| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,296,181 | A→T | 11.3% | I125F (ATT→TTT) | diaA → | DnaA initiator‑associating factor for replication initiation |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,296,181 | 0 | A | T | 11.3% | 206.4 / 4.5 | 81 | I125F (ATT→TTT) | diaA | DnaA initiator‑associating factor for replication initiation |
| Reads supporting (aligned to +/- strand): ref base A (53/17); new base T (2/8); total (55/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.05e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTAATGGAACTTCCGCTGCCAATGCACAGCATTTTGCTGCCAGCATGATCAACCGTTTCGAAACGGAGCGGCCCAGCTTACCTGCCATTGCACTAAATACTGATAATGTTGTCTTAACGGCGATTGCCAACGATCGCTTACATGATGAAGTGTATGCAAAACA‑GGTGCGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTAGTGCTCGCATTCAGGAAATGCATATGCTGACGGTAAATTGCCTGTGCG‑ATCTGATCG‑AT‑AACACGCTTTTCCCTCACCAGGATGATTAAGGAGAATACAT > NC_000913/3295951‑3296410 | gTAATGGAACTTCCGCTGCCAATGCACAGCATTTTGCTGCCAGCATGATCAACCGTTTCGAAACGGAGCGGCCCAGCTTACCTGCCATTGCACTAAATACTGATAATGTTGTCTTAACGGCGATTGCCAACGATCGCTTACATGATGAAGTGTATGCAAAACA‑GGTGCGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTaaa > 1:1280249/1‑239 (MQ=255) aTGGAACTTCCGCTGCCAATGCACAGCATTTTGCTGCCAGCATGATCAACCGTTTCGAAACGGAGCGGCCCAGCTTACCTGCCATTGCACTAAATACTGATAATGTTGTCTTAACGGCGATTGCCAACGATCGCTTACATGATGAAGTGTATGCAAAACA‑GGTGCGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCa > 1:1283393/1‑239 (MQ=255) aCTTCCGCTGCCAATGCACAGCATTTTGCTGCCAGCATGATCAACCGTTTCGAAACGGAGCGGCCCAGCTTACCTGCCATTGCACTAAATACTGATAATGTTGTCTTAACGGCGATTGCCAACGATCGCTTACATGATGAAGTGTATGCAAAACC‑GGTGCGGGCGCTGGGTCATTCGGGAG‑AGGAATTTTTAGCCATTTCCACCCAGGGCAACAACCGCGCAATTGTTAAATAAGttta > 2:281224/1‑237 (MQ=255) ccGCTGCCAATGCACAGCATTTTGCTGCCAGCATGAACAACCGTTTCAAAACGGAGCGGCCCAGTTTACCTGCCATTGCACTAAATACTGATAATGTTGTCTTAACGGCGATTGCCAACGATCGCTTACATGATGAAGTTTATGCAAAACA‑GGGGCGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAgcc < 1:618928/239‑1 (MQ=255) tGCACAGCATTTTGCTGCCAGCATGATCAACCGTTTCGAAACGGAGCGGCCCAGCTTACCTGCCATTGCACTAAATACTGATAATGTTGTCTTAACGGCGATTGCCAACGATCGCTTACATGATGAAGTGTATGCAAAACA‑GGTGCGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTAcgc > 1:687825/1‑239 (MQ=255) gCATTTTGCTGCCAGCATGATCAACCGTTTCGAAACGGAGCGGCCCAGCTTACCTGCCATTGCACTAAATACTGATAATGTTGTCTTAACGGCGATTGCCAACGATCGCTTACATGATGAAGTGTATGCAAAACA‑GGTGCGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACGACCGCGATATTGTTAAAGCAGTTGAAGCCGCCGGTACGCGTGata > 1:1152909/1‑239 (MQ=255) gCATTTTGCTGCCAGCATGATCAACCGTTTCGAAACGGAGCGGCCCAGCTTACCTGCCATTGCACTAAATACTGATAATGTTGTCTTAACGGCGATTGCCAACGATCGCTTACATGATGAAGTGTATGCAAAACA‑GGTGCGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATTTTGTTAAAGGAGTTGAAGCCGCCGTTAGCCGTGata > 1:1176206/1‑239 (MQ=255) tgctgcCAGCATGATCAACCGTTTCGAAACGGAGCGGCCCAGCTTACCTGCCATTGCACTAAATACTGATAATGTTGTCTTAACGGCGATTGCCAACGATCGCTTACATGATGAAGGGTATGCAAAAAA‑GGTGCGGGCCCTGGGTCTTCCGGGAG‑ATGTATTGTTAGCCCTTTCCCCCCGTGGCAAAAGCGCCGATATTGTTAAAGCAGTTAAAGCCCCCGTTACGCGTGaaaggaaac > 2:712507/1‑231 (MQ=255) ccAGCATGATCAACCGTTTCGAAACGGAGCGGCCCAGCTTACCTGCCATTGCACTAAATACTGACAATGTTGTCTTAACGGCGATTGCCAACGATCGCTTACATGATGAAGTGTATGCAAAACA‑GGTGCGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCAtgttg > 1:201455/1‑235 (MQ=255) cAGCATGATCAACCGTTTAGAAACGAAACGGCCTAGCTTACCTGCCATTGCACTAACTACTGATACTGTTGTCTTAACGGCGATTGCCAACGATCGCTAACAAGATGAAGTGTATGCAAAAAA‑GGTGCGGGCGCTGGGTCATTCGGGAG‑AAGTATTGCTAGCCATTTCCACCCGTGGAAAAAGACGCGAGTTTGTTAAAGCAGTTGAAGCAGACGTTACGCGTGATATGACCATTGTgg > 1:627557/1‑239 (MQ=255) cATGATCAACCGTTTCGAAACGGAGCGGCCCAGCTTACCTGCCATTGCACTAAATACTGATAATGTTGTCTTAACGGCGATTGCCAACGATCGCTTACATGATGAAGTGTATGCAAAACA‑GGTGCGGGCGCTGGGTCATGCGGGGG‑ATGTATTGTTAGCCATTTCCACCCGTGGCCACAGCCGCGATATTGTTAAAGCAGTTGAAGCCCCCGTTACGCGTGCTATGGCCATTGTGGcct > 1:44177/1‑237 (MQ=255) cAACCGTTTCGAAACGGAGCGGCCCAGCTTACCTGCCATTGCACTAAATACTGATAATGTTGTCTTAACGGCGATTGCCAACGATCGCTTACATGATGAAGTGTATGCAAAACA‑GGTGCGGGCGCTGGGTCATGCGGGAG‑ATGTTTTGTTAGCCATTTCCACCCGTGGCAAACACCGCGATATTGTGAAACAAGTTTAAACCCCCGTTAGCCCTGATATGACCATTAGTGCATGGACCg > 2:808818/1‑239 (MQ=255) aCCGTTTCGAAACGGAGCGGCCCAGCTTACCTGCCATTGCACTAAATACTGATAATGTTGTCTTAACGGCGATTGCCAACGATCGCTTACATGATGAAGTGTATGCAAAACA‑GGTGCGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGGGATTTGCCCATTGTGGCATTGACCg > 1:499186/1‑237 (MQ=255) tttCGAAACGGAGCGGCCCAGCTTACCTGCCATTGCACTAAATACTGATAATGTTGTCTTAACGGCGATTGCCAACGATCGCTTACATGATGAAGTGTATGCAAAACA‑GGTGCGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGAAATGACCATTGTGGCTTTGACCGGcattg > 1:313874/1‑235 (MQ=255) aaaCGGAGCGGCCCAGCTTACCTGCCATTGCACTAAATACTGATAATGTTGTCTTAACGGCGATTGCCAACGATCGCTTACATGATGAAGTGTATGCAAAACA‑GGTGCGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGAAATGACCATTGTGGCATTGACCGGCTATGAcggc > 1:349590/1‑239 (MQ=255) cccTGCCATTGGACTAAATCCTGAAAATGTTGTCTTAACGGCGATTGCCAACGATGGCTTACATGATGAAGTGTATGCAAAACA‑GGTGCGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCCCCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGt < 1:281429/238‑1 (MQ=255) cTGCCATTGCACTAAATACTGATAATGTTGTCTTAACGGCGATTGCCAACGATCGCTTACATGATGAAGTGTATGCAAAACA‑GGTGCGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGGGTGAAATCACCCTTGGGGCCTTGACCGGCTATGCATGCGGCGAACTT‑GCCGGTTTGTTa > 1:602112/1‑239 (MQ=255) ttGAACTAAATCCTAAAAGTGTGGGCTTAACGGCGTTTGCCAACGATCGTTAAAATGATGAGTGGTATG‑AAAACAGGGGGGGGGGGCGGGGTCAGGGGGGAG‑ATTTTTTGTTAGCAATTCCCCCCCGTGGCAACAGCCGCGATATTTTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCca < 1:1290990/239‑1 (MQ=255) aaTACTGATAATGTTGTCTTAACGGCGATTGCCAACGCTCGCTTACATGATGAAGTGTATGCAACACA‑GGTGCGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAATCAGTTGAAGCCGCCGTTACGCGTTATCTGCCCCTTGTGGCATTGACCGGCTATGACGCCGGCAGACAT‑ACAGGTTTGTTAGGGCcaccagaatg > 2:574239/1‑232 (MQ=255) tGATAATGTTGTCTTAACGGCGATTGCCAACGATCGCTTACATGATGAAGTGTATGCAAAACA‑GGTTCGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGGTATTGTTCAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTTACCAGTTTTGTTAGGCCCAAAggtgtgtggt > 2:626960/1‑231 (MQ=255) gATAATGTTGTCTTAACGGCGATTGCCAACGATCGCTTACATGATGAAGTGTATGCAAAACA‑GGTGCGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGgaga > 1:505352/1‑238 (MQ=255) aTAATGTTGTCTTAACGGCGATTGCCAACGATCGCTTACATGATGAAGTGTATGCAAAACA‑GGTGCGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGGGAt > 1:868867/1‑238 (MQ=255) aTAATGTTGTCTTAACGGCGATTGCCAACGATCGCTTACATGATGAAGTGTATGCAAAACA‑GGTGCGGGCGCTGGGACATCCGGGAG‑ATGTATTGTTAGACATTTCCACACGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCAGCCGTTACGCGTGACATGACCATTGATGCCATGACAGGCAAAGACGGGGGCGAAGTT‑GCCGGTTTGTTAAGGCCACAGGAGGGGGAGGTc > 2:179269/1‑239 (MQ=255) aTAATGTTGTCTTAACGGCGATTGCCAACGATCGCATACATGATGAAGTGTATGCAAAACA‑GGTGCGGGCGCTGGGGCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGCGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGCCCCCAGGCTGTGGAGAt > 1:112285/1‑238 (MQ=255) tAATGTTGTCTTAACGGCGATTGCCAACGATCGCTTAAATGATGAAGTGGATGCAAAACA‑GGGGCGGGCGCTGGGGCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCATACGACGAGCGATTGTTAAAGCAGTGTAAGCCGCCGTTACGCGTGATATTCCCATTTTGGCATTGACGGGCTAGGACGGCGGCGACATT‑GGCGGATTCGTGGGGCCACCGGATCTGGGAATcc > 2:40688/1‑239 (MQ=255) gttgtCTTAACGGCGATTGCCAACGATCGCTTACATGATGAAGTGTATGCAAAACA‑GGTGCGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCACGATTGTTAGGGCCACAGGATGTGGAGATCCGCAt > 1:77504/1‑239 (MQ=255) gtCTTAACGGCGATTGCCAACGATCGCTTACATGATGAAGTGTATGCAAAACA‑GGTGCGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTAcgc > 1:386190/1‑151 (MQ=255) gtCTTAACGGCGATTGCCAACGATCGCTTACATGATGAAGTGTATGCAAAACA‑GGTGCGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATtgtg > 1:857790/1‑168 (MQ=255) gtCTTAACGGCGATTGCCAACGATCGCTTACATGATGAAGTGTATGCAAAACA‑GGTGCGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGGGATCCGCAtt > 1:845469/1‑237 (MQ=255) aCGGCGATTGCCAACGATCGCTTACATGATGAAGTGTATGCAAAACA‑GGTGCGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCa > 1:293373/1‑239 (MQ=255) gATTGCCAACGATCGCTTACATGATGAAGTGTATGCAAAACA‑GGTGCGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTa > 1:894378/1‑239 (MQ=255) gATTGCCAACGATCGCTTACATGATGAAGTGTATGCAAAACA‑GGTGCGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTa > 1:391488/1‑239 (MQ=255) gATTGCCAACGATCGCTTACATGATGAAGTGTATGCAAAACA‑GGTGCGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTa > 1:546838/1‑239 (MQ=255) gATCGCTCAAATGATGAATTGTATAAAAACCG‑GGAGCGGGCGTTGGGTCATGGGGGAG‑ATTTATGTTTACCCTTTCCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTAcg < 2:1235645/129‑1 (MQ=255) ttACATGATGAAGTGTATGCAAAACG‑GGGGGGGGCGCTGGGTCATGGGGGAG‑ATGTATTGGTAGCCATTCCCCCCCGGGGCAACAGCCGGGATATTGTAAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTAGTGCTCGCATTCAGGa < 1:281224/239‑1 (MQ=255) tagttgaggaAGTGTAGGCAAAAGG‑GGGGTGGGTGGGGGGTGATG‑GGGAGTATTTATTGTATGCCATTTCCCCCGGTGGAACCCGCCGCGATTTTGATAAAGCGTTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTAGTGCTCGCATTCAGGa < 2:894378/234‑1 (MQ=255) aCATGATGAAGTGTAGGAAAAAGA‑GGTGGGGGGGGTGGGTCATGCGGGAG‑ATGTTTTGTTAGCCATTCCCACCCGGGGCAACAGCCGCGATTTTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTAGTGCTCGCATTCAGGaaa < 1:712507/239‑1 (MQ=255) atgatgAAGTGTATGCAAAACA‑GGTGCGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGa > 1:1235645/1‑129 (MQ=255) aaGTGTATGCAAAACA‑GGTGCGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGGGAACTT‑GCAGGTTTGTTAGGGCCCCAGGGTGGTGAGATCCGCCTT‑‑CCTTCCCCACGTGATGGTCCCAATCAGGaaaagaaaatg > 2:711660/1‑231 (MQ=255) gtATGCAAAACA‑GGTGCGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGCGATCCGCATT‑‑CCTTCGCATCGTAGTGCTCGCATTCAGGAAATGCATATGCTg > 1:25506/1‑238 (MQ=255) taggaaaaaCG‑GGTGGGGGCGCTGGGTCATGCGGGAG‑TTGTATTGTTAGCATTTTCCCCCGGGGGCAACAGCCGCGATATTGTAAAGGCAGTTGAGGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTAGTGCTCGCATTCAGGAAATGCATATGCTGAc < 1:7286/234‑1 (MQ=255) aTGCAAAAGAGGGGGCGGGGGCTGGTTCATGGGGGAG‑TTTTTTTGTTAGCCATTTCCCCCGGTGGCAACAGCCGCAATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTAGTGCTCGCATTCAGGAAATGCATATGCTGAc < 1:1131102/239‑1 (MQ=255) tGCAAAACG‑GGTGGGGGGGCGGGGTCATGGGGGAG‑ATGTATTGTTAGCCTTTTCCCCCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGga < 1:1265447/183‑1 (MQ=255) gCAAAACA‑GGTGCGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTAGTGCTCGCATTCAGGAAATGCATATGCTGACGGt > 1:1218288/1‑239 (MQ=255) aaCA‑GGTGCGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑c > 1:1117097/1‑189 (MQ=255) aaCA‑GGTGCGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTAGTGCTCGCATTCAGGAAATGCATATGCTGACGGTAAAt > 1:444096/1‑239 (MQ=255) aaCA‑GGTGCGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTAGGGCTCGCATTCAGGAAATGCCTATGCTGACGGTAAAt > 1:261978/1‑239 (MQ=255) aacgggggggggCGGTGGGTAGTGCGGGAG‑ATGGATTGTAAGCATTTCCCACCGGGGGAACCGGCCGCGATATTGTTAAAGCATTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTAGTGCTCGCATTCAGGAAATGCATATGCTGACGGTAAAt < 1:417396/230‑1 (MQ=255) aCA‑GGTGCGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTAGTGCTCGCATTCAGGAAATGCATATGCTGACGGTAAAt > 1:1213183/1‑238 (MQ=255) cGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTTTTAGGGACAAAGGTTGGGGAGATCGGCATT‑‑CCTTCGCTCCGTGGGGCTCGCTTTCCGGAAGGGAATATCCGAACGGTAAATTGccgtgg > 2:902268/1‑235 (MQ=255) ggggggtGGGTCAGGGGGGAG‑TTGATTTGTTAGCCTTTTCCCCCCGGGGAAACAGCCGTATTATTTTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTAGTGCTCGCATTCAGGAAATGCATATGCTGACGGTAAATTGCCtgtg < 1:342456/232‑1 (MQ=255) ggcgtcTGGGTCATGGGGGAG‑ATGTATTGTGAGCCATTCCCCCCCGTGGCAACAGCCGGGATATTGTTAAGGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTAGTGCTCGCATTCAGGAAATGCATATGCTGACGGTAAATTGCCtgtg < 1:264608/233‑1 (MQ=255) ggCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGCGATCCGCATTCCCCTTCGCGTGGTAGTGCGCGCATTCAGGAAAAGCATATGCTGACGGGAAATTGCCtgtg > 2:116717/1‑239 (MQ=255) ggCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTAGTGCTCGCATTCAGGAAATGCATATGCTGACGGTAAATTGCCTGTGCg > 1:762997/1‑239 (MQ=255) cgtgtGGTTCATGGGGGAG‑ATTTATTTTTACCCTTTCCCCCCCGTGGCAACAGCCGGGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTAGTGCTCGCATTCAGGAAATGCATATGCTGACGGTAAATTGCCTGTGCg < 1:225113/234‑1 (MQ=255) cgcTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGGGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAggg > 1:781296/1‑152 (MQ=255) ggTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCAGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACAATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGGTATCCGCAGT‑‑CCTTCGGAGCGGAGCGCTCGCATTACGGAAATGCCTATCCTGACGGTAAATTGCCtggtggatttgat > 2:264608/1‑228 (MQ=255) aTGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTAGTGCTCGCATTCAGGAAATGCATATGCTGACGGTAAATTGCCTGTGCG‑ATCTGATCG‑At > 1:32176/1‑239 (MQ=255) tGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTAGTGCTCGCATTCAGGAAATGCATATGCTGACGGTAAATTGCCTGTGCG‑ATCTGATCG‑AT‑a > 1:885957/1‑239 (MQ=255) ag‑aTGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGCGATCCGCATT‑‑CCTTCGCATCGTAGTGCTCGCATTCAGGAAATGCATATGCTGACGGTAAATTGCCTGTGCG‑ATCTGATCG‑AT‑Aacac > 1:1209967/1‑237 (MQ=255) tttGTTAGTCCTCTCCACCCGGGGCACCATCGGGGATTTTGTTAAAGCGTTTAAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTAGGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTAGTGCTCGCATTCAGGAAATGCATATGCTGACGGTAAATTGCCTGTGCG‑ATCTGATCG‑AT‑AACACGCTTTTcc < 2:1218288/238‑1 (MQ=255) ttAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTAGTGCTCGCATTCAGGAAATGCATATGCTGACGGTAAATTGCCTGTTCG‑ATCTGATCG‑AT‑AACACGCTTTTCCCTc > 1:726657/1‑238 (MQ=255) aGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGga > 1:352929/1‑138 (MQ=255) aGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTAGTGCTCGCATTCAGGAAATGCATATGCTGACGGTAAATTGCCTGTGCG‑ATCTGATCG‑AT‑AACACGCTTTTCCCTAAcc > 1:207610/1‑239 (MQ=255) aGCCATTTCCACCCGTGCCAACAGCCGCGCTATTGTTACAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGCCGGCGGCGGACTT‑GCAGGTTTGTTAGGGCCACAGGATTTGGGGATCCGCATT‑‑CCTTCGCTCCGTAGTTCCCGCATTCAGGAAATGCATATGCTGCCGGAAAATTCCCTCTCCG‑ATCTTGTCGAAA‑AACAC‑CTTTTCCCCCAcc > 2:884000/1‑239 (MQ=255) ccccttcccccccGTGGCAACGGGCGATATTTTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATTCCCCTTCGCATCGTAGTGCTCGCATTCAGGAAATGCATATGCTGACGGTAAATTGCCTGTGCG‑ATCTGATCG‑AT‑AACACGCTTTTCCCTCAc < 1:116717/229‑1 (MQ=255) ccATTCCCCGCCGTGGAAACAGCCGGGATATTGTAAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTAGTGCTCGCATTCAGGAAATGCATATGCTGACGGTAAATTGCCTGTGCG‑ATCTGATCG‑AT‑AACACGCTTTTCCCTCACCAg < 1:751959/239‑1 (MQ=255) taTTCCCACCCGTGGCAACCGCCGTGAATTTGTTAAAGCAGTTGAAGCCGGCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTAGTGCTCGCATTCAGGAAATGCATATGCTGACGGTAAATTGCCTGTGCG‑ATCTGATCG‑AT‑AACACGCTTTTCCCTCACCAgg < 1:808818/238‑1 (MQ=255) cATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGCACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGGTCTGCATT‑‑CCTTCGCATCGTAGTGCTCGCATTCCGGAAATGGATATGCTTCCGGAAAATTGCC‑GTGGGAATAGGATCG‑AA‑AACACGCTTTTccccacccggg > 2:1021768/1‑231 (MQ=255) cATTCCCGCCCGTGGCAACAGCCGGGTTTTTGTTAAAGCATTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTAGTGCTCGCATTCAGGAAATGCATATGCTGACGGTAAATTGCCTGTGCG‑ATCTGATCG‑AT‑AACACGCTTTTCCCTCACCAg < 1:1236884/238‑1 (MQ=255) cATTCCCCCCCTGGGCAACAGCCGAGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTAGTGCTCGCATTCAGGAAATGCATATGCTGACGGTAAATTGCCTGTGCG‑ATCTGATCG‑AT‑AACACGCTTTTCCCTCACCAg < 1:1021768/238‑1 (MQ=255) cATTCCCCCCCGGGGAAACGCCGGCAATATGGTTAAAGCAGTTGAGGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTAGTGCTCGCATTCAGGAAATGCATATGCTGACGGTAAATTGCCTGTGCG‑ATCTGATCG‑AT‑AACACGCTTTTCCCTCACCAg < 1:556474/238‑1 (MQ=255) ttcccACCGGGGGCAAAAGCCGGGATATTGTAAAAGGATTGGAGGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTAGTGCTCGCATTCAGGAAATGCATATGCTGACGGTAAATTGCCTGTGCG‑ATCTGATCG‑AT‑AACACGCTTTTCCCTCACCAGga < 1:696471/235‑1 (MQ=255) ttCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTAGTGCTCGAATTCAGGAAATGCATATGCGGCCGGTAAATTGCCTGTGCG‑ATCGGATCG‑AT‑AACACGCTTTTCCCTCACCAggcta > 1:1128240/1‑236 (MQ=255) cccccttgcaaaCCGCCGCATTGTTGTAAAAGCAGTTGAGGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTAGTGCTCGCATTCAGGAAATGCATATGCTGACGGTAAATTGCCTGTGCG‑ATCTGATCG‑AT‑AACACGCTTTTCCCTCACCAGGATGAtt < 1:1294352/229‑1 (MQ=255) cccGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCCTT‑‑CCTTCGCCTCGTAGTGCTCGCATTCAGGAAATGCATATGCTGACGGTAACTTGCCTGTGCG‑ATCTGATCG‑AT‑AACACGCTTTTCCCTCACCAGAGTGATTaa > 1:1117195/1‑239 (MQ=255) cggTGGAACCAGCCGGGATTTTGTAAAAGCGTTTGAGGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTAGTGCTCGCATTCAGGAAATGCATATGCTGACGGTAAATTGCCTGTGCG‑ATCTGATCG‑AT‑AACACGCTTTTCCCTCACCAGGATGATTAAg < 1:626960/237‑1 (MQ=255) ccgggacAACAGCCGAGATTTTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTAGTGCTCGCATTCAGGAAATGCATATGCTGACGGTAAATTGCCTGTGCG‑ATCTGATCG‑AT‑AACACGCTTTTCCCTCACCAGGATGATTAAg < 1:711660/233‑1 (MQ=255) tGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTAGTGCTCGCATTCAGGAAATGCATATGCTGACGGTAAATTGCCTGTGCG‑ATCTGATCG‑AT‑AACACGCTTTTCCCTCACCAGGATGATTAAGgag > 1:665929/1‑239 (MQ=255) tGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGGTTGTTAGGGCCACAGGATGTGGAGAGCCGCATT‑‑CCTTCGCATCGGAGTGCTCGCATTCAGGAAATGCATATTCTGACGGTAAATTGGCTGGGCG‑AGTTGATCG‑GTAAACAC‑CTTTTCCCTCCCCAGGATGATTAAgggg > 2:124105/1‑237 (MQ=255) cgcgTTATTGTTAAAGCTGTTTAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTAGTGCTCGCATTCAGGAAATGCATATGCTGACGGTAAATTGCCTGTGCG‑ATCTGATCG‑AT‑AACACGCTTTTCCCTCACCAGGATGATTAAGGAGAATACAt < 1:207278/236‑1 (MQ=255) | GTAATGGAACTTCCGCTGCCAATGCACAGCATTTTGCTGCCAGCATGATCAACCGTTTCGAAACGGAGCGGCCCAGCTTACCTGCCATTGCACTAAATACTGATAATGTTGTCTTAACGGCGATTGCCAACGATCGCTTACATGATGAAGTGTATGCAAAACA‑GGTGCGGGCGCTGGGTCATGCGGGAG‑ATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTT‑GCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATT‑‑CCTTCGCATCGTAGTGCTCGCATTCAGGAAATGCATATGCTGACGGTAAATTGCCTGTGCG‑ATCTGATCG‑AT‑AACACGCTTTTCCCTCACCAGGATGATTAAGGAGAATACAT > NC_000913/3295951‑3296410 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |