| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,173,361 | 0 | C | . | 83.9% | 175.9 / 19.1 | 56 | pseudogene (2/442 nt) | gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| Reads supporting (aligned to +/- strand): ref base C (6/3); new base . (41/6); total (47/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.48e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch. | |||||||||||
| * | NC_000913 | 2,173,362 | 0 | C | . | 84.2% | 173.8 / 16.0 | 56 | pseudogene (1/442 nt) | gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| Reads supporting (aligned to +/- strand): ref base C (5/3); new base . (41/6); total (47/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.13e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch. | |||||||||||
TAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACC > NC_000913/2173127‑2173597 || tAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGAAaccaccgcc > 1:186470/1‑236 (MQ=255) gccgccAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGTTAAAAATCAGGCTTGCCGCTaccaccgccgt > 1:1045686/1‑234 (MQ=255) cAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACAGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACCC‑AAACAG‑CAATTAAAATGGTGAGGGGGTTAAAAATCAGGCTTGCCGAAACCAcgcccgt > 1:1211688/1‑236 (MQ=255) tgtgCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTTCCGAAAC‑‑CCCCGCCGTATGTCCCagcagc > 2:880455/1‑239 (MQ=255) aaTATTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACCCCCGAGTTTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGAt < 1:149893/239‑1 (MQ=255) tGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATAC‑‑CCCCGCCGGTTGTCCCAGCAGCAAGGCCgcgccaagccc > 1:241911/1‑229 (MQ=255) cGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGAAGCAACGCCGGATCAAGGCCa > 1:282561/1‑238 (MQ=255) cgccccACAGGGTGATTCCCATAATGATGACCCCCGAGATTAAGGTGCG‑‑‑‑‑AAACAGATTCCCACGATGACCGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAg < 1:969122/234‑1 (MQ=255) tGATGCTCATAATGATGACACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGAAACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑cc > 1:491165/1‑238 (MQ=255) gATGCTCATAATGATGACACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACCC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCG‑TACC‑CACCGCCGCATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑ccg > 1:871493/1‑238 (MQ=255) gATGCTCATAATGATGACACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGGGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCCGCAAAGCCGGCTCAAGGCCAAACAGGAACCCCTGaaca > 2:879099/1‑235 (MQ=255) aTGCTCATAATGATGACACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑ccgcc > 1:4443/1‑239 (MQ=255) tGCTCATAATGATGACACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTccctgtacctt > 1:142647/1‑230 (MQ=255) tGCTCATAATGATGACACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACCCCTAA‑ccgccg > 1:332718/1‑239 (MQ=255) tGCTCATAATGATGACACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGCATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAAGTCCGTA‑cccccg > 1:236447/1‑239 (MQ=255) aTAATGATGACACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACGG‑CACTTAAAATGGTGCGTGGGCTAAAAATCAGCCTTCCCGA‑ACC‑CCCCGCCGATGGTCCAGGCAGCAAAGCCGGATCGAGGCCAACCAGAAAACCCTAC‑CCCCCGaaat > 2:934915/1‑236 (MQ=255) aTAATGATGACACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTAA‑CCCCCGAACt > 1:328510/1‑238 (MQ=255) aaTGATGACACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTc > 1:250114/1‑238 (MQ=255) tgaCACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGC‑CACAAAACAG‑AAATTAAAATGGTGAGGGGGATAAAAATCAGGCTTCCCGATACCACCC‑‑CCGTATGCCCCAGACGCAAGCCCGAAACAGGACCACT‑ACGAACTCCTAAGCCCCCGACCCTCGCCTga > 2:1238804/1‑238 (MQ=255) gaCACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTa > 1:66222/1‑239 (MQ=255) ccGCGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑CTTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGCGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCCGCAACGCCCGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACg > 1:81862/1‑238 (MQ=255) cG‑‑‑‑‑GAACCGATTTCCACGATGCACGGAGACCGCCCTCGACACGAAGAAGACGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCGCCC‑AAACAG‑CCATTACAATGGAGCGTGGGGTAAAAATCCGGCTTGTCGCTACCA‑‑CCGCCGATTGTCCCAGAGGCAAAGCCGGTTCAAGGCCAATATGGAACTCCTGA‑CCGCCGACATTTGCCTGTACACGACCAcacacctcctt > 2:224773/1‑229 (MQ=255) cG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCCCAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATAC‑‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGCTCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCCCCTGAAAACACCTACGAAccgtcct > 2:1090771/1‑234 (MQ=255) agtttcccACGATCCACGGCGCCCGCCATCGCCACGAAGAAGCCGATGGT‑GGAAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAA‑AAACAG‑CAATTAAAAGGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGAt < 1:1090771/233‑1 (MQ=255) cGACGCGCGGCGCCCGCCCCTCCCAAGAAAAAGCCGACGGTGGGCAGAATCGAGAAACGG‑AGCTCATGAATTCCCCGCCCAAC‑AAACAA‑AATTTAAATGGGGGGGTGGGAAAAAAACCGGGCTGCGCGTTAC‑‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCAAATCCGGAACTCCTGA‑CCGCCGATCTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTa < 2:949782/239‑1 (MQ=255) tGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGC‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGCGAGTGGGATAAAAATCAGGCTTGCCGCAACCA‑‑CCGACGTATGTCCACGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCCCCGAACTCCGCCCGTAAACGACGAAGAGCCGCCTTAGCGAGGGGGGTAAAAca > 2:686013/1‑238 (MQ=255) cACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAcca > 1:1040657/1‑238 (MQ=255) cGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCatg > 1:895065/1‑239 (MQ=255) cGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTaa > 1:281528/1‑239 (MQ=255) cGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCAc > 1:71704/1‑238 (MQ=255) ccGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGGTAAACCATCCAGGATGGGTTTAATAACCCGGGGCAt > 2:981990/1‑239 (MQ=255) ggtggggggCAAGACCGCAAAACGGCAGCCCCGT‑ATTACCCGGCACAA‑AAAAAG‑CAATTAAAATGGGGAGTGGGATAAAAAGCAGGCTTGCCGATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCa < 1:156374/230‑1 (MQ=255) ggt‑ggCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGCTGGGCGTTAAACCATCCATTCTGGGTTTAATCACCCGTGGCATTagca > 1:599567/1‑239 (MQ=255) ccAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCagcagc > 2:93110/1‑102 (MQ=255) ccAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCagcagc < 1:93110/102‑1 (MQ=255) caCCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTAcc > 1:815209/1‑238 (MQ=255) ccTG‑ATTCCCCGGACCAA‑AAAAAC‑AAATAAAAATGGTGGGGGGAAAAAAAATCGGGCTTGCCGA‑ACC‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACCCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGcc < 1:981990/239‑1 (MQ=255) cccGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCACCATCACTGCCGCCGTTTTTACCGCCAGCTGCaa > 1:825902/1‑239 (MQ=255) ggCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCAGGATGGGTTTAATCACCCGTGGCTTTAGCAGCATCACTGCCCCCGTTTTTACCGCCAGCTGCAATac > 1:22748/1‑239 (MQ=255) ggcaaaaaaCAGACAATTAAAAGGGTGGGTGGAATAAAAACCAGTCTGCCCGATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATac < 1:427962/233‑1 (MQ=255) cacac‑aAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTTTAAACGACTACCAGCCTGCTTACCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCTTGGCATTAGCCGCCGCAATGCCCCCATTTTTACCGCCACATGCaaaccc > 2:544156/1‑234 (MQ=255) cacac‑aAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACCGCCGCCGTTTTTACCCCCACCTGCaaacaa > 2:758736/1‑234 (MQ=255) ac‑aAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGCTACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTTA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCtt > 1:1020658/1‑239 (MQ=255) aaaCAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCACCTGCAATACACCTTTg > 1:304835/1‑239 (MQ=255) g‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATa > 1:149089/1‑226 (MQ=255) cAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCg > 1:586175/1‑239 (MQ=255) aTTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACGCCCAGCTGCAATACACCTTTGACATCGTa > 1:797362/1‑239 (MQ=255) aTTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTa > 1:479582/1‑239 (MQ=255) aTTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCCCCGTTTTTACCGCCACCTGCAATACACCTTTGACATCgca > 1:75628/1‑237 (MQ=255) aaTGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAAccc > 1:721231/1‑238 (MQ=255) ggTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGAc > 1:6969/1‑225 (MQ=255) aGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGAt > 1:1023423/1‑239 (MQ=255) aGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGAAGGGCGCTAAACCATCCATGATGGGTTTAATCACCCGTGGAATTACCAGCATCCCTTCCGCCGCTTTTACCGCCAGCCGCAAAACCCCTTTGAAAACGAAACCcccggg > 2:1057523/1‑234 (MQ=255) aGTGGAAAAAAAACCGGGCTTGCCGAT‑CC‑CCCCGCCGTATGTCCCAGAAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGa < 1:879099/238‑1 (MQ=255) tAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGCGGATGCCGCTa > 1:419317/1‑239 (MQ=255) tAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCAAGGATGCCGTTa > 1:413530/1‑239 (MQ=255) aGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCg > 1:162066/1‑111 (MQ=255) gCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATcac > 1:936852/1‑239 (MQ=255) gCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCCAGGATGCCGATAATCAGCCCCATcac > 1:120666/1‑239 (MQ=255) ccccccGCCGTATGCCCCGGCGACAACCCCGGATAAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCCCCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAAcc < 1:263508/237‑1 (MQ=255) || TAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCG‑‑‑‑‑GAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGT‑GGCAAGATCGCCAAACGGCAGCACCTG‑ATTACCCGGCACAC‑AAACAG‑CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGA‑CCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAACC > NC_000913/2173127‑2173597 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |