| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1698341 = | 80 (0.910) | 3 (0.040) | 3/412 | NT | 3.8% | coding (840/1029 nt) | malI | transcriptional repressor of Mal regulon |
| ? | NC_000913 | 1698398 = | 75 (0.890) | coding (783/1029 nt) | malI | transcriptional repressor of Mal regulon | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTTGGGGGCTATTGTGCAACTCTACTAAAATTTGGCCTGCCGTTTCATAGCGATTGGGTGTTGGAGTGCACTTCCAGCCAGAAGCAAGCCGCGGAAGCTATCACGGCGCTTTTACGTCATAACCCGACCATCAGTGCCGTGGTTTGCTATAACGAAACTATTGCGATGGGGGCATGGTTTGGTTTGCTCAAAGCAGGGCGGCAAAGCGGGGAAAGCGGAGTCGATCGTTACTTTGAGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1698580‑1698341‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctttgagcaaACCAAACCATGCCCCCATCGCAATAGTTTCGTTATAGCAAACCACGGCACTGATGGTCGGGTTATGACGTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATC > NC_000913/1698398‑1698629 GTTGGGGGCTATTGTGCAACTCTACTAAAATTTGGCCTGCCGTTTCATAGCGATTGGGTGTTGGAGTGCACTTCCAGCCAGAAGCAAGCCGCGGAAGCTATCACGGCGCTTTTACGTCATAACCCGACCATCAGTGCCGTGGTTTGCTATAACGAAACTATTGCGATGGGGGCATGGTTTGGTTTGCTCAAAGCAGGGCGGCAAAGCGGGGAAAGCGGCGCCGATCGTTACTTTGAGCA > 1:179740/1‑239GTTGGGGGCTATTGTGCAACTCTACTAAAATTTGGCCTGCCGTTTCATAGCGATTGGGTGTTGGAGTGCACTTCCAGCCAGAAGCAAGCCGCGGAAGCTATCACGGCGCTTTTACGTCATAACCCGACCATCAGTGCCGTGGTTTGCTATAACGAAACTATTGCGATGGGGGCATGGTTTGGTTTGCTCAAAGCAGGGCGGCAAAGCGGGGAAAGCGGAGTCGATCGTTACTTTGAGCA > 1:767050/1‑239 TTGGGGGCTATTGTGCAACTCTACTAAAATTTGGCCTGCCGTTTCATAGCGATTGGGTGTTGGTGAGCACATCCAGCCAGCAGCAAGCCGCGGAAGCTATCACGGCGCGTTTACGTCATAACCCGACCAACAGTGCCGTGGTTTGCTTTACAGCAACTTTTTAGTTGGGGGCATGGTTTGGTTTCTTCAAAGCAGTGCGGCAAAGCGGGGAAAGAGGAGTAGATGGTTACTTTGAGCAA > 2:223985/1‑239 GTTTGGTTTGCCCAAAGCAGGGCGGCAAAGCGGGGAAAGCGGAGTCGATCGTTACTTTGAGCAAACCAAACCATGCCCCCATCGCAATAGTTTCGTTATAGCAAACCACGGCACTGATGGTCGGGTTATGACGTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCA < 1:50745/181‑1 CAAAGCGGGGAAAGCGGAGTCGATCGTTACTTTGAGCAAACCAAACCATGCCCCCATCGCAATAGTTTCGTTATAGCAAACCACGGCACTGATGGTCGGGTTATGACGTAAAAGCG < 1:1180644/116‑1 CAAAGCGGGGAAAGCGGAGTCGATCGTTACTTTGAGCAAACCAAACCATGCCCCCATCGCAATAGTTTCGTTATAGCAAACCACGGCACTGATGGTCGGGTTATGACGTAAAAGCG > 2:1180644/1‑116 gGAGCAAACAAAACATGGCCCCCAGCGCAATAGTTTCGTTATAGCAAACCCCGGCCCTGATGGTCGGGTTATGACGTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACACCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATC < 2:112035/238‑1 TGAGAAAACCAAACCATGCCCTCAATGCAATGGTTGCGGTATAGCAAACCACGGCACTGGTTGTGGGGTTAAGAAGTAAAATCGCCGTGATAGCTGCCGGTGATTGCTGCGGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCAAAATAGCCCCCAACCCGGTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGAgc < 2:1068300/239‑3 GTTGGGGGCTATTGTGCAACTCTACTAAAATTTGGCCTGCCGTTTCATAGCGATTGGGTGTTGGAGTGCACTTCCAGCCAGAAGCAAGCCGCGGAAGCTATCACGGCGCTTTTACGTCATAACCCGACCATCAGTGCCGTGGTTTGCTATAACGAAACTATTGCGATGGGGGCATGGTTTGGTTTGCTCAAAGCAGGGCGGCAAAGCGGGGAAAGCGGAGTCGATCGTTACTTTGAGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1698580‑1698341‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctttgagcaaACCAAACCATGCCCCCATCGCAATAGTTTCGTTATAGCAAACCACGGCACTGATGGTCGGGTTATGACGTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATC > NC_000913/1698398‑1698629 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |