| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 842,815 | C→A | 19.1% | Q162K (CAA→AAA) | rlmF → | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 842,815 | 0 | C | A | 19.1% | 133.8 / 2.8 | 53 | Q162K (CAA→AAA) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| Reads supporting (aligned to +/- strand): ref base C (22/20); new base A (2/9); total (24/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.60e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGGGCGGATTATATTCATCACCTTGCCGATTTACTGGCAGAAGCAAGCGGAACAATTCCAGCGAATGCCAGCATTCTGGATATCGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTACCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACGCGACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTGAGCGTAAACGCCGTAACCTGGGGCTGAACAAAGACGATGCACTGAACTTTGGCGGCCAGCAACAGGAGTTGTGGTGTGAAGGCGGTGAAGTCACCTTTATCAAAAAGATGATTGAAGAGAGCA > NC_000913/842578‑843052 | cgggcGGATTTATTTCATCCCCTTGCCGATTTCCTGGCAGAAGCAAGCGGAAAAATTCCAGCGAATGCCATCATTATGGATACTGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGGGTTTTACCGGTAGTGAAACCAGCCGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGc < 2:804806/238‑1 (MQ=255) ggcGGATTATATTCATCACCTTGCCGATTTACTGGCAGAAGCAAGCGGAACAATTCCAGCGAATGCCAGCATTCTGGATATCGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTACCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCaaa > 1:279598/1‑239 (MQ=255) ggcGGATTATATTCATCACCTTGCCGATTTACTGGCAGAAGCAAGCGGAACAATTCCAGCGAATGCCAGCATTCTGGATATCGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTACCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCCCCATTGGTCTGCGTCGGCaaa > 1:166844/1‑239 (MQ=255) tcatccCCTTGCCTATTTACTGGCAGAAGCAAGGGGAACAATTCCCGCGAATGCCAGCATTCTGGATATCGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTACCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCAAAAAGAGAGTgggg < 2:269627/239‑1 (MQ=255) tcaacaCCTTGCCGATTTACTGGCAGAAGCAAGCGGAACAATTCCAGCGAATGCCAGCATTCTGGATATCGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTACCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCAAAAAGAGAGTgggg < 1:264163/239‑1 (MQ=255) tcaCCTTGCCGATTTACTGGCAGAAGCAAGCGGAACAATTCCAGCGACTGCCAGCATTCTGGATATCGGCGTTGGTGCGAACTGTATTTATACGCTGATTGGCGTACATGACTATGGCTGGAGTTTTACCGGTAGGGAAGACAGCGGCCCGGGGTTAAGCAGATGGCAGGCGATTTTCGGATATAAACCAGGGCATAACAGGCCCATTCGGCTGCGGCGGAACAAAGAGAGGGGGG‑CGa > 2:801309/1‑239 (MQ=255) aCCTTGCCGATTTACTGGCAGAAGCAAGCGGAACAATTCCAGCGAATGCCAGCATTCTGGATATCGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTACCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGGGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGGCCCATTCGTCTGCGTCGGCAAAAAAAGAGTGGGG‑CGAtt > 1:678892/1‑239 (MQ=255) tGCCGATTTACTGGCAGAAGCAAGCGGAACAATTCCAGCGAATGCCAGCATTCTGGATATCGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTACCGGTAGTGAAACCAGCAGCCAGGGGTTAAGCAGTGCGCAGGCGCTTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGAAAAAAGAGAGGGGGG‑CGAGTTTTa > 2:582767/1‑239 (MQ=255) tgcgttttCCTGGCAGAAGGAAGGGGAACAATTCCAGCGAATGCCAGCATTCTGGAGAGCGGTGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCGGGCGTTTTACCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTaa < 2:861553/234‑1 (MQ=255) gCCGATTTACTGGCAGAAGCAAGCGGAACAATTCCAGCGAATGCCAGCATTCTGGATATCGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTACCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTaa < 1:582767/239‑1 (MQ=255) agcaagcGGAACAATTCCAGCGAATGCCAGCATTCTGGATATCGGCGTTGGTGCGAACTGTATTTATCCGTTGATTGGCGTACATGAATATGGCTGGCGTTTTACCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATaaaa < 1:632373/239‑1 (MQ=255) aagcGGGACAATTCCAGCGAATGCCAGCATTCGGGATATCGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTACCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAAc < 1:898591/238‑1 (MQ=255) aaatggAACAATTCCAGCGAATTCCCGCATTCTGGATTGCTGCTTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTACCGGTAGTGAAACCAGCAGGCAGGTCTTAAGCAGTGGTCAGGCAATTATCAGTTCTAATACGGGGCTTAACCGCGCCATTCGTATGCGTCCGCAAAAAGAGAGCGGGG‑CGATTTTTAACGGCATCATCCATAAAAACg < 2:678892/235‑1 (MQ=255) ggAACAATTCCAGCGAATGCCAGCATTCTGGATATCGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTACCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAg < 1:199260/237‑1 (MQ=255) ggAAAAATTCCAGGGAATGCCAGGATTTGGGAAATCGGGGTTGGTGCAAACTGTATGTAACCGCTGATTGGTGTACATGAATATGGGTGGCGTTTTACCGGTAGGGAAACCAGCAGCCAGGCGTTAAGCAGGTCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAg < 2:529862/237‑1 (MQ=255) aaCAATTCCAGCGAATGCCAGCATTCTGGATATCGGCGTTGGTGCGAACGTTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTACCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑Caa < 1:440757/238‑1 (MQ=255) ttCCAGCGAATGCCAGCATTCTGGATATCGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTACCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATacgac < 1:346443/239‑1 (MQ=255) ttcaggcaaTGCCAGTATTCTGGATTTCGGGTTGGGGGCGAACTGTATTTATCCGCTGAGTGGCGTACATGAATATGGCTGGCGTTTCACCGGTAGTGAACCCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATacgacg < 2:279598/232‑1 (MQ=255) tCCAGCGAATGCCAGCATTCTGGATATCGGCGTTTGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTACCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATacgacg < 1:676534/239‑1 (MQ=255) gggAATGCCAGCATGTTGGATATCCGGGTTTGTGCGAACTGTATTTATCCGATGATTGGCCGACATGAATCTGGCTGGCGTTTTACCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCAGCCATAAAAACGAG‑CAATACGAcgcgtc < 1:66707/237‑3 (MQ=255) tagaagacAGTATTGTGGATATTGGTTGTGGTGGCAACTGTATTTATCCGCTGGTTGGCGTACGTGAATATTGCTGGCGTGTGAAGTGTAGTAAACACAGCAGGCAGGCGTTAAGCAGTGTGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTGTGCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCAGCCATAAAAACGAG‑CAATACGACGCGccc < 2:855057/232‑1 (MQ=255) tGCCAGCATTCTGGATATCGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTACCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCCTAAAAACGAG‑CAATACGACCCGACCTtgt > 1:566416/1‑239 (MQ=255) cATTCTGGATATCGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTACCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCCAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACGCGACCTTGTGT‑AAc > 1:208403/1‑238 (MQ=255) cGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTACCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATACCCCATAAAAACGGG‑CAAAACGACCCGACCTTTGGTAAACCCCCCATccccc > 2:387804/1‑237 (MQ=255) cGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTACCGGTAGTGAAACCAGCAGCCAAGCGTTAAGCAGTGCGCAGGCGGTTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCAAAAAGAGAGTGGGC‑GGCTTTTTAACGGCATCCTCCATAAAAACGGG‑CACAACGCCGCGCCCTTGGGT‑AACCGCCCATTCCAca > 2:490404/1‑238 (MQ=255) ttATTCATCCGCTGTGTGGGATCCTGGAATTTGGGTGGTTTTTTACCGGTAGGGAAACACGCAGCCGTGCTGTAAGCGGTGCGCAGGCGATTACAAGTTCTAACCGGGGGCTTAACCGCGCAATTCGTCCGCTTCGGCAAAAGGAGGGTGGGG‑CAATTTTTAACGGCATAATCCATAAAAACGAG‑CAATACGAGGCGCCCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCa < 2:771061/238‑1 (MQ=255) tgttttACCCGGTTATTGGCTTCAGTGAATTTGGTTGGCTTTTGACCGGTAGGAAAACCAGCAGCCGGGCTTTAAGCAGGGCCAAGGCGATTACCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACGCGACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCa < 1:136163/236‑1 (MQ=255) tATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTACCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACCCGACCTTGTGG‑AACCCGCCATTCCCCGATTCCGCCGCTGCGGccc > 1:635164/1‑237 (MQ=255) cTGATTGGCGTACATGAATATGGCTGGCGTTTTACCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATaaaa > 2:437991/1‑169 (MQ=255) cTGATTGGCGTACATGAATATGGCTGGCGTTTTACCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATaaaa < 1:437991/169‑1 (MQ=255) cTGATTGGCGTACATGAATATGGCTGGCGTTTTACCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACCCGACCTTGTGT‑AACCCGCCATTCCACGATTCCCCCCCGCCGGCACGGGCAgggaa > 2:519236/1‑236 (MQ=255) gATTGGCGTACAGGAATATGGCGGGCGTTTTACCGGTAGTGAAACCAGCAGCCGGGCTTTAAGCAGGGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGAAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACGCGACCTTGTGT‑ACCCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTg < 1:244312/239‑1 (MQ=255) ggggggggtttttACGGGTAGTAAACCCGGCCGCGGGGCGTTAAACAGTGCGCAGGGGATTACCAGTTTAAACCGGGGGCTAACCCGCGCCATTCGGTGGGGGGGGAAAAAAGAGAGGGGGG‑CGATTTTTAACGCCATCACCCATAAAAACGGG‑CAATCCGCCGCGACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTGAGCGTAAACGCCGTAAcc < 2:566416/230‑1 (MQ=255) ctggcGTTTTACCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACGCGACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCCGGTAGTGAGCGGAAAAGCCGTAACCTgg > 1:722284/1‑239 (MQ=255) ggcGTTTTACCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCAAAAAGAGAGTAGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACGCGACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCCCTGGGGCACGGGCAGGAAGTGAGCGTAAACGCCGTAACCCgggg > 2:67216/1‑239 (MQ=255) gcGTTTTACCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCAAAAAGGGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACCCGCCCTTGTGT‑AACCCGCCATTCCCCGCTTCCGCCCCTCCGGCCCGGGCAGGTAGGAGGCGAAAAACCCGGAACCCggggg > 2:171736/1‑238 (MQ=255) gcGTTTTACCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACGCGACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGAAGTGAGCGTAAACGCCGTAACCTggg > 1:548728/1‑237 (MQ=255) cccgggtggaaaaCCAGGAGCCGGGGTTTAAGCAGGGCGCGGGGGATTAGCAGTTCAAAGCGGGGGCTTACCCGCGCCAGTCGTCGGCGTGGGAAAAAAGAGAGGGGGG‑CGATTTTTAACGCCACCATCCAAAAAAACGAG‑CAATCCGACGCGACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTGAGCGTAAACGCCGTAACCTGGGGCTGAACaa < 2:296114/229‑1 (MQ=255) aaaCCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACGCGACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCCCTGCGGCACGGGCAGGTAGTGAGCGTAAACGCCGTAACCTGGGGCTGAACAAAGAcattgc > 1:634171/1‑233 (MQ=255) gTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACGCGACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTGAGCGTAAACGCCGTAACCTGGGGCTGAACAAAGAAGATGCACTGAACTTTGGCGGCCAGCAACAg > 1:443077/1‑239 (MQ=255) tGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACGCGACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTCAGCGCAAACGCCGGAACCTGGGGCTGAACAAAGACGATGCACTGAACTTTGGCGGCCACCAACAgg > 1:227239/1‑239 (MQ=255) gcAGGCTATTATCAGTTCAAAGCCGGGGTTTAACCGCGCCATTCGGCTGCGTCGGAAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCACCCATAAAACCGAG‑CAATACGACGCGCCCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTGAGCGTAAACGCCGTAACCTGGGGCTGAACAAAGACGATGCACTGAACTTTGGCGGCCAGCAACAGGAg < 1:171736/238‑1 (MQ=255) ggCGATTAACAGTTCTAATCCGGGTCTTAACCGGGCCATTCGTCTGCGTCGGAAAAAAGAGAGGGGGG‑CGATTTTAAACGGCATCATCCATAAAAACGAG‑CAATACGACGCGACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTGAGCGTAAACGCCGTAACCTGGGGCTGAACAAAGACGATGCACTGAACTTTGGCGGCCAGCAACAGGAGTtg < 1:591993/238‑1 (MQ=255) aTCAGTTATAATCCGGGGCTTAACCGCGCCATTCGTCTGCGACGGAAAAAAGAGAGGGGGG‑CAATTTTTAACGGCATCACCCATAAAAACGAG‑CAATACGACGCGACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTGAGCGTAAACGCCGTAACCTGGGGCTGAACAAAGACGATGCACTGAACTTTGGCGGCCAGCAACAGGAGTTGTGGTGTGa < 1:387804/239‑1 (MQ=255) gTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACGCGACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTGAGCGTAAACGCCGTAACCTGGGGCTGAACAAAGACGATGCACTGAACTTTGGCGGCCACCAACAGGGGTTGTGGTGTGAAGGc > 1:420660/1‑239 (MQ=255) tCTAAGCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCAAAAAGAGGGTGGGG‑CGATTTTTAACGGCATCATCAATAAAAACGAG‑CAATCGGCCGGGACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTGAGCGTAAACGCCGTAACCTGGGGCTGAACAAAGACGATGCACTGAACTTTGGCGGCCAGCAACAGGAGTTGTGGTGTGAAGGCg < 1:490404/238‑1 (MQ=255) aTCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACGCGACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGGAGTGAGCGTAAACGCCGTAACCTGGGGCTGGACAAAGACGCTGCACTGAACTTTGGCGCCCAGCAACAGGAGGGGTGGGGTGAAGACGGGGag > 2:583099/1‑238 (MQ=255) gggCTTAACCGCGCCATTCGTCTGCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACGCGACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTGAGCGTAAACGCCGTAACCTGGGGCTGAACCAAAACGATGACCTGAACTTTGGCGGCCAGCAACAGGAGTTGTGGGGTGAAGGCGGTGAAGTc > 1:17965/1‑237 (MQ=255) gcCATTCGTTGGCTTCGGCAAAAAGAGAGGGGGG‑CTATTTTTAACGGCATCATCCAAAAAAACGAG‑CAATGCGACGCGACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTGAGCGTAAACGCCGTAACCTGGGGCTGAACAAAGACGATGCACTGAACTTTGGCGGCCAGCAACAGGAGTTGTGGTGTGAAGGCGGTGAAGTCACCTTTATCaaaaa < 1:712672/239‑1 (MQ=255) gcCATTCGTCGGGGGCGGAAAAAAGGGAGTAGGG‑CGATTTTAAACGGCATCACCCAAAAAAACGAG‑CAATACGGCGCGACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTGAGCGTAAACGCCGTAACCTGGGGCTGAACAAAGACGATGCACTGAACTTTGGCGGCCAGCAACAGGAGTTGTGGTGTGAAGGCGGTGAAGTCACCTTTATCaaaaa < 1:67216/239‑1 (MQ=255) tGCGCCGGAAAAAAG‑GAGTGGGGTCTTTTTTTAACGGATCCCTCAAAAAAAGCGAG‑CATAGCGGCGCGCCCTTGGGA‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTGAGCGTAAACGCCGTAACCTGGGGCTGAACAAAGACGATGCACTGAACTTTGGCGGCCAGCAACAGGAGTTGTGGTGTGAAGGCGGTGAAGTCACCTTTATCAAAAAGATGATTGaa < 2:208403/239‑1 (MQ=255) gctgcGGAAAAAGGAGAGTGGGG‑CGATTTTAAACGGCATAATCCA‑AAAAACGGGACAATCCGCCGGGCCCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTGAGCGTAAACGCCGTAACCTGGGGCTGAACAAAGACGATGCACTGAACTTTGGCGGCCAGCAACAGGAGTTGTGGTGTGAAGGCGGTGAAGTCACCTTTATCAAAAAGATGATTGAag < 1:70083/235‑1 (MQ=255) cGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACGCGACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTGAGCGTAAACGCCGTAACCTGGGGCTGAACAAAGACGATGCACTGAACTTTGGCGGCCAGCAACAGGAGTTGTGGTGTGAAGGCGGTGAAGTCACCTTTTTCAAAAAGATGATTGAagg > 1:619345/1‑238 (MQ=255) gCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACGCGACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGGAGTGCGCGTAAACACCGTAACCTGGGGCCAAACAAAGACAAGGCCCGGACCTTTTGCGGCCACAAAAAGGGGATGTGTGGGGACGGAGGGGAGGTCACCTGTTTCAAAAACAGAATTGaaagaagaa > 2:881792/1‑232 (MQ=255) | CGGGCGGATTATATTCATCACCTTGCCGATTTACTGGCAGAAGCAAGCGGAACAATTCCAGCGAATGCCAGCATTCTGGATATCGGCGTTGGTGCGAACTGTATTTATCCGCTGATTGGCGTACATGAATATGGCTGGCGTTTTACCGGTAGTGAAACCAGCAGCCAGGCGTTAAGCAGTGCGCAGGCGATTATCAGTTCTAATCCGGGGCTTAACCGCGCCATTCGTCTGCGTCGGCAAAAAGAGAGTGGGG‑CGATTTTTAACGGCATCATCCATAAAAACGAG‑CAATACGACGCGACCTTGTGT‑AACCCGCCATTCCACGATTCCGCCGCTGCGGCACGGGCAGGTAGTGAGCGTAAACGCCGTAACCTGGGGCTGAACAAAGACGATGCACTGAACTTTGGCGGCCAGCAACAGGAGTTGTGGTGTGAAGGCGGTGAAGTCACCTTTATCAAAAAGATGATTGAAGAGAGCA > NC_000913/842578‑843052 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |