| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,561,294 | T→C | 13.5% | intergenic (+396/‑74) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,561,294 | 0 | T | C | 13.5% | 153.4 / 2.3 | 65 | intergenic (+396/‑74) | yffL/yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base T (33/22); new base C (4/5); total (38/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.75e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCAGCTTAAAAGACGGGCTTAGCAGTGATGGTTATCCGCCACGAATGTCCGTCATATTGCATTGCGCAGAAACGCGTGGCACTGAGGGAGTTTTCCGAATTAGTTTTGGGGACCCTTTCCCTGCTTCTGGAGCAAAAGACGAACGGCAAATGCAGTGCTTCCTTGTACGACTGCAGCGAAG > NC_000913/2561058‑2561524 | aTTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGGCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCa < 1:853788/239‑1 (MQ=255) ttAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCA‑CGCCCAACCTGAACACCAGAC‑CAACAAACCATCATCGCATTCGTCCATGGGGAGCGGGGAATAACTCaa > 2:177481/1‑239 (MQ=255) ttAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGAAAATCACaa > 2:365751/1‑239 (MQ=255) aaTTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGGAACGCCCATTCACTAA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGAGGAGCGCGGGATATCTCAAAtggg > 1:816993/1‑238 (MQ=255) tCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTAAAAgggcact > 1:641906/1‑235 (MQ=255) ggCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATGGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCt < 1:345796/239‑1 (MQ=255) cGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGACCGCGGAAAATCTCAAAAGGAAATTTCTTATtg > 2:18123/1‑239 (MQ=255) cGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTAA‑CGAACAACCTGACAAGCAGAC‑CAACAAACCATCATGGAATTCGTTCATGGGGCGCGCGGTAAATCTCAAAGGGGGATTGCTTATtg > 1:156531/1‑239 (MQ=255) gAGTTTTTTTGCCCCCCCGGCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAAGTATTTCGCCGCCTGATAGGGCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATtggt < 2:8529/238‑1 (MQ=255) gAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCGAGAGTTAAACAGAAGATTTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTAC‑CGCACCACCGGACCAGCAGAC‑CAACAAACCATCATGGCTTTCGTTCATGGGGATCGCGGGATATCTCCAAGGGTGTTTTTTTCTtggtg > 2:585608/1‑239 (MQ=255) ccGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCA‑CGCCCAACCTGAACCGCAGAC‑CAACAACCCACCATGGCATTCGTTCATGGGGCACGCGGTATATCTCAAAGGGCGATTTTTTATTGGTGGGCCTTAGGAAgcat > 1:281675/1‑236 (MQ=255) ggtcATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGAATATCCCAAAGGGGAATTTCTATTTGGTGGGCCTTCGGAAgagtttgggc > 2:364598/1‑230 (MQ=255) cgtgagGCGCCTAAAGTTAAACAGAAGAATTATTTCGCCCCCTCATAGGGCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTGCCAGCAAGCTGGAAACGCCCATGCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGc < 2:501414/236‑1 (MQ=255) agagagATGCCTAGATGTAAACGTAAGAATTATTTCGGCACCTGATTGGTCGACTGGTTGCGAGCATTAACCATGCTGGTTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGc < 1:380704/239‑1 (MQ=255) gggTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCa < 1:882607/236‑1 (MQ=255) tCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCCTGGGAGGCCCGGTATATCCCAAAgg > 2:518743/1‑189 (MQ=255) tCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGGGGGCCTTCGGAAGGCTTCGAGCAATTGCCAGCtt > 2:395161/1‑239 (MQ=255) tCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGAGGGCCTTCGGAAGGCTTCGGGCAATTGCCGGCtt > 1:203126/1‑239 (MQ=255) tCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCCCAAAGGGGGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTTCCAGCta > 2:267892/1‑238 (MQ=255) tCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCA‑CCCACAACCTGAAAAGCAGAC‑CAACAAACCATCATGTAATTCGTTCATGGGGAGCGCGGGATATCTCAAAGGGTGATTTCTTATTTGTGGGCCTTCGAAAGGCTTCGAGCAATTGCCAGCta > 2:270747/1‑238 (MQ=255) gatttAAATAAAAGATTTAATTCGCACCCTGATAGGTCGGCTGGTTTCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGTAAACGCACATTCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCAAGCTTAAAAGAc < 2:354882/236‑1 (MQ=255) gagTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCAGCTTAAAAGAc < 1:18123/239‑1 (MQ=255) gTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCAGCTTAAAAGAc < 1:267892/237‑1 (MQ=255) ttAAACAAAAAAATTTTTTCCCCGCCTGATAGGTCGGCTGGTTGCGGACATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCAGCTTAAAAGACggg < 2:846875/239‑1 (MQ=255) aaaCAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCAGCTTAAAAGACGGGCt < 1:716256/239‑1 (MQ=255) aaaCAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCAGCTTAAAAGACGGGCt > 1:355521/1‑239 (MQ=255) aagaaTTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCAGCTTAAAAGACGGGCTTAGCAg > 1:562240/1‑239 (MQ=255) agaaTTTATTCGCCGGCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCAGCTTAAAAGACGGGCTTAGCAGt < 1:365751/239‑1 (MQ=255) ttattTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTGCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCAGCTTAAAAGACGGGCTTAGCAGTGATg > 1:594404/1‑239 (MQ=255) cGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCCCAAAGGGGGATTTCTTATTGGTGGGCCTTCGGAAGTGTTCGAGAAATTGCCAGCTTTAAGAACGGGCTTAGCAGTGATGGTTATCCGCCACGAATTTCCg > 2:394905/1‑239 (MQ=255) ggCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGTGGGGc > 2:427445/1‑164 (MQ=255) ggCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGc < 1:427445/164‑1 (MQ=255) ggtttggAGCATTAACCAGGCTGGTAAGCCAAATCCTTTCCAGCAAGTCGGAAACGCCCATTCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCAGCTTAAAAGACGGGCTTAGCAGTGATGGTTATCCGCCACGAATGTCCGTCata < 1:454898/233‑1 (MQ=255) ggTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGAGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCAGCTTAAAAGACGGGCTTCGCAGGGATGGTTATCCGCCACGAAGGTCCGCCata > 1:387907/1‑239 (MQ=255) ggggcttcaaCCATGCTGTTTAGCCAAATCCTTTCCACCAAGCTGGAAACGCCCATTC‑CTCACCGCACAACCTGAACAGTAGTC‑AAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCAGCTTAAAAGACGGGCTTAGCAGTGATGGTTATCCGCCACGAATGTCCGTCATattgca < 2:275725/231‑1 (MQ=255) gCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCA‑AGCACAACCTGCACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCCTGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCTTTCGAAAGGCTTCGAGCAATTACCAGATTAAAAGACGGGCTTAGCAGAGGTGGTGATCCGGCACAACTGTCCGCAATATTGAATTGCGCAAAAAcgg > 2:842804/1‑238 (MQ=255) tGATTAGCCCAATTATTACCAGCAAGGTGGAAACGCCCATTCACTCA‑CGCACAACCTGACCAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCAGCTTAAAAGACGGGCTTAGCAGTGATGGTTATCCGCCACGAATGTCCGTCATATTGCATTGCGCAGAAAcgcg < 2:208145/238‑1 (MQ=255) tCATTTCCAGCAAGCTGGAAACGCCCATTCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCAGCTTAAAAGACGGGCTTAGCAGTGATGGTTATCCGCCACGCATGTCCGTCCAATTTCATTGGGCAAAAACGCGGGGGACTGAGGGa > 2:151392/1‑239 (MQ=255) tCATTTCCAGCAAGCTGGAAACGCCCATTCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCAGCTTAAAAGACGGGCTTAGCAGTGATGGTTATCCGCCACGAATGTCCGTCATATTGCATTTCGCGGAAACGCGTGGCACTGAgggg > 1:454953/1‑238 (MQ=255) tCATTTCCAGCAAGCTGGAAACGCCCATTCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCAGGCAATTGCCAGCTTAAAAGACGGGCTTGGCAGTGATGTGTATACCCCACGATAGTCCGCAATATGGCTTTACGCAGAAACGGGGGGCAC‑GAggggg > 2:251805/1‑237 (MQ=255) aGCAAGCTGGAAACGCCCATTCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCAGCTTAAAAGACGGGCTTAGCAGTGATGGTTATCCGCCACGAATGTCCGTCCTATTGCATTGCGCAGAAACGCGTGGCACTGAGGGGGTTTTCCg > 1:333827/1‑239 (MQ=255) cAAGCTGGAAACGCCCATTCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCAGCTTAAAAGACGGGCTTAGCAGTGATGGTTATCCGCCACGAATGTCCGTCATATTGCATTGCGCAGaa > 1:236696/1‑211 (MQ=255) cccccTTTCCCACA‑CGCACACCTCGAAC‑GCAAACTCAAAAAAACACAATGGCATCCGTTCAGGGGGAGCGCGGTATACCTCAATGGTGGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCAGCTTAAAAGACGGGCTTAGCAGTGTTGGTTATCCGCCACGAATGTCCGTCATATTGCATTGCGCAGAAACGCGTGGCACTGAGGGAGTTTTCCGAATTAGTTTTggg < 2:777002/237‑1 (MQ=255) cca‑cGCACAACCTGAACAGCAGCC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCCCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCAGCTTAAAAGACGGGCTTAGCAGTGATGGTTATCCGCCACGAATGTCCGTCATATTGCATTGCGCAGAAACGCGTGGCACTGAGGGAGTTTTCCGAATTAGTTTTGGGGACCCTTTccc < 1:177481/238‑1 (MQ=255) ccTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCAGCTTAAAAGACGGGCTTAGCAGTGATGGTTATCCGCCACGAATGTCCGTCATCTTGCATTGCGCAGAAACGCGTGGCACTGAGGGAGTTTTCCGAATTAGTTTTGGGGACCCTTTCCCTGCTTCTggg > 2:751815/1‑238 (MQ=255) aaCAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGAGCCTTCGGAAGGCTTCGAGCAATTGACAGCTTAAAAGACGGGCTTAGCAGTGATGGTTATCCGCCACGAATGTCCGTCATATTGCATTGTGCAGAAACGCGTGGCCCTGAGGGAGTTTTCCTAATTAGTTTTGGGGACCCTTTCCCTGTTTTTGGAGaaa > 2:695442/1‑239 (MQ=255) gaagAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGGATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCAGCTTAAAAGACGGGCTTAGCAGTGATGGTTATCCGCCACGAATGTCCGTCATATTGCATTGCGCAGAAACGCGTGGCACTGAGGGAGGTTTCCGAATTAGTTTTGGGGAACCTTTCCCTGCTTCTGGAAAAAAAGa > 2:675772/3‑239 (MQ=255) cagAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCAGCTTAAAAGACGGGCTTAGCAGTGATGGTTATCCGCCACGAATGTCCGTCATATTGCATTGCGCAGAAACGCGTGGCACTGAGGGAGTTTTCCGAATTAGTTTTGGGGACCCTTTCCCTGCTTCTGGAGCAAAAGAc > 1:542177/1‑239 (MQ=255) agAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCAGCTTAAAAGACGGGCTTAGCAGTGATGGTTATCCGCCACGAATGTCCGTCATATTGCATTGCGCAGAAACGCGTGGCACTGAGGGAGTTTTCCGAATTAGTTTTGGGGACCCTTTCCCTGCTTCTGGAGCAAAAGACg > 1:306058/1‑239 (MQ=255) gAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCAGCTTAAAAGACGGGCTTAGCAGTGATGGTTATCCGCCACGAATGTCCGTCATATTGCATTGCGCAGAAACGCGTGGCCCTGGGGGAGTTTTCCGAATTAGTTTTGGGGACCCTTTCCCTGCTTCTGGGGCAAAAGAcaa > 2:163396/1‑237 (MQ=255) c‑cAAAAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCAGCTTAAAAGACGGGCTTAGCAGTGATGGTTATCCGCCACGAATGTCCGTCATATTGCATTGCGCAGAAACGCGTGGCACTGAGGGAGTTTTCCGAATTAGTTTTGGGGACCCTTTCCCTGCTTCTGGAGCAAAAGACGa < 1:175761/237‑1 (MQ=255) caacaaACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCAGCTTAAAAGACGGGCTTAGCAGTGATGGTTATCCGCCACGAATGTCCGTCATATTGCATTGGGCAGAAACGCTTGGCCATGAGGGAGCTTTTGGAATTGGTTTTGGGAGCCCTTTCCCTGCTTCTGGGAGAAAAgacggacg > 2:380840/1‑239 (MQ=255) caacaaACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCAGCTTAAAAGACGGGCTTAGCAGTGATGGTTATCCGCCACGAATGTCCGTCATATTGCATTGCGCAGAAACGCGTGGCACTGAGGGAGTTTTCCGAATTAGTTTTGGGGACCCTTTCCCTGCTTCTGGAGCAAAAGACGAACg > 1:116045/1‑239 (MQ=255) aaCCTTCTTGGCATTGTTTTATGGGGGGGCGGGTAATTTTAAAAGGGTGATTTTTTATTGGGGGGCTTGGGGAAGGCTTCGGCCAATTGCCAGCTTAAAAGACGGGCTTAGCAGTGATGGTTATCCGCCACGAATGTCCGTCATATTGCATTGCGCAGAAACGCGTGGCACTGAGGGAGTTTTCCGAATTAGTTTTGGGGACCCTTTCCCTGCTTCTGGAGCAAAAGACGAACGGCaaa < 2:562240/239‑1 (MQ=255) ccctcatGGCTTTCTTGCAGGGGGGGCGCGTTATATCTCAAAGGGTGATTTCTTATTGGGGGCCCTTCGGAAGGCTTTGAGCATTGGCCTGCTTAAAAGATGGGCTTAGCAGTGATGGTTATCCGCCACGAATGTCCGTCATATTGCATTGCGCAGAAACGCGTGGCACTGAGGGAGTTTTCCGAATTAGTTTTGGGGACCCTTTCCCTGCTTCTGGAGCAAAAGACGAACGGCAAATg < 2:454953/236‑1 (MQ=255) tcatGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCAGCTTAAAAGACGGGCTTAGCAGTGATGGGTATCCGCCACGAATGTCCGGCAGATTGCATTGCGCAAACACGAGTGGCACTGAGGAGGTTTTCGGATTTAGTTTTGGGGACACTTTCCCTGCTTCTGGAACAAAACACCAAGAGCAAAGGCaa > 2:144698/1‑238 (MQ=255) ctGGCTTTCGTTTCTGGGGGGCGGGGTATATCTCAAAGGGTTATTTTTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCAGCTTAAAAGACGGGCTTAGCAGTGATGGTTATCCGCCACGAATGTCCGTCATATTGCATTGCGCAGAAACGCGTGGCACTGAGGGAGTTTTCCGAATTAGTTTTGGGGACCCTTTCCCTGCTTCTGGAGCAAAAGACGAACGGCAAATGCAGTg < 2:542177/238‑1 (MQ=255) ttCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGACGGCTTCGAGCAATTGCCAGCTTAAAAGACGGGCTTAGCAGGGATGGTTATCCGCCACGAATGTCCGTATAATTGCTGTGCGCCGAACAGCGTGGCACTGCGGGAATTTTCCGACTTAGTTTTGGGGACCCTTTCCCTGATTCTGGGGCAAACAACGAAAGGAAAATGCGAGGCTTCCt > 2:169164/1‑239 (MQ=255) ttCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCAGCTTAAAAGACGGGCTTAGCAGTGATGGTTATCCGCCACGAATGTCCGTCATATTGCATTGCGCAGAAACGCGTGGCACTGAGGGAGTTTTCCGCATTAGTTTTGGGGACCCTTTCCCTGCTTCTGGAGCAAAAGACGAACGGCAAATGCAGTGCTTCCt > 1:897341/1‑239 (MQ=255) tgTTCAGGGGCGGCGTGGTATATCCCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAACTGCCAGCTTAAAAGACGGGCTTAGCAGTGATGGTTAGCCGCCACGAATGTCCGTCATATTGCATTGCGCAGAAACGCGTGGCACTGAGGGAGTTTTCCGAATTAGTTTTGGGGACCCTTTCCCTGCTTCTGGAGCAAAAGACGAACGGCAAATGCAGTGCTTCCTTg < 1:167349/238‑1 (MQ=255) cATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCAGCTTAAAAGACGGGCTTAGCAGTGATGGTTATCCGCCACGAATGTCCGTCATATTGCATTGCGCAGAAACGCGTGGCACTGAGGGAGTTTTCCGAATTAGTTTTGGGGACCCTTTCCCTGCTTCTGGGGCAAAAGCGGAACGGAAACTGCAGTGGTTCCTTGTAc > 1:726439/1‑238 (MQ=255) cgGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCAGCTTAAAAGACGGGCTTAGCAGTGATGGTTATCCGCCACGAATGTCCGTCATATTGCATTGCGCAGAAACGCGTGGCACTGAGGGAGTTTTCCGAATTAGTTTTGGGGACCCTTTCCCTGCTTCTGGAGCAAAAGACGAACGGCAAATGCAGTGCTTCCTTGTACGACTGCAGCga < 1:585608/238‑1 (MQ=255) cgGTATATCCCAAAGGTGGAGTTCTTATTGGTGGGCCTTGGGAAGTCTTCGAGCAATTGCCAGCTTAAAAGACGGGCTTAGCAGTGATGGTTATCCGCCACGAATGTCCGTCATATTGCATTGCGCAGAAACGCGTGGCACTGAGGGAGTTTTCCGAATTAGTTTTGGGGACCCTTTCCCTGCTTCTGGAGCAAAAGACGAACGGCAAATGCAGTGCTTCCTTGTACGACTGCAGCga < 1:828821/238‑1 (MQ=255) cgGTATATCCCAAAGGGGTATTTCTTATTGGGGGGCCTTCTGAAGGCTTCCAGAAATTGCCAGGTTAAAAGACGGGCTTAGCAGTGATGGTTAGCCGCCACGAATGTCCGTCATATTGCATTGCGCAGAAACGCGTGGCACTGAGGGAGTTTTCCGAATTAGTTTTGGGGACCCTTTCCCTGCTTCTGGAGCAAAAGACGAACGGCAAATGCAGTGCTTCCTTGTACGACTGCAGCga < 1:865172/238‑1 (MQ=255) gTATATCCTAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCGTCGGACAATTGCCAGCTTAAAAGCCGGGCTTAGCAGTGATGGTTATCCGCCACGAATGTCCGTCATATTGCATTGCGCAGAAACGCGTGGCACTGAGGGAGTTTTCCGAATTAGTTTTGGGGACCCTTTCCCTGCTTCTGGAGCAAAAGACGAACGGCAAATGCAGTGCTTCCTTGTACGACTGCAGCgaag < 1:343329/238‑1 (MQ=255) | ATTAAGAATTCTAGGCGACGGGAGTTTTTTAGCCTCCCGGTCGGTCATAGAGAGTCGCCTAGAGTTAAACAGAAGAATTATTTCGCCGCCTGATAGGTCGGCTGGTTGCGAGCATTAACCATGCTGATTAGCGCAATCATTTCCAGCAAGCTGGAAACGCCCATTCACTCA‑CGCACAACCTGAACAGCAGAC‑CAACAAACCATCATGGCATTCGTTCATGGGGAGCGCGGTATATCTCAAAGGGTGATTTCTTATTGGTGGGCCTTCGGAAGGCTTCGAGCAATTGCCAGCTTAAAAGACGGGCTTAGCAGTGATGGTTATCCGCCACGAATGTCCGTCATATTGCATTGCGCAGAAACGCGTGGCACTGAGGGAGTTTTCCGAATTAGTTTTGGGGACCCTTTCCCTGCTTCTGGAGCAAAAGACGAACGGCAAATGCAGTGCTTCCTTGTACGACTGCAGCGAAG > NC_000913/2561058‑2561524 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |