| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,006,050 | G→A | 10.6% | intergenic (‑264/‑212) | ygeV ← / → ygeW | putative sigma‑54‑interacting transcriptional activator/putative carbamoyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,006,050 | 0 | G | A | 10.6% | 201.0 / 2.2 | 80 | intergenic (‑264/‑212) | ygeV/ygeW | putative sigma‑54‑interacting transcriptional activator/putative carbamoyltransferase |
| Reads supporting (aligned to +/- strand): ref base G (28/41); new base A (7/2); total (36/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.02e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GATCATTGAAGACGTTGATGGTTCACAGATCATGATGATATTAACTCAGGCGAAATTGGCTTTGATAAAAACATAAGATTTTTATCATTTTCTAATGAAATTATGGAAGAGATATCACATTTCTATATCAATATGAGAATTACGGCGG‑TGAGTTTATCAAACTGAAGAGAGATAGCCTGCCCCTTTATCTTATTTCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAGTGAAATAAACCACTTTGCCTGTCATTCCACTACCGGGACTTTATGATGAAAACTGTTAATGAG > NC_000913/3005817‑3006282 | gATCATTGAAGACGTTGATGGTTCACAGATCATGATGATATTAACTCAGGCGAAATTGGCTTTGATAAAAACATAAGATTTTTATCATTTTCTAATGAAATTATGGAAGAGATATCACATTTCTATATCAATATGAGAATTACGGCGG‑TGAGTTTATCAAACTGAAGAGAGATAGCCTGCCCCTTTATCTTATTTCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCaaa < 1:797640/239‑1 (MQ=255) gTTGATGGTTCACAGATCATGATGATATTAACTCAGGCGAAATTGGCTTTGATAAAAACATAAGATTTTTATCATTTTCTAATGAAATTATGGAAGAGATATCACATTTCTATATCAATATGAGAATTACGGCGG‑TGAGTTTATCAAACTGAAGAGAGATAGACTTCCCCTTTTTCTTATTTCTGATACTTTAC‑AGCAAATAAATAAAGCGATAAAAAAAACCCAAAGGTTTTT‑TAttt > 1:734884/1‑239 (MQ=255) cATGATGATATTAACTCAGGCGAAATTGGCTTTGATAAAAACATAAGATTTTTATCATTTTCTAATGAAATTATGGAAGAGATATCACATTTCTATATCAATATGAGAATTACGGCGG‑TGAGGTTTTCAAAATTAAAAGAGATAGACTGCCCCTTTTTTTTATTTTTTTTACTTTGC‑AGCAAAAAAAAAAAGCGATAAAAAAAACCAAACACTTTTG‑TATTTTTCAAAAAAACaaaaaa > 1:595575/1‑237 (MQ=255) tttttttAACTCAGGTGAAATTGGCTTTGATAAAAACATAAGATTTTTATCATTTTCTAATGAAATTATGGAAGAGATATCACATTTCTATATCAATATGAGAATTACGGCGG‑TGAGTTTATCAAACTGAAGAGAGATAGCCTGCCCATTTATCTTATTTCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCa < 2:1187976/234‑1 (MQ=255) ttAACTCAGGCGAAATTGGCTTTGATAAAAACATAAGATTTTTATCATTTTCTAATGAAATTATGGAAGAGATATCACATTTCTATATCAATATGAGAATTACGGCGG‑TGAGTTTATCAAACTGAAGAGAGATAGCCTGCCCCTTTATCTTATTTCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAAt < 1:1213375/239‑1 (MQ=255) ttAACGCAGGCGAAATTGGCTTTGATAAAAACATAAGATTTTTATCATTTTCTAATGAAATTATGGAAGAGATATCACATTTCTATATCAATATGAGAATTACGGCGG‑TGAGTTTATCAAACTGAAGAGAGATAGCCTGCCCCTTTATCTTATTTCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAAt < 1:1159514/239‑1 (MQ=255) aGGGGAAATTGGTTTTGATAAAAACATAAGATTTTTATCAATTTCGAATGAAATTATGGAAGGGATATCACATTTCTATATCAATATGAGAATTACGGCGG‑TGAGTTTATCAAACTGAAGAGAGATAGCCTGCCCCTTTATCTTATTTCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGAt < 2:143877/239‑1 (MQ=255) gCGAAATTGGCTTTGATAAAAACATAAGATTTTTATCATTTTCTAATGAAATTATGGAAGAGATATCACATTTCTATATCAATATGAGAATTACGGCGG‑TGGGGGTATTAAACTAAATAGAGATAACCCTCCCCCTTATTTTCTTTTTTATATTTTGC‑GACAAAAAAAAAACACCCTAAAAAAAACCACACCATTTTG‑TTTTTTACAAAAAACAAAAAACAGGCAACAAatttttgcaa > 2:659130/1‑232 (MQ=255) gCGAAATTGGCTTTGATAAAAACATAAGATTTTTATCATTTTCTAATGAAATTATGGAAGAGATATCACATTTCTATATCAATATGAGAATTACGGCGG‑TGAGTTTATCAAACTTAAAAAAAATAACCTGCCCCCTTATCTTATTTCTTATACTTAGC‑AGCAAAAAAAAAAACCCATAAAAAAATACAAAAAGTTTCGATATTTT‑CAAAAAAACAACAACTAGCATCAAATtgtgtatt > 1:817156/1‑235 (MQ=255) aTTTTTATCATTTTCTAATGAAATTATGGAAGAGATATCACATTTCTATATCAATATGAGAATTACGGCGG‑TGAGTTTATCAAACTGAAGAGAGATAGCCTGCCCCTTTATCTTATTTCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAAc < 1:81926/213‑1 (MQ=255) ttATCATTTTCTAATGAAATTATGGAAGAGATATCACATTTCTATATCAATATGAGAATTACGGCGG‑TGAGTGTATCAAAATGAAGAGAGAGAGCCTGCCCCTTTATCTTATTTCTGATAATTAAC‑AGCAAATAAAAAACAAGAGAAAAAAAGCCAAAAGATTTCG‑TAATTTTCAAACAACCAGAAACTGGACCTAATTTTTGATTAACCCCACACCATCTCCGCCaaaaaagaatttt > 1:115941/1‑229 (MQ=255) tGAAATTATGGAAGAGATATCACATTTCTATATCAATATGAGAATTACGGCGG‑TGAGTTTATCAAACTTAAGAAAAAAAATATTCCCCTTTTTCTTTTTTTTTATACTTTAA‑AGCAAATAAAAAACGAGATAAAAAAAAACAAAAGTTTTTT‑CATTTTTAAAACAAACACAAGCTACAAACCATTTTTTATAAACCCCCCCAAATAAACGTCCAAATAGTCTTTTTCAGACC‑CCCGGaa > 2:698917/1‑238 (MQ=255) aaGAGATATCCCAGTTCTATATCAATATGAGAATTACGGCGG‑TGAGTTTAGCAAACTGAAGAGAGATAGCCTTCCCCTTTATCTTATTTCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGGCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGca < 1:320353/238‑1 (MQ=255) aaGAGATATCACATTTCTATATCAATATGAGAATTACGGCGG‑TGAGTTTATCAAACTGAAGAGAGATAGCCTGCCCCTTTATCTTATTTCTGATTCTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGca < 1:511895/238‑1 (MQ=255) agaTATCACATTTCTATATCAATATGAGAATTACGGCGG‑TGAGGTTATTAAAATGAAGAGAGATAACCTGCCCCCTTATTTTATTTTTGATAATTTGC‑AGCAAATAAATAAAGCGATAAAAAAAAACAAAAGATTTTG‑TATTTTTCAAACAAACAAAAGCTGGCATCAAATTTTGATCAACACCACACAATTTCCCGCCAATTAATCTTTTTCAGCCGCCGCGG‑TAATTATTGcacc > 1:492888/1‑236 (MQ=255) gaTATCACATTTCCATATCAATATGAAAATTACGGCGG‑TGAGTTTATCAAACTGAAGAGAGATAGCCTGCCCCTTTATCTTATTTCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACt < 1:699485/238‑1 (MQ=255) atCACATTTCTATATCAATATGAGAATTACGGCGGTTGGGGTTTTAAACCTGAATAGA‑AAAGACTGCACCTTTTTTTTTTTTCTGTTTCATATC‑AGCAAAAAAAAAAAGACAGAAAAAAAACCAAAAGTTTTTG‑TATTTTTTAAAAAACCAAAAGATGACATAAAATTTTGATTAAACCCCCACCATATACCACAAAATAATCTTTTTCAGACC‑CACGGAAAAATATTACACACCTAta > 2:628/1‑238 (MQ=255) cccaTTTTTTTTTCAATTTGTGAATTTGGGGGG‑TGATTTTATCAAACTGAAGAGAGATAGCCTGCCCCTTTATCTTATTTCTGATACTTAGA‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGt < 2:595575/237‑1 (MQ=255) cacaGTTCTATATCAATATGAGAATTACGGCGG‑TGAGTTTATCAAACTGAAGAGAGATAGCCTGCCCCTTTATCTTATTTCTGATACTTAGC‑AGCAAATAAATGACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAAccc < 1:128228/177‑1 (MQ=255) aacaagcttattTCAATATGAGAATTTCGGGTG‑TTAGTTTAACAAACTGAAAAAGGATAGCCTGCCCCTTTAACTTATTTCTGATACTTAGC‑AGCAAATAAATAACGCTATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGt < 2:1225798/231‑1 (MQ=255) ttttttatCAATTTTAGAATTTCAGCGT‑TGATTTTATAAAACTGAAAAAAAATAGACTTCCCCTTTAACTTATTTCTTATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTc < 2:1004540/234‑1 (MQ=255) ttCTTTACCAATTTGAGAATTACGGGTG‑TGTATTTATCAAACTGAAGAGAGAAGGCCTGCCCATTTAGCTGATTTTTGATACTTCGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCGTGCATCAATTTGTGATCAACCCAACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTGATTGTTAGTc < 2:817156/239‑1 (MQ=255) ttCTATATCAATATGAGAATTACGGCGG‑TGAGTTTATTAAACTTAAGAGAGATAACCTGCCCCCTTATTTTATTTCTGATAATTAAC‑AGCAAATAAATAACACGCTAAAAAAAACCCAACCGTTTTG‑TATTTTTCAAACAACCAGAAACTGGACTCCACTTTGGATCAAACCCACACATTATCCGTCCAATTAACCTTTTTCTGCCG‑CCCCGGTAATTCTTGTACCCCTATTTTTTGt > 1:139631/1‑238 (MQ=255) cTATATCAATATGAGAATTACGGCGG‑TGAGTTTATCAAACTGAAGAGAGATAGCCTGCCCCTTTATCTTATTTCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTccc < 1:896983/239‑1 (MQ=255) ttACGGGGG‑TGAGTTTATCAAACTGAAGAGAGATAGCCTGCCCCTTTATCTTATTTCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGaaaa < 1:483372/239‑1 (MQ=255) aTCAAACTGAAGAGAGATAGCCTGCCCCTTTATCTTATTTCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGc < 1:659130/239‑1 (MQ=255) aaCTGAAGAGAGATAGCCTGCCCCTTTATCTTATTTCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGt < 1:628/239‑1 (MQ=255) atGAAAAGAAATAACCTTCCCCTTTATTTTATTTTTGATTCTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGTGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑ca < 2:492888/238‑1 (MQ=255) gAAGAGAAATAGCCTGCCCCTTTATCTTATTTCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑caca < 1:480417/239‑1 (MQ=255) aaGAGAGATAGCCTGCCCCTTTATCTTATTTCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAg > 1:3374/1‑239 (MQ=255) aaGAGAGATAGCCTGCCCCTTTATCTTATTTCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAg > 1:301441/1‑239 (MQ=255) agagagATAGCCTGCCCCTTTATCTTATTTCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAg < 1:1174935/238‑1 (MQ=255) aTAGCCTGCCCCTTTATCTTATTTCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAGTGAAATa > 1:204386/1‑239 (MQ=255) gCCTGCCCCTTTATCTTATTTCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGACAACACCAATCACTTTGGCAAGT‑CACAGTGAAATaaa > 1:729763/1‑238 (MQ=255) gCCTGCCCCTTTATCTTATTTCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAGTGAAATAAAc > 1:250124/1‑239 (MQ=255) cttccccTTATTTTTTTTTTTGATACTTACA‑CGCAAAAAAATAACGCGATAAAAAAAGCACAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCTCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAGTGAAATAAACCa < 2:120065/236‑1 (MQ=255) ccccTTTATCTTCTTTCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGTTCACCCCCACACATTATCCGTCAAATTAGCCTTTTGCAGCCG‑CGCGGATCATTCTGGCACACTTATGCTTCTTCCCAGGTATAGCTGTGAAAACCCAAATCACTTTGGCAAGC‑CACAGGGAAAAAAAACACtt > 2:24648/1‑239 (MQ=255) ccccTTTATCTTATTTCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCcg‑c < 2:497616/149‑1 (MQ=255) ccccTTTATCTTATTTCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCcg‑c > 1:497616/1‑149 (MQ=255) ccccTTTATCTTATTTCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAGTGAAATAAACCACtt > 1:789870/1‑239 (MQ=255) ccccTTTATCTTATTTCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAGGGAAATAAACCACtt > 1:1276608/1‑239 (MQ=255) ccccTTTATCTTATTTCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAAAACCAATCACTTTGGCAAGT‑CACAGTGAAATAAACCACtt > 1:385801/1‑239 (MQ=255) ccccTTTATCTTATTTCTGATACTTAGA‑AGCAAATAAATAGCGCGATATAAAAAGCCAAACGTTTTCG‑TCTTTCACAAACAACCAGACGCTGGCATCAATTTGTGATCAACCCAACACATTATCCGTCAACTTAGACTTTTGCAGCCG‑CGCGGATAATCCTGGCACACTTCTTGTTAGTCCCAGGTATAGCTGGGAAAAAACCAATCACTTTGTAAAGA‑CAAAGTGAaaaaaaaaaata > 2:1058872/1‑233 (MQ=255) cccTTTATCTTATTTCTGATACTTAGA‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAGTGAAATAAACCACttt < 1:657214/239‑1 (MQ=255) cTTTATCTTATTTCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAAGTTGTGATCAACCCCACTCATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAg < 1:1155703/221‑1 (MQ=255) tttATCTTATTTCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAGTGAAATAAACCACTTTGcc < 1:856942/239‑1 (MQ=255) tATCTTATTTCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAAACCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGTGACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAAAACCAATCACTTTTGAAAGT‑CACAGTGAAAAAAACCACATTGCCTg > 2:861991/1‑239 (MQ=255) tttttATTTTTTATACTTAAA‑AGGAAATAAATAGCGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTAAAAAAAAACAGAAAGTGGCATCAACTTGTGATCCACCCCACCCATTATCCGTCAAATTAGGCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAGTGAAATAAACCACTTTGCCTGt < 2:1064616/236‑1 (MQ=255) tttctATTTTTGATTCTTAGCAAGAAAATAAA‑AACCGGATAAAAAAAGCCAAACGGTTTCC‑TTTTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGTCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAGTGAAATAAACCACTTTGCCTGt < 2:1214993/235‑1 (MQ=255) aTCTTATTTCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAGTGAAATAAACCACTTTGCCTGt < 1:673260/239‑1 (MQ=255) tttCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAGTGAAATAAACCACTTTGCCTGTCATTcc > 1:1019549/1‑239 (MQ=255) tttCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAGTGAAATAAACCACTTTGCCTGTCATTc > 1:764973/1‑238 (MQ=255) tttCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGCCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAGTGAAATAAACCACTTTGCCTGTCATTc > 1:71270/1‑238 (MQ=255) tttCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACAAGAAGCTGGCATCAATTTGTGATCAACACCACACATTATCCGTCAAATTAGCCTTTTGCAGCCG‑CGCGGATACTTCTGGCACACTTATTGTTATTCCCAGGCATACTTTTGAAAAAACCAATAACTTTGGCAAGTACACA‑TGAAAAAAAACCATTTGCCttcaattcc > 2:314003/1‑231 (MQ=255) ttCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAGTGAAATAAACCACTTTGCCTGTCATTCCa < 1:861991/239‑1 (MQ=255) tatatttgac‑agtaAATAAGTAACGCGATAAAAAAACCCAAAGCTCTTCG‑TATTTAACCACAAACGCGAAGGTGACATCAATTTGGGATCAACCCGACTCATTATCCGTCAAAGTAGGCGTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCCCTTTGGCAAGT‑CACAGTGAAATAAACCACTTTGCATGTCATTCCACttc < 2:17067/230‑3 (MQ=255) gATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGCCAAGT‑CACATTGAAATAAACCACTTTGCCTGACATTCCACTa > 1:567802/1‑238 (MQ=255) agc‑agcAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAGTGAAATAAACCACTTTGCCTGTCATTCCACTACCGGGCCt > 1:987750/1‑239 (MQ=255) agc‑agcAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGACG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CCCAGTGAAATAAACCACTTTGACTGTCATTCCACAACCGGGACt > 2:1284585/1‑239 (MQ=255) catcaAAAAAAAAAAGCGATAAAAAAAGACAAACGTTTTCG‑TATTTTCCAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAGTTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGGCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAGTGAAATAAACCACTTTGCCTGTCATTCCACTACCGGGACttt < 2:1019549/236‑1 (MQ=255) caAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAGTg < 1:1288129/196‑1 (MQ=255) aataaataACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCAGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGAAACCTTATTGTTAGTCCAAGTGTTAGCTGTGAAAAAACAAATCACTTTGGCAAGT‑ACCAAGGAATTAAAACACTTTGCCAGTAATTCCACACCCGGGACTTTatgat > 2:1001705/1‑239 (MQ=255) aaataaCGCAATAAAAAAAGCCAAACGTTTTCC‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAGTGAAATAAACCACTTTGCCTGTCATTCCACTACCGGGACTTTATGATGaa < 1:158607/239‑1 (MQ=255) aCGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATaa < 2:13904/117‑1 (MQ=255) aCGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATaa > 1:13904/1‑117 (MQ=255) aCGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAGTGAAATAAACCACTTTGCCTGTCATTCCACTACCGGGACTTTATGATGaaa > 1:266681/1‑235 (MQ=255) cgcgATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAGTGAAATAAACCACTTTGCCTGTCATTCCACTACCGGGACTTTATGATGAAAACTGt > 1:750636/1‑239 (MQ=255) cgcgATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAAAACCAATCACTTTGGCAAGT‑CACAGTGAAATAAACCACTTTGCCTGTCATTCCACTACCGGGACTTTATTATGaaaaaagt > 2:718821/1‑235 (MQ=255) cgttAAAAAAAACCAACTTGTTTCT‑AATTTTACAATCAGCCAGAAGCTGGCATGAATGTGTGATCAACACCACTCATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAGTGAAATAAACCACTTTGCCTGTCATTCCACTACCGAGACTTTATGATGAAAACTGTTa < 2:385801/236‑1 (MQ=255) cgATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCAACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACAAATCACTTTGGCAAGT‑CACAGTGAAATAAACAACTTTGCCCGTCTTTCCAACACCGGGCATTTCAGATAaaaaacttta > 2:837885/1‑233 (MQ=255) aTAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGTCAATTCTGGCACACTTATTGTTAGTCCCAGGTATACCTTTGAAAACACCACTACCTTTGGCCAGT‑CCCAGGGAAATAAACCACTTTACCTGTCATTCCCCTCCCCGGCCTTTAATAAAAAAACTGTAAAt > 2:283546/1‑239 (MQ=255) aTAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAGTGAAATAAACCACTTTGCCTGTCATTCCACTACCGGGACTTTATGATGAAAACTGTTAAt > 1:795246/1‑239 (MQ=255) aaaaaaGCCATATGTTTTCG‑TATTTTACAAACAAACAGAAGCTGGCATCAATTTGTGATCAACCCCACTCATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTAGTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGG‑CACAGTGAAATAAACCACTTTGCCTGTCATTCCACTACCGGGACTTTATGATGAAAACTGTTAATGAg < 2:764973/239‑1 (MQ=255) aaaaaaGCCAAACGTTTTCG‑TTTTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAGTGAAATAAACCACTTTGCCTGTCATTCCACTACCGGGACTTTATGATGAAAACTGTTAATGAg < 1:1114494/239‑1 (MQ=255) aaaaaaGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAGTGAAATAAACCACTTTGCCTGTCATTCCACTACCGGGACTTTATGATGAAAACTGTTAATGAg < 1:837885/239‑1 (MQ=255) aaaaaaGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAGTGAAATAAACCACTTTGCCTGTCATTCCACTACCGGGACTTTATGATGAAAACTGTTAATGAg < 1:328755/239‑1 (MQ=255) aaaaaaGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAGTGAAATAAACCACTTTGCCTGTCATTCCACTACCGGGACTTTATGATGAAAACTGTTAATGAg < 1:718821/239‑1 (MQ=255) aaaaaaGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAGTGAAATAAACCACTTTGCCTGTCATTCCACTACCGGGACTTTATGATGAAAACTGTTAATGAg < 1:698917/239‑1 (MQ=255) aaaaaaGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAGTGAAATAAACCACTTTGCCTGTCATTCCACTACCGGGACTTTATGATGAAAACTGTTAATGAg < 1:1058872/239‑1 (MQ=255) aaaaaaACCAAACTTTTTCG‑TTTTTTACAAACAACCAGACGTTGGCAACAATTTGGGCACAAACCAACACTGTATCCGTCAAAGTAGTCTGTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAGTGAAATAAACCACTTTGCCTGTCATTCCACTACCGGCACTTTATGATGAAAACTGTTAATGAg < 2:734884/239‑1 (MQ=255) | GATCATTGAAGACGTTGATGGTTCACAGATCATGATGATATTAACTCAGGCGAAATTGGCTTTGATAAAAACATAAGATTTTTATCATTTTCTAATGAAATTATGGAAGAGATATCACATTTCTATATCAATATGAGAATTACGGCGG‑TGAGTTTATCAAACTGAAGAGAGATAGCCTGCCCCTTTATCTTATTTCTGATACTTAGC‑AGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCG‑TATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAACCCCACACATTATCCGTCAAATTAGTCTTTTGCAGCCG‑CGCGGATAATTCTGGCACACTTATTGTTAGTCCCAGGTATAGCTGTGAAAACACCAATCACTTTGGCAAGT‑CACAGTGAAATAAACCACTTTGCCTGTCATTCCACTACCGGGACTTTATGATGAAAACTGTTAATGAG > NC_000913/3005817‑3006282 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |