| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,449,045 | T→G | 26.8% | intergenic (+3/+77) | chpB → / ← ppa | toxin of the ChpB‑ChpS toxin‑antitoxin system/inorganic pyrophosphatase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,449,045 | 0 | T | G | 26.8% | 111.6 / 11.6 | 64 | intergenic (+3/+77) | chpB/ppa | toxin of the ChpB‑ChpS toxin‑antitoxin system/inorganic pyrophosphatase |
| Reads supporting (aligned to +/- strand): ref base T (11/34); new base G (17/2); total (28/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.59e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTTTAATCAACTGGGAATGACGCTGGTGGCCCCCATTACGCAGGGCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCG‑TGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGC‑G‑TTTTCCCAACCTT‑CAACTTTCACCCA‑CTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAGTGAGCGATTTGCGCTTTCAGCAGTTCAGGCAGATCGTTAA > NC_000913/4448808‑4449282 | cTTTAATCATCTGGGAATGCCGGGGGTGGCCCCCATTACGCAGGGGGGAAATTTTTGCCGTTTTGCCGGATGTGTCGTTCCTTTACATTGCGAAGAAGGCGATGTTCACGGCG‑TGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACTCGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGgtg < 2:207289/239‑1 (MQ=255)cTTGAATCAACGGGGAATGAACGTGGCGGCCCCCATTACGCAGGGCGGAAATTTGGCCCGTTATGCCGTATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCG‑TGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGgt < 1:266524/238‑1 (MQ=255) cTGGGAATGACGCTGGTGGCCCCCATTACGCAGGGCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCG‑TGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGGGGGGGAATAAGGGGGG‑tttatttt > 1:1161083/1‑238 (MQ=255) aaTGACGCTGGTGGCCCCCATTACGCAGGGCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCG‑TGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGGGGAATAAGGGGGG‑GTTATTTTTtgcg > 1:436424/1‑239 (MQ=255) cGCTGGTGGCCCCCATTACGCAGGGCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCG‑TGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTAT‑TGGTCGGGCTGCGGATGAGGTGGTGGAAGAGGCGTTTTTACGCTTGCAGGGGGGGGGGGGAAAAGGGGGG‑ttttttttttgttttttt > 2:744453/1‑228 (MQ=255) cGCTGGGGGCCCCCATTACGCAGGGCGGAAATTTGGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCG‑TGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCAGTGGTGGAATAAGGTGTG‑TTTATTTATCGCGGGCa < 1:1047857/238‑1 (MQ=255) cctttagCAGGGCGAAAATTTTGCCCGGTATGGCGGATGTGGCGTTCCTTTACATTGCGGAGGAGGCGATGTGGCAGGCG‑TGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTa < 2:1272489/233‑1 (MQ=255) ttACGCAGGGCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCG‑TGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTG‑GTTTTTTTTTGCGGGGAT‑AAAAAAAACCCTACt > 1:379039/1‑239 (MQ=255) ggCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCG‑TGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGGGGAATAAGTGGGG‑TTTATTTTTCGCGGGGAT‑AAAAAAAACCTTCCTAACCGaa > 1:683674/1‑238 (MQ=255) ggCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCG‑TGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGGGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGAGGGGGTATAAGGTGTG‑TTTTTTTATCGCGGGGAT‑AAAAAAACCCTTCTTAACCGaa > 1:532110/1‑238 (MQ=255) ggCGGAAATTTTGCCCGTTATGCCGAATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCG‑CGGTGCTTGTGAATCAGGTGCGGCGTAGGGATCTACACGCCCGGCTGGCAGAGCGTAT‑TGATCTGGCTGCGGTTGCGGTGGTGGAAGGGGTGCTATTACGCTTCTAGGCGGGTGGGGAACAAGGGGGG‑TTGTTTTATCCCGGGCAA‑AAACAAACCCTTACTAAcagcac > 2:344707/1‑234 (MQ=255) aaaTTTTGGCCGTTTGGGCGGATTTTGGTTTCCTTTACAGTGCGAAGAAGGGGATGTGCACGGCG‑GGGGTCTGGTGAATCAGGTGCGGATGATGGAACTACACGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCg < 2:460502/238‑1 (MQ=255) aTTTTGCCCGTTAGGCCGGGTGTGAGGTTCCTTTACATGGCGAAGGAGGGGATGTGCAGGGCG‑TGGTGCTGATGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTAT‑GGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑g < 2:831553/239‑1 (MQ=255) tttGGCCGTTAAGCCGGATTTAGCGGTCCTTTACATTGCGAAGAAGGCGAATTGCACGGCG‑TGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑Gtt < 1:147696/239‑1 (MQ=255) tttGCCCGTTTGGCCGGATTTGGGGGTCCTTTACATTGCGAAGAAGGCGATGTGCCGGGGG‑TGGGGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGATGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑Gtt < 1:1253807/239‑1 (MQ=255) tGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCG‑TGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGtta‑tta < 1:751029/239‑1 (MQ=255) aGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCG‑TGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGCGGGGGAATCAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAAACCTTACTCACCGAAGCCCCGC‑GTTCAGGGTTA‑TTACGCCaacaga > 1:453331/1‑234 (MQ=255) gggTTCCTTTATATGGGGAAAAAGGAGTTGTGCACGGGG‑GGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACGCGCCCGGCTGGCAAAGCGTAT‑TGGGCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAgaagaa < 2:436424/237‑1 (MQ=255) acagctttttCATTGCGGAGAAGGGGTTGGGCGGGGGG‑TGGTGCTGGTGAAGCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAgaagaa < 2:417601/232‑1 (MQ=255) gTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCG‑TGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCTGGC‑GTTCAGGGTTA‑TTACGCCAgaagaa < 1:757714/237‑1 (MQ=255) tCCTTTACATTGCGAAGAAGGCGATGTGCACGGCG‑TGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGACTAAGGTGGG‑TTTATTTATCGCGGGCAT‑AAAAAAAACCTTACTAACCGAAGCCCGGC‑GGTTAGGGTTA‑TTTCGCCCGAAGGAAtta > 1:37700/1‑239 (MQ=255) cGAAGAAGGCGATGTGCACGGCG‑TGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGGG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCACGGTTA‑TTACGCCAGAAGAACTTA‑TTTTTTcccg > 1:417601/1‑234 (MQ=255) cGAAGAAGGCGATGTGCACGGCG‑TGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGGGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGGTA‑TTACGCCAGAAAAACTTT‑TTTATTTTTTgc > 1:859992/1‑239 (MQ=255) cGAAGAAGGCGATGTGCACGGCG‑TGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGCGGTGGAATAAGGGGGG‑TTTTTTTATCTCGGGCTTAAAAAAAACCCTTA‑TAACGAGAGCCCGGG‑GTTCAGGGGGT‑TTAAGCCAAAAAAAAATATTTTATTTTTTg > 2:1177098/1‑239 (MQ=255) cGAAGAAGGCGATGTGCACGGCG‑TGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGAGGGGGGCTAAGGGGGG‑GTTATTTGTAGCGGGCAT‑AAAAAAACCCCTACTAAACGGAAGCCGGC‑AGTTAGGGGTA‑TTACGCCAGAAGAACATT‑TTTAtttttttt > 2:853296/1‑237 (MQ=255) gaagaaGGCGATGTGCACGGCG‑TGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACCCGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTgcg < 1:119414/239‑1 (MQ=255) aagaagGCGATGTTCCCGGCG‑TGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTgcg < 1:1131435/238‑1 (MQ=255) aagaagGCCATGTGCACGGCG‑TGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTgcg < 1:434477/238‑1 (MQ=255) gATTTGCACGGTGTTGGTG‑TGGTTATTCAGGTGCGGTTGAGGGTTCTACCCGCGCGGCTGGCAAAGCGTAT‑TGGGCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTGCGCGCTCGaa < 2:162048/238‑1 (MQ=255) gATGTGCACGGCG‑TGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGGTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTGCGCGCCCGAag > 1:722263/1‑239 (MQ=255) aCGGCG‑GTGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTGCGCGCTCGAAGGAGGCaa < 1:796168/239‑1 (MQ=255) gCG‑TGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTAT‑TGGGCTGGCTGCGGATGAGGTGGAGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGGGGGATCAGGTGTG‑TTTCTTTATTGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGACCGGCGGTTGAGGG‑TG‑TTACGCCCGAAAGAATTA‑TTTCTTTTTCTCGACGACCAAGGAGGCAAcca > 2:410533/1‑237 (MQ=255) cG‑TGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAgaagaa < 1:1103602/202‑1 (MQ=255) gTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGGGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGGGGTGGAAAAGGGGGGG‑TTTTTTTTTTGCGGGGTT‑AAAAAAAACCTTGTTAACCGAGAACCGGC‑GGTTCGGGGTG‑TTACGACAGAAGACCTTT‑TTTTTTATTTGTGCGCGCGAAGGAGGCAAAGATATGAGGTTTa > 2:669742/1‑239 (MQ=255) gAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAg < 1:669742/238‑1 (MQ=255) tCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCCGAAGAACTTA‑TTTATTCTTTGCGCGCTCGAAAGAGGCCACGATTTCAGCTTTAGCg > 1:301831/1‑237 (MQ=255) tCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGGGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCCGAAGAACTTA‑TTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCg > 1:705598/1‑237 (MQ=255) ggtggattctcacGCCCGG‑TGGGCAAGCGTTTGTAGTCTGGCGGGGGGTGTGGGGGTGGAATGTGTCTTATTGCGCTTACGGGGGGTGG‑GGAAGAAGGTGTG‑TTTATTGATCGCGGTCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTGTAGCGGCTTCTGC‑G‑TTTTcc < 2:239938/229‑1 (MQ=255) tgGATCTACACGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGC‑G‑TTTTcc < 1:853296/238‑1 (MQ=255) aTCTACACGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCg < 1:54323/143‑1 (MQ=255) tACACGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCACGCGGTGGTGGAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑Gtt < 1:93038/145‑1 (MQ=255) tACACGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCACGCGGTGGTGGAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑Gtt > 2:93038/1‑145 (MQ=255) acacGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGC‑G‑TTTTCCCAACCTT‑c < 1:978331/239‑1 (MQ=255) cGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGGGGAATAAGGGGGG‑TTTATTTTTCGCGGGGCT‑AAAAAAAACCTTACTAACCGAAGCCCGGC‑CTTTAGGGTTATTTACCCCA‑AAGAAATTC‑TTTTTTTTTTGGCCGCTCGAAGGGGGCCACACTTTCACATTTAGCGGCTTTTTT‑GTTTTTCCCAACCtgaaa > 2:1129216/1‑235 (MQ=255) tgggttt‑tGGTCTGGGTGCGGATTGGGTGGTGGAAAGGGCGTTATTACGCTTTCAGGGGGTGGTGGAATGTGGTGTT‑GTTATTTATCGCGGGCAT‑AAAAAAACCCTTTCTAACCGAAGCCCGGC‑GTTCAGTGTTA‑TTACGCCAGTAGATCTTA‑TTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGC‑G‑TTTTCCCAACCTT‑CAACTTTCACCCA‑CTTGc < 2:680115/233‑1 (MQ=255) tGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCTTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGC‑G‑TTTTCCCAACCTT‑CAACTTTCACCCA‑CTTGCCTTTTTc < 1:602695/239‑1 (MQ=255) ggcTGGCTGCGGATGAGGTGGTTGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGC‑G‑TTTTCCCAACCTT‑CAACTTTCACCCA‑CTTGCCTTTTTCGa < 1:410533/237‑1 (MQ=255) gTCTTGGTGCGGGTGAGGGGGTGGAAGAGGCGTTATTTCGCTTGCAGGCGGTGGTTGAAAAAGGGGTG‑TTTATTTACCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGC‑G‑TTTTCCCAACCTT‑CAACTTTCACCCA‑CTTGCCTTTTTCGa < 2:301831/239‑1 (MQ=255) gTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGC‑G‑TTTTCCCAACCTT‑CAACTTTCACCCA‑CTTGCCTTTTTCGa < 1:340912/239‑1 (MQ=255) tCTGGCTGCGGAGTAGGTGGTGGAAGAGGCGTTATTAAGCTTGCAGGCCGTGGTGGAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGC‑G‑TTTTCCCAACCTT‑CAACTTTCACCCA‑CTTGCCTTTTTCGa < 1:1016244/238‑1 (MQ=255) tGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGGATAAGGGGTG‑TTTATTTATCGCGGGCAT‑AAAAAAAACCTTACTAACCGAAGCCCGGC‑GTTTAAGGGTA‑TTACGCCCGAAAGAATTC‑TTTATTCTTTGTGCGCTCGAAGGAGGGAACGGTTTCAGGTTTTGCGGCTTTTGC‑G‑TTTTTCCCACCCT‑CCACTTTTCCCCACCTTGCCttttctgggg > 2:1084253/1‑233 (MQ=255) tGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGC‑G‑TTTTTCCAACCCT‑CAAATTTTACCCC‑CTTGCCctttttgcggg > 1:837617/1‑233 (MQ=255) tGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGGGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAAACGAAGGCCGGC‑GTTCAGGGTTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTTCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTTTGC‑G‑TTTTTCCAACCTT‑CAACTTTCACCCA‑CTTGCCTTTTTCGAGGt > 1:1131858/1‑239 (MQ=255) gCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGGGGG‑GTTATTTATTGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGACCGGC‑GTTTAGGGGTT‑TTACGCCCGAAGAACTTC‑ATTATTCTTTGCGCGCTCGACGGAGGCAACGATTTCAGCTTTATCGGCTTTTCCGG‑TTTTCCCACCCTC‑AAAATTTCACCCC‑CTCCCCttttttccgtct > 2:285568/1‑232 (MQ=255) aGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGtta‑t < 2:229448/112‑1 (MQ=255) aGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAAACGAAGCCCGGC‑GTTCAGGGtta‑t > 1:229448/1‑112 (MQ=255) gagGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGGGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTGCGCGCTCGAAGGGGGCAACGATTTCAGC‑TTAACGGCTTCTGC‑G‑GTTTTCCAACCTTCCAACTTT‑AACCA‑CTTTCCCTTTTTCCGGTCTTTTTTATGCTCgtagaaagtag > 1:587373/1‑234 (MQ=255) cTTGCAGGCGGTGGTGGAATAAGGGGTG‑GTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGCA‑GTTTAGGGTTA‑TTTAGCCAGAAGAAATTA‑TTTATTCTTTGCGCGCCCGAAAGAGGAAACCATTTTCCCTTTAGTGGCTTTTCG‑G‑TTTTTCCACCCTC‑TACCTTTTCCCCC‑CTTGCCTTTTTTTCGGGTTTTGTATTGTTCGAGAAAGTGAGAGGTTTGTGCttt > 2:875592/1‑239 (MQ=255) tggcggCGGGGGTGGAATTAGGTGTG‑TTTATTTTTCGCGGGCCA‑AAAAAACCCCTTACTAACCGAAGCCCGGC‑GTGTAGGGTTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGC‑G‑TTTTCCCAACCTT‑CAACTTTCACCCA‑CTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAGTGAGCGATTTGCGCTTTca < 2:705598/235‑1 (MQ=255) tctgggggggggtggAAT‑AGGGGTGTTTTATTTATGCGGGGCAT‑AAAAAACCCCTCTCTAACCGAATCCCGGC‑GTTCAGGGTTA‑TTTCGCCAGAAGACTTTA‑TTTATTCTTTGCGCGCTCGAAGGAGGGAACGATTTCAGCTTTAGCGGCTTCTGC‑G‑TTTTCCCAACCTT‑CAACTTTCACCCA‑CTGGACTTTTTCGAGGGCGTTGTAGTGCTCGAAGAAGTGCGCGATTTGCGCTTTca < 2:859992/229‑1 (MQ=255) tGCAGGCGGTTGTGGAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGC‑G‑TTTTCCCAACCTT‑CAACTTTCACCCA‑CTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAGTGAGCGATTTGCGCTTTca < 1:620757/239‑1 (MQ=255) tGCAGGCGGTGGTGGAATAAGGTTGT‑TTTAATTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGC‑G‑TTTTCCCAACCTT‑CAACTTTCACCCA‑CTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAGTGAGCGATTTGCGCTTTca < 1:24615/239‑1 (MQ=255) gCAGGCGGTGGTGGAATAAGGGGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTAATAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTTCGCGCACGAAGGAGGAAACACGTTCAACTTTTGCGGCGTCTCC‑G‑GTTTTCCAACCTT‑CAACTTTCACCCA‑CATGCATTTTTTCAGGGTTTTTTTGGGCTCCAAGAAGTGGGGGAGATTCGCTTTcag > 2:1148520/1‑239 (MQ=255) ggtggtGGAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGC‑G‑TTTTCCCAACCTT‑CAACTTTCACCCA‑CTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAGTGAGCGATTTGCGCTTTCAGCAGtt < 1:1014670/238‑1 (MQ=255) ggAATAAGGTTTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGC‑G‑TTTTCCCAACCTT‑CAACTTTCACCCA‑CTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAGTGAGCGATTTGCGCTTTCAGCAGTTCAGGCa < 1:1153999/238‑1 (MQ=255) ggAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGC‑G‑TTTTCCCAACCTT‑CAACTTTCACCCA‑CTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAGTGAGCGATTTGCGCTTTCAGCAGTTCAGGCa < 1:1177098/238‑1 (MQ=255) gtgtg‑tTTTGTTTTCGCGTGCAT‑AAACAACCCCTTATGAACCGAAGCCCGGC‑GTTCAGTGTTA‑TTTGGCCAGATGAACTTA‑TTTATTTGTTGCGCTCTCGAAGGAGGCAACGATTTCAGGTTTAGAGGTTTCTGC‑G‑TTTTGCCAACCGT‑CAACGTTCATCCA‑ATTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAGTGAGCGATTTGCGCTTTCAGCAGTTCAGGCAGATCGTTaa < 2:236620/239‑1 (MQ=255) gtgtg‑tTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGC‑G‑TTTTCCCAACCTT‑CAACTTTCACCCA‑CTTGCCTTTTTCGAGGTCTTTGTAGGCCTCGAAGCAGTGAGCGCTTTGCGCTTTCAGCAGTTCAGGCAGATCGTTa > 1:620811/1‑238 (MQ=255) gtgtg‑tTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGC‑G‑TTTTCCCAACCTT‑CAAATTTCACCCA‑CTTGCCTTTTTCGCGGGCTTTTTAGTGCTCGAAGAAGTGAGCGATTTGAGCTTTCAGCAGTTCAGGCAGATCGTTa > 1:1117493/1‑238 (MQ=255) gtgtg‑tTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTATTC‑G‑TTTTCCCAACGCT‑AAAATTTCACCCC‑CTTGACTTTTTCGGGGCCTTTGTAGGGCTAGCAGAAGTGGAGGCTTTTCCCTTTATACAGTTCAGGCAGAACGTTaa > 2:1201205/1‑239 (MQ=255) tgtg‑tTTTTTTACCGAGGTCAT‑AAAAAAACCCTTCCTAACCGAAGCTCGGG‑GTTCAGGGTTA‑TTACGCCAGAAGAATTTA‑TTTATTCTTTGCGCGCTCGAAGGAGGCAACGGTTTCAGCTTTAGCGGCTTCTGC‑G‑TTTTCCCAACCTT‑CAACTTTCCCCCA‑CTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAGTGAGCGATTTGCGCTTTCAGCAGTTCAGGCAGATCGTTaa < 2:379039/238‑1 (MQ=255) tgtg‑tTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTGCGCGGTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGC‑G‑TTTTCCCAACCTT‑CAACTTTCACCCA‑CTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAGTGAGCGATTTGCGCTTTCAGCAGTTCAGGCAGATCGTTaa < 1:240609/238‑1 (MQ=255) tgtg‑tTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGC‑G‑TTTTCCCAACCTT‑CAACTTTCACCCA‑CTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAGTGAGCGATTTGCGCTTTCAGCAGTTCAGGCAGATCGTTaa < 1:1010663/238‑1 (MQ=255) tgtg‑tTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGC‑G‑TTTTCCCAACCTT‑CAACTTTCACCCA‑CTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAGTGAGCGATTTGCGCTTTCAGCAGTTCAGGCAGATCGTTaa < 1:1084253/238‑1 (MQ=255) tgtg‑tTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGC‑G‑TTTTCCCAACCTT‑CAACTTTCACCCA‑CTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAGTGAGCGATTTGCGCTTTCAGCAGTTCAGGCAGATCGTTaa < 1:420411/238‑1 (MQ=255) tgtg‑tTTAATTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGC‑G‑TTTTCCCAACCTT‑CAACTTTCACCCA‑CTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAGTGAGCGATTTGCGCTTTCAGCAGTTCAGGCAGATCGTTa < 1:316322/237‑1 (MQ=255) | CTTTAATCAACTGGGAATGACGCTGGTGGCCCCCATTACGCAGGGCGGAAATTTTGCCCGTTATGCCGGATTTAGCGTTCCTTTACATTGCGAAGAAGGCGATGTGCACGGCG‑TGGTGCTGGTGAATCAGGTGCGGATGATGGATCTACACGCCCGGCTGGCAAAGCGTAT‑TGGTCTGGCTGCGGATGAGGTGGTGGAAGAGGCGTTATTACGCTTGCAGGCGGTGGTGGAATAAGGTGTG‑TTTATTTATCGCGGGCAT‑AAAAAAACCCTTACTAACCGAAGCCCGGC‑GTTCAGGGTTA‑TTACGCCAGAAGAACTTA‑TTTATTCTTTGCGCGCTCGAAGGAGGCAACGATTTCAGCTTTAGCGGCTTCTGC‑G‑TTTTCCCAACCTT‑CAACTTTCACCCA‑CTTGCCTTTTTCGAGGTCTTTGTAGTGCTCGAAGAAGTGAGCGATTTGCGCTTTCAGCAGTTCAGGCAGATCGTTAA > NC_000913/4448808‑4449282 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |