  2:839256/1‑239 (MQ=255)                                                                                                                                                               aTCAGGTGCTGCCAGCCGAACGCTATAACAATGCGCTGGCACAGAGTTGCTATCTGGTAACTGCGCCAGAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctccc                                                                          >  1:331965‑M1/1‑75 (MQ=255)                                                                                                                                                                                        taACAATGCGCTGGCACAGAGTTGCTATCTGGTAACTGCGCCAGAGTTAGGTAAAGGTGAGCATCGGGTTTACATCGCCAAACAGGATGACAAACCGGTAGCCGCCGTTCTGGAAGCAACCGCGCCAGATGGCTATTCCGGTGCGATTCAGCTGCTGGTGGGAGCCGATTTTAACGGCACGGTACTTGGCACGCGCGTGACAGAGCACCACGAAACGCCGGGGCTTGGCGATAAAATCg                                                >  1:358339/1‑239 (MQ=255)                                                                                                                                                                                        taACAATGCGCTGGCACAGAGTTGCTATCTGGTAACTGCGCCAGAGTTAGGTAAAGGTGAGCATCGGGTTTACATCGCCAAACAGGATGACAAACCGGTAGCCGCCGTTCTGGAAGCAACCGCGCCAGATGGCTATTCCGGTGCGATTCAGCTGCTGGTGGGAGCCGATTTTAACGGCACGGTACTTGGCACGCGCGTGACAGAGCACCACGAAACGCCAGGGCTTGGCGATAAAATCg                                                >  1:11764/1‑239 (MQ=255)                                                                                                                                                                                            aatgggtcggCAAAGAGTTGCTATCTGGTAACGGCGCCAGAGTTAGGTAAAGGTGAGCATCGGGTTTACATCGCCAAACAGGATGAAAAACCGGTAGCCGCCGTTCTGGAAGCAACCGCGCCAGATGGCTATTCCGGTGCGATTCAGCTGCTGGTGGGAGCCGATTTTAACGGCACGGTACTTGGCACGCGCGTGACAGAGCACCACGAAACGCCAGGGCTTGGCGATAAAATCGaa                                              <  1:305401/229‑1 (MQ=255)                                                                                                                                                                                              tGCGCTGGCACAGAGTTGCTATCTGGTAACTGCGCCAGAGTTAGGTAAAGGTGAGCATCGGGTTTACATCGCCAAACAGGATGACAAACCGGTAGCCGCCGTTCTGGAAGCAACCGCGCCAGATGGCTATTCCGGTGCGATTCAGCTGCTGGTGGGAGCCGATTTTAACGGCACGGTACTTGGCACGCGCGTGACAGAGCACCACGAAACGCCAGGGCTTGGCGATAAAATCGAACTg                                           >  1:779263/1‑238 (MQ=255)                                                                                                                                                                                               gcgcTGGCACAGAGTTGCTATCTGGTAACTGCGCCAGAGTTAGGTAAAGGTGAGCATCGGGTTTACATCGCCAAACAGGATGACAAACCGGTAGCCGCCGTTCTGGAAGCAACCGCGCCAGATGGCTATTCCGGTGCGATTCAGCTGCTGGGGGTAGCCGATTTTAACGGCCCGGGACTTGGCACTCTCGTGACAGAGCGCCACGAAACGCCAGGGCTTGGCAATAAAATCAAACttg                                          >  1:830859/1‑236 (MQ=255)                                                                                                                                                                                                cgcTGGCACAGAGTTGCTATCTGGTAACTGCGCCAGAGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgccgtaacatttggtccgcccgaaacagggt                                        >  2:440924‑M1/1‑42 (MQ=255)                                                                                                                                                                                                cgcTGGCACAGAGTTGCTATCTGGTAACTGCGCCAGAGTTAGGTAAAGGTGAGCATCGGGTTTACATCGCCAAACAGGATGACAAACCGGTAGCCGCCGTTCTGGAAGCAACCGCGCCAGATGGCTATTCCGGTGCGATTCAGCTGCTGGTGGGAGCCGATTTTAACGGCACGGTACTTGGCACGCGCGTGACAGATCACCACGAAACGCCAGGGCTTGGCGCTAAAATCGAACTgcg                                         >  1:993623/1‑238 (MQ=255)                                                                                                                                                                                                cgcTGGCACAGAGTTGCTATCTGGTAACTGCGCCAGAGTTAGGTAAAGGTGAGCATCGGGTTTACATCGCCAAACAGGATGACAAACCGGTAGCCGCCGTTCTGGAAGCAACCGCGCCAGATGGCTATTCCGGTGCGATTCAGCTGCTGGTGGGAGCCGATTTTAACGGCACGGTACTTGGCACGCGCGTGACAGAGCACCACGAAACGCCAGGGCTTGGCGCTAAAATCGAACTgcg                                         >  1:332783/1‑238 (MQ=255)                                                                                                                                                                                                cgcTGGCACAGAGTTGCTATCTGGTAACTGCGCCAGAGTTAGGTAAAGGTGAGCATCGGGTTTACATCGCCAAACAGGATGACAAACCGGTAGCCGCCGTTCTGGAAGCAACCGCGCCAGATGGCTATTCCGGTGCGATTCAGCTGCTGGTGGGAGCCGATTTTAACGGCACGGGACTTGGCACGCGCGTGGCAGAGCACCACGAAACGCAAGGGGTTGGGGATAAAACCGaaacggg                                         >  2:441768/1‑233 (MQ=255)                                                                                                                                                                                                cgcTGGCACAGAGTTGCTATCTGGTAACTGCGCCAGAGTTAGGTAAAGGTGAGCATCGGGTTTACATCGCCAAACAGGATGACAAACCGGTAGCCGCCGTTCTGGAAGCAACCGCGCCAGATGGCTATTCCGGTGCGATTCAGCTGCGGGTGGGAGCGGATTTTAACGGCACGGGACTTGGCCCGCGCGTGATAGAGCACCACGAAACGCCAGGGCTTGGCGGTaaaaaagaaacgcg                                         >  2:701652/1‑228 (MQ=255)                                                                                                                                                                                                  cTGGCACAGAGTTGCTATCTGGTAACTGCGCCAGAGTTAGGTAAAGGTGAGCATCGGGTTTACATCGCCa                                                                                                                                                                                                               >  2:423910/1‑70 (MQ=255)                                                                                                                                                                                                  cTGGCACAGAGTTGCTATCTGGTAACTGCGCCAGAGTTAGGTAAAGGTGAGCATCGGGTTTACATCGCCa                                                                                                                                                                                                               <  1:423910/70‑1 (MQ=255)                                                                                                                                                                                                  cTGGCACAGAGTTGCTATCTGGTAACTGCGCCAGAGTTAGGTAAAGGTGAGCATCGGGGTTACATCGCCAAACAGGATGCCAAACCGGTAGCCGCCGTTCTGGAAGCAACCGCGCCAGATGGCTATTCCGGTGCGATTCAGCTGCTGTGGGGCGCCGCTTTTAACGGCACGGTAATTGGCAGCGGCGTGCCAGACCACCACGAAACGCACGGGCTTGACGGTAAAATCGAACTTCACCt                                      >  2:728172/1‑239 (MQ=255)                                                                                                                                                                                                               gCTATCTGGTAACTGCGCCAGAGTTAGGTAAAGGCGAGCATCGGGTTTACATCGCCAAACAGGATGACAAACCGGTAGCCGCCGTTCTGGAAGCAACCGCGCCAGATGGCTATTCCGGTGCGATTCAGCTGCTGGTGGGAGCCGATTTTAACGGCACGGTACTTGGCACGCGCGTGCCAGAGCACCACGAAACGCCAGGGCTTGGCGATAAAATCGACCTGCGCCTTTCTGACTGGATc                         >  1:38788/1‑239 (MQ=255)                                                                                                                                                                                                                     tGGTAACTGCGCCAGAGTTAGGTAAAGGTGAGCATCGGGTTTACATCGCCAAACAGGATGACAAGCCGGTAGCCGCCGTTCTGGAAGCAACCGCGCCAGATGGCTATTCCGGTGCGATTCAGCTGCTGGTGGGAGCCGATTTTAACGGCACGGTACTTGGCACGCGCGTGACAGAGCACCACGAAACGCCAGGGCTTGGCGCTAAAATCGAACTGCGCCTTTCTGACTGGCACACCCAt                   >  1:136896/1‑239 (MQ=255)                                                                                                                                                                                                                     tGGTAACTGCGCCAGAGTTAGGTAAAGGTGAGCATCGGGTTTACATCGCCAAACAGGATGACAAACCGGTAGCCGCCGTTCTGGAAGCAACCGCGCCAGATGGCTATTCCGGTGCGATTCAGCTGCTGGTGGGAGCCGATTTTAACGGCACGGTACTTGGCACGCGCGTGACAGAGCACCACGAAACGCCAGGGCTTGGCGATAAAATCGAACTGCGCCTTTCTGACGGGATCAccact                   >  1:522941/1‑236 (MQ=255)                                                                                                                                                                                                                                      ttAGGTAAAGGTGAGCATCGGGTTTACATCGCCAAACAGGATGACAAACCGGTAGCCGCCGTTCTGGAAGCAACCGCGCCAGATGGCTATTCCGGTGCGATTCAGCTGCTGGTGGGAGCCGATTTTAACGGCACGGTACTTGGCACGCGCGTGACAGAGCACCCGGAAACGCCAGGGCTGGGCGGTAAAATCGAACTGCGCCTTCATGACTGGATCACCCATTTTGCGGGTaaaaacag  >  1:827649/1‑236 (MQ=255)                                                                                                                                                                                                                                      ttAGGAAAGGGTGGGCTGCGGGTTTAAAGCGACAAACAGGTGGAAAACCCGGTAGCCGCCGTTCTGGAAGCAACCGCGCCAGATGGCTATTCCGGTGCGATTCAGCTGCTGGTGGGAGCCGATTTTAACGGCACGGTACTTGGCACGCGCGTGACAGAGCACCACGAAACGCCAGGGCTTGGCGATAAAATCGAACTGCGCCTTTCTGACTGGATCACCCATTTTGCGGGTAAAAAAAt  <  1:441768/239‑1 (MQ=255)                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                            CCATCGCAAAGGGTAAACCATGCTGAAAACTATCCGAAAACACGGCATTACGTTGGCGCTATTTGCAGCGGGTTCAACAGGGTTAACTGCGGCCATCAACCAGATGACCAAAACGACGATTGCTGAACAGGCCAGTCTGCAACAAAAGGCGTTATTTGATCAGGTGCTGCCAGCCGAACGCTATAACAATGCGCTGGCACAGAGTTGCTATCTGGTAACTGCGCCAGAGTTAGGTAAAGGTGAGCATCGGGTTTACATCGCCAAACAGGATGACAAACCGGTAGCCGCCGTTCTGGAAGCAACCGCGCCAGATGGCTATTCCGGTGCGATTCAGCTGCTGGTGGGAGCCGATTTTAACGGCACGGTACTTGGCACGCGCGTGACAGAGCACCACGAAACGCCAGGGCTTGGCGATAAAATCGAACTGCGCCTTTCTGACTGGATCACCCATTTTGCGGGTAAAAAAAT  >  NC_000913/1710185‑1710652

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.