| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,739,684 | T→C | 18.3% | E129G (GAG→GGG) | tyrA ← | fused chorismate mutase T/prephenate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,739,684 | 0 | T | C | 18.3% | 129.6 / 4.6 | 61 | E129G (GAG→GGG) | tyrA | fused chorismate mutase T/prephenate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (29/20); new base C (3/9); total (32/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.22e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CAGGCTACCGCTGTCCGGACCGAACATCGGGTGTAGCCCCAGCACCGGACCATCATGCGCCACCAGCATGGCCTGTAATGGCCCATTTTTCACTGATGCCAGATCGACCAGAATACAATCTTTCGGTAAAGGCGG‑TAATTTGCCAATAACTTGCTCAGTAACGTGGATTGGCACACTAA‑CAATCACCATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTGATAACCCGAGAGGGTCAGCATCTTCTCGAACAGGCGTCCCATCTGACCGCCACCGCCGACGATAACCACCGGACGCAGTGACGGACAAAGTGTTTTAAATCCTTTGTCGTTTTCACTGGAGTAAGATTCACGCATCACCCGACGCAAAACATCCTCAATCAGATCTGGCGGTACACCCAGAGCTTCCGCCTCTGCACGACGCGAGGCCAACA > NC_000913/2739449‑2739912 | cAGGCTACCCGTGGCCGGCCCGAACATCGGGGGTAGCCCCAGCTCCGGGCCATCATGCGCCACCAGCATGGCCTGTAATGGCCCATTTTTCACTGATGCCAGATCGACCAGAATACAATCGTTCGGTAAAGGCGG‑TAATTTGCCAATAACTTGCTCAGTAACGTGGATTGGCACACTAA‑CAATCACCATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCa < 1:198657/239‑1 (MQ=255) cttgccGGACCCAACATCGGGTGTGGCCCCAGCCCCGGACCATCATGCCCCCCCAGCATGGCCTGTAATGGCCCATTTTTCACTGATGCCAGATCGACCAGAATACAATCTTTCGGTAAAGGCGG‑TAATTTGCCAATAACTTGCTCAGTAACGTGGATTGGCACACTAA‑CAATCACCATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCAc < 2:485678/235‑1 (MQ=255) ccGAACAGCGGGTGTAGCGCCAGCACCGGACCATCATGCGCCACCAGCATGGCCTGTAATGGCCCATTTTTCACTGATGCCAGATCGACCAGAATACAATCTTTCGGTAAAGGCGG‑TAATTTGCCAATAACTTGCTCAGTAACGTGGATTGGCACACTAA‑CAATCACCATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTGATAAc < 1:200004/238‑1 (MQ=255) aCATCGGGTGTAGCCCCAGCACCGGACCATCATGCGCCACCAGCATGGCCTGTAATGGCCCATTTTTCACTGATGCCAGATCGACCAGAATACAATCTTTCGGTAAAGGCGG‑TAATTTGCCAATAACTTGCTCAGTAACGTGGATTGGCACACTAA‑CAATCACCATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGc < 1:601600/224‑1 (MQ=255) aCATCGGGTGTAGCCCCAGCACCGGACCATCATGCGCCACCAGCATGGCCTGTAATGGCCCATTTTTCACTGATGCCAGATCGACCAGAATACAATCTTTCGGTAAAGGCGG‑TAATTTGCCAATAACTTGCTCAGTAACGTGGATTGGCACACTAA‑CAATCACCATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTGATAACCCgag < 1:508696/239‑1 (MQ=255) aCAGCGGGTGTAGCCCAAGCACCGGACCATCATGCGCCACCAGCATGGCCTGTAATGGCCCATTTTTCACTGATGCCAGATCGACCAGAATACAATCTTTCGGTAAAGGCGG‑TAATTTGCCAATAACTTGCTCAGTAACGTGGATTGGCACACTAA‑CAATCACCATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTGATAACCCgag < 1:442897/239‑1 (MQ=255) aagcggtggtAGCCCCCGCCCCGGACACTCAGGCGCCCCCAGCATGGCCTGTAATGGCCCATTTTCCACTGATGCCAGATCGACCAGAATACAATCTTTCGGTAAAGGCGG‑TAATTTGCCAATAACTTGCTCAGTAACGTGGATTGGCACACTAA‑CAATCCCCATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGGCAGGTTGCTCCAGAATCCGCACCTGATAACCCgaga < 2:259015/231‑1 (MQ=255) tacccccACCCCCGGCCCCTCATGCCCCACCAGCTTGGCCTGTAATGGCCAATTTTTCCTTGATGCCAGATCGCCCAGAATACAATCTTTCGTGAAAGGCGG‑TAATTTGCCAATACCTTGCTCAGTAACGTGGATTGGCACACTAA‑CAATCACCATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTGATAACCCGAGAGGGTCAGCa < 2:88127/236‑1 (MQ=255) tAGCCCCAGCACCGGACCATCATGCGCCACCAGCATGGCCTGTAATGGCCCATTTTTCACTGATGCCAGATCGACCAGAATACAATCTTTCGGTAAAGGCGG‑TAATTTGCCAATAACTTGCTCAGTAACGTGGATTGGCAACCTAA‑CAATCACCATTCCGGCACCGGCAACAACATCCGCCGCTCGACCCCAGTCATTTTTCTCCCTAATCCCCACCTCTAAACCCCAGACGGGCacc > 2:508696/1‑236 (MQ=255) aGCACCGGACCATCATGCGCCACCAGCATGGCCTGTAATGGCCCATTTTTCACTGATGCCAGATCGACCAGAATACAATCTTTCGGTAAAGGCGG‑TAATTTGCCAATAACTTGCTCAGTAACGTGGATTGGCACACTAA‑CAATCACCATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCCCCAGAATCCGCACCTGATAACCCGAAAGGGGCAGCAtctttcc > 1:728925/1‑236 (MQ=255) gCACCGGACCATCATGCGCCACCAGCATGGCCTGTAATGGCCCATTTTTCACTGATGCCAGATCGACCAGAATACAATCTTTCGGTAAAGGCGG‑TAATTTGCCAATAACTTGTTCAGTAACGGGGATTGGCCAACTAA‑CAAACAACATTCCGGCATCGGCAAACAAATAAGCCCCCCGATCCCCACAACTTTGTTCCAAAACCCACACCCCACAACCCCGGAGGGTCAACATCTTCTCg > 2:804965/1‑239 (MQ=255) cGGACCATCATGCGCCCCCAGCGTGGCCTGGAATGTCCCATTTTTCACTGATGCCAGAACGACCAGAATACAAACTTTGTGTAAAGGCGG‑TAATTTGCCAATAACTTGCTCAGTAACGTGGATTGGCACACTAA‑CAATCACCATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTGATAACCCGAGAGGGTCAGCATCTTCTCGAACa < 2:108774/239‑1 (MQ=255) gACCATCATGCGCCACCAGCATGGCCTGTAATGGCCCATTTTTCACTGATGCCAGATCGACCAGAATACAATCTTTCGGTAAAGGCGG‑TAATTTGCCAATAACTTGCTCAGTAACGTGGATTGGCACACTCA‑CAATCACCATTCCGGCATCGGCAACAAATTCAGCCGCTCGATCCCAGCCATGTTGCTCCCGAATCCGCACCTGGTAACCCGCGAGGGCCACCAcctttccggaaagg > 1:86471/1‑229 (MQ=255) gACCATCATGCGCCACCAGCATGGCCTGTAATGGCCCATTTTTCACTGATGCCAGATCGACCAGAATACAATCTTTCGGTAAAGGCGG‑TAATTTGCCAATAACTTGCTCAGTAACGTGGATTGGCACACTAA‑CAATCACCATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTGATAACCCGAGAGGGTCAGCACCTTCTCGAACAg > 1:150073/1‑238 (MQ=255) tcatGCGCCACCAGCATGGCCTGTAATGGCCCATTTTTCACTGATGCCAGATCGACCAGAATACAATCTTTCGGTAAAGGCGG‑TAATTTGCCAATAACTTGCTCAGTAACGTGGATTGGCACACTAA‑CAATCACCATTCCGGCCTCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCACCCCCTCATAACCCCAGAGGGTAAGCAACTTCTCGAACAAGCGTcc > 2:721743/1‑239 (MQ=255) tcatGCGCCACCAGCATGGCCTGTAATGGCCCATTTTTCACTGATGCCAGATCGACCAGAATACAATCTTTCGGTAAAGGCGG‑TAATTTGCCAATAACTTGCTCAGTAACGTGGATTGGCACACTAA‑CAATCACCATTCCGGCATCGGCAACAAAATCAACCGCCCCATCCCAGCCCTGTTTCTCCACAAACCGCCCCCGATAACCCGAGAGGGTCCACATCTTCTCaaaaaaggacc > 2:149401/1‑230 (MQ=255) cgcCACCAGCATGGCCTGTAATGGCCCATTTTTCACTGATGCCAGATCGACCAGAATACAATCTTTCGGTAAAGGCGG‑TAATTTGCCAATAACTTGCTCAGTAACGTGGATTTGCACACTCA‑CAATCACCATTCCGGCATCGGCAACAATATTAGCCGCTCGATCCCAGTCATGTTGCCCCCGAATCCCCACCTGATAACCCGCGAGGGTCAGCATCTTCTCGACCAGGCGTCCCa > 1:701346/1‑236 (MQ=255) caccaGCATGGCCTGTAATGGCCCATTTTTCACTGATGCCAGATCGACCAGAATACAATCTTTCGGTAAAGGCGG‑TAATTTGCCAATAACTTGCTCAGTAACGTGGATTGGCACACTAA‑CAATCACCATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTGATAACCCGAGAGGGt < 1:537111/207‑1 (MQ=255) gCCTGTAATGGCCCATTTTTCACTGATGCCAGATCGACCAGAATACAATCTTTCGGTAAAGGCGG‑TAATTTGCCAATAAATTGCTCAGAAACGTGGATTGGCCCACTAA‑CAAACACAATTCCGGCATTGGCAACAATATAAGACGCCCGATCCCAGTCATGTTGTTCCCAAATCCGAACCTGGTAAACCGTGAGGGCAAGCATCTTCTACAACAGTCGGCCCCCCTGaacgccaccgcc > 1:66613/1‑239 (MQ=255) aagggCCCATTTTTCACGGAGGCCAGATCGACCAGAATACAATCTTTCGGTAAAGGCGG‑TAATTTGCCAATAACTTGCTCAGTAACGTGGATTGGCACACTAA‑CAATCCCCATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTGATAACCCGAGAGGGTCAGCATCTTCTCGAACAGGCGTCCCATCTGACCGCCACCGCCGACGAt < 1:477131/236‑1 (MQ=255) aaTGGCCCATTTTTCACTGATGCCAGATCGCCCAAAATAAAATCTTGCGGTAAAGGCGG‑TAATTTGCCAATAACTTGCTCAGAAACGTGGATTGGCACACTAA‑CAATCCCCATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTGATAACCCGAGAGGGTCAGCATCTTCTCGAACAGGCGTCCCATCTGACCGCCACCGCCGACGAt < 1:94817/239‑1 (MQ=255) aaTGGCCCATTTTTCACTGATGCCAGATCGACCAGAATACAATCTTTCGGTAAAGGCGG‑TAATTTGCCAATAACTTGCTCAGTAACGTGGATTGGCACACTAA‑CAATCACCATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCCCCCGAATCCCCACCTGTTAACCCGACAAGGTCCGCAACTTTTCGAACAGGCGTCCCACCCTAcccccaccccccacagc > 2:734188/1‑236 (MQ=255) cccATTTTTCACTGATGCCAGATCGACCAGAATACAATCTTTCGGTAAAGGCGG‑TAATTTGCCAATAACTTGCTCAGTAACGTGGATTGGCACACTAA‑CAATCACCATTTCGGCATCGGCAAACATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTGATAACCCGAGAGGGGCAACCACTTCTCGAAAAGGCGGCCCATCCGACCCCCCCCCCCGACGATaaac > 2:751510/1‑236 (MQ=255) cccATTTTTCACTGATGCCAGATCGACCAGAATACAATCTTTCGGTAAAGGCGG‑TAATTTGCCAATAACTTGCTCAGTAACGTGGATTGGCACACTAA‑CAATCACCATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTGATAACCCGAGAGGGTCAGCATCTTCTCGAACAGACGTCCCACCTGACCGCCCCCGCCACCGAGAacc > 1:310678/1‑238 (MQ=255) ttCACTGATCCCAGACCGACAAGAATCCAATCTTTCGGT‑AAGGCGGTTATTTTGCCAATAACTTGGTCAGTACCTGGGATTGGCACACTAA‑CAATCCCCTTCCCGGACTCGGCAAAAAGACCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTGATAACCCGAGAGGGTCAGCATCTTCTCGAACAGGCGTCCCATCTGACCGCCACCGCCGACGATAACCACCGGACg < 2:701346/239‑1 (MQ=255) tgtGCCAAATCCACCAAAATAACATTTTTCGGTAAAGGGGG‑TAATTTGCAAAAAACTTGCTAAGTAACTTGGTTTGGCACCATAA‑CAATCCCCATCCCGGCACCGGCAACAATACCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTGATAACCCGAGAGGGTCAGCATCTTCTCGAACAGGCGTCCCATCTGACCGCCACCGCCGACGATAACCACCGGACGCAGTGa < 2:150073/237‑1 (MQ=255) gctGCCAAATCGCCCAAAAAAAAATCTTTGGGAAAGGGCGT‑ATATTTCCAAATACTTGGCCCATAAACG‑GGGTTGGCCCCCCAACCAACCCCCTTCCCGGCATCGGAAAAAACATCAGCCCCTCGACCCCGGTCATGTTGCCCCAAAATCCGCACCTGATAACCCGAGAGGGTCAGCATCTCCTCGAACAGGCGTCCCATCTGACCGCCACCGCCGACGATAACCACCGGACGCAGTGa < 2:804204/237‑1 (MQ=255) gATCGACCAGAATACAATCTTTCGGTAAAGGCGG‑TAATTTGCCAATAACTTGCTCAGTAACGTGGATTGGCACACTAA‑CAATCACCATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTGATAACCCGAGAGGGTCAGCATCTTCTCGAAAAGGCGTCCCATCTGCCCGCCACCGCCGACGATAACACACGGACGCAGTGACGGACaa > 1:328114/1‑239 (MQ=255) ctcacaaaaTACATTCTTTGTGAAAAGGGCG‑TAATTTTCCAAATACGTGCCTAATAACGGGGTTTGGCACTCTAA‑CACACCCCATCCCGGCCTCGACAACAATCCCCGCCGGCCGATCCCATTCATGTTTCTCCAGAACCCGCCCCGAATAACCGGGGAGGGTCAGCATCTTCTCGAACAGGCTTCCCATCTGACCGCCACCGCCGACGATAACCACCGGACGCAGTGACGGACAAAgt < 2:681195/232‑1 (MQ=255) cGACCAGAATCCAATCTTTCGGTAAAGGCGG‑TAATTTGCCAATAACTTGCTCAGTAACGTGGATTGGCCCACTAA‑CAATCCCCATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTGATAACCCGAGAGGGTCAGCATCTTCTCGAACAGGCGTCCCATCTGACCGCCACCGCCGACGATAACCACCGGACGCAGTGACGGACAAAgt < 1:688886/239‑1 (MQ=255) ttCGGTAAAGGCGG‑TAATTTGCCAATAACTTGCTCAGTAACGTGGATTGGCACACTAA‑CAATCACCATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTTATAACCCGAGAGGGTCAGCATCTTCTCGAACAGGCGTCCCATCTGACCGCCACCGCCGACGATAACCACCGGACGCAGGGACGGACAAAAGGTTTTAAATCCTTTTTc > 1:718527/1‑239 (MQ=255) ttCGGTAAAGGCGG‑TAATTTGCCAATAACTTGCTCAGTAACGTGGATTGGCACACTAA‑CAATCACCATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTGATAACCCGCGAGGGTCAGCATCTTCTCGAACAGGCGTCCCATCTGACCGCCACCGCCGACGATAACCACCGGACGCAGGGACGGACAAAGGGTTTTAAATCCtttt > 1:547122/1‑236 (MQ=255) ttCGGTAAAGGCGG‑TAATTTGCCAATAACTTGCTCAGTAACGTGGATTGGCACACTAA‑CAATCACCATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTGATAACCCGAGAGGGTCAGCATCTTCTCGAACAGGCGTCCCATCTGACCGCCACCGCCGACGATAACCACCGGACGCAGTGACGGACAAAGTGGTTTAAATCCTTTGTc > 1:19056/1‑239 (MQ=255) ttCGGTAAAGGCGG‑TAATTTGCCAATAACTTGCTCAGTAACGTGGATTGGCACACTAA‑CAATCACCATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTGATAACCCGAGAGGGTCAGCATCTTCTCGAACAGGCGTCCCATCTGACCGCCACCGCCGACGATAACCACCGGAAGCAGTGCCGGACAAAGGGTTTTAAATCCTTTGTc > 1:576237/1‑239 (MQ=255) ttCGGTAAAGGCGG‑TAATTTGCCAATAACTTGCTCAGTAACGTGGATTGGCACACTAA‑CAATCACCATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTGATAACCCGAGAGGGTCAGCATCTTCTCGAACAGGCGTCCCATCTGACCGCCACCCCCGACGATAACCACCGGACGCCGTGACGGCCCAAGGGTTTTAAATCCtttt > 1:540385/1‑236 (MQ=255) ttCGGTAAAGGCGG‑TAATTTGCCAATAACTTGCTCAGTAACGTGGATTGGCACACTAA‑CAATCACCATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTGATAACCCGAGAGGGGCAGCATCTTCTCGAACAGGCGTCCCATCTGACCGCCACCGCCGACCGTAACCACCGGACCCAGGGACGGCCAAAGGGTTTTTAATCCTTTTTc > 1:395450/1‑239 (MQ=255) aggagttattttGCCAATACCTTGCCCAGTAACTTGGTTTGGCACACTAA‑CAATCCCCATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTCCTCCAGAATCCGCCCCTGATAACCCGAGAGGGTCAGCATCTTCTCGAACAGGCGTCCCATCTGACCGCCACCGCCGACGATAACCACCGGACGCAGTGACGGACAAAGTGTTTTAAATCCTTTGTCGTTTTCAc < 1:819057/230‑1 (MQ=255) aaTTTGCCAATAACTTGCTCAGTAACGTGGATTGGCACACTAA‑CAATCACCATTCCGGCATCGGCAACAATATCAGCCGCTCGATTCCAGTCATGTTGCTCCAGAATCCGCACCTGATAACCCGAGAGGGTCAGCATCTTCTCGAACAGGCGGCCCATCTGACCGCCCCCGCCTGCGAAAACCACCGGACGCAGGGCCGGACAAAGGGTTTTAAAACCTTTGTCGTTTTTCCTGGAGTa > 2:880572/1‑239 (MQ=255) aGTAACGTGGATTGGCACACTAA‑CAATCACCATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTGATAACCCGAGAGGGTCAGCATCTTCTCGAACAGGCGTCCCATCTGACCGCCACCGCCGACGATAACCACCGGACGCAGTGACGGACAAAGGGTTTTAAATCCTTTGTCGGTTTCACTGGAGTAAAATTCACCCATAAcccac > 2:772335/1‑236 (MQ=255) tAACGTGGATTGGCACACTAA‑CAATCACCATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTGATAACCCGAGAGGGTCAGCATCTTCTCGAACAGGCGTCCCATCTGACCGCCACCGCCGACGATAACCACCGGACGCAGTGACGGACAAAGTGTTTTAAATCCTTTGTCGTTTTCACTGGAGTAAGATTCACGCATCACCCGACGc > 1:871097/1‑239 (MQ=255) aaagTGGATTGGCCCCCAAA‑CAATCCCCATTCCGGCATCGGCAACAATACCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTGATAACCCGAGAGGGTCAGCATCTTCTCGAACAGGCGTCCCATCTGACCGCCACCGCCGACGATAACCACCGGACGCAGTGACGGACAAAGTGTTTTAAATCCTTTGTCGTTTTCACTGGAGTAAGATTCACGCATCACCCGAc < 1:149401/233‑1 (MQ=255) aaCGTGGATTGGCACACTAA‑CAATCACCATCCCGGAATCGGCAACAATATCAGCCGCTCGATCCCAGTCATTTTGCTCCAGAATCCGCACCTGATAACCCGAGAGGGCCAGCATCTTCTCGAACAGGCGTCCCATCTGACCGCCACCGCCGACGATAACCACCGGACGCAGTGACGGACAAAGTGTTTTAAATCCTTTGTCGTTTTCACTGGAGTAAGATTCACGCATCACCCGAc < 1:721743/236‑1 (MQ=255) gtgttttGGCCCCCAAA‑CACTCCCCATCCCGACATCGCCAACAATCACTGCCCCCCGACCCCGGTCATGTGGCCCAAAAACCCCCCCCTGATACCCCGAGAGGGTCAGCATCTACTCGAACAGGCGTCCCATCTGACCGCCTCCGCCGACGATAACCACCGGACGCAGTGACGGACAAAGTGTTTTAAATCCTTTGTCGTTTTCACTGGAGTAAGATTCACGCATCACCCGACGCaaaa < 2:196698/234‑1 (MQ=255) tGGATTGGCACACTAA‑CAATCACCATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTGATAACCCGAGAGGGTCAGCATCTTCTCGAACAGGCGTCCCATCTGACCGCCACCGCCGACGATAACCACCGGACGCCGTGACGGACAAAGTGTTTTAAATCCTTTGTCGTTTTAACTGGAGGAAGATTCAAGAATAACCCGACGAAAAAc > 2:297212/1‑239 (MQ=255) cccacTCA‑CCATCCCCCTTCCGGCCTCGGCAAAAATTCCAGCCGCCCGCTCCCAGTAATGTTGCCCAAGAACCCGCACCTGATACCCCGAGAGGGTCAGCATCTTCCCGAACAGGCGTCCCATCTGACCGCCACCGCCGACGATAACCACCGGACGCAGTGACGGACAAAGTGTTTTAAATCCTTTGTCGTTTTCACTGGAGTAAGATTCACGCATCACCCGACGCAAAACATCCTCaa < 2:395450/237‑1 (MQ=255) ccccTAA‑CAATCCCCTTTCCGCCTGCGGCAAAAATACCCGCCGCGCGATCCCAGTCATGTTGCCCCAGAATCCCCCCCTGATACCCCGAGAGGGTCATCATCTTCTCGAACAGGCGCCCCATCTGACCGCCACCGCCGACGATAACCACCGGACGCAGTGACGGACAAAGTGTTTTAAATCCTTTGTCGTTTTCACTGGAGTAAGATTCACGCATCACCCGACGCAAAACATCCTCAAt < 2:728925/236‑1 (MQ=255) cTAA‑CAATCACCATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTGATAACCCGAGAGGGTCAGCATCTTCTCGAACAGGCGTCCCATCTGACCGCCACCGCCGCCGTTAACCACCGGACGCAGGGACGGACAAAGTGTTTTAAATCCCTTGTCGTTTTCACTGGAGTAAAATTCACGCACCACCCGCCGCAAAAAATCCCCaaaaag > 2:351270/1‑235 (MQ=255) a‑CAATCACCATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTGATAACCCGAGAGGGTCAGCATCTTCTCGAACAGGCGTCCCATCTGACCGCCACCGCCGACGATAACCACCGGACGCAGTGACGGACCAAGCGGTTTAAATCCTTTGTCGTTTTCACTGGAGTAAGATTCCCGCATCAACCCACCCAAAACAACCCCAAtaaaaca > 2:155886/1‑233 (MQ=255) aaTCACCATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTGATAACCCGAGAGGGTCAGCATCTTCTCGAACAGGCGTCCCATCTGACCGCCACCGCCGACGATAACCACCGGACGCAGTGACGGACAAAGGGTTTTAAATCCTTTGTCGTTTTCCCTGGAGTAAGATTAACGCCTAACCCGACGCAAAACATCCTCAAACaacacgg > 2:619202/1‑233 (MQ=255) aCCATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTGATAACCCGAGAGGGTCAGCATCTTCTCGAACAGGCGTCCCATCTGACCGCCACCGCCGACGATAACCACCGGACGCAGTGACGGACAAAGTGTTTTAAATCCTTTGTCGTTTTCACTGGAGTAAGATTCACGACTCACCCCACGCAAAACATCCTCAATCAGACCTGGCgg > 2:135259/1‑239 (MQ=255) ctttCCGGCACGGGCAACAATATCAGCCGCTCGATCCCATTCAGGTTGCCCCAGAACCCGCACCTGATAACCCGAGAGGGTCAGCATCTTCTCGAACAGGCGTCCCATCTGACCGCCACCGCCGACGATAACCACCGGACGCAGTGACGGACAAAGTGTTTTAAATCCTTTGTCGTTTTCACTGGAGTAAGATTCACGCATCACCCGACGCAAAACATCCTCAATCAGATCTGGCGGTa < 1:351270/237‑1 (MQ=255) cATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTGATAACCCGAGAGGGTCAGCATCTTCTCGAACAGGCGTCCCATCTGACCGCCACCGCCGACGATAACCACCGGACGCAGTGACGGCCAAAGTGTTTTAAATCCTTTGTCGTTTTCACTGGCGTAAGATTCACGCATCACCCGACGCAAAAAAACCTCAATCAGaccggagggaa > 2:337782/1‑229 (MQ=255) cATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTGATAACCCGAGAGGGTCAGCATCTTCTCGAACAGCCGCCCCATCTGACCGCCACCGCCGACGATAACCACCGGACGCAGGGACGGACAAAGGGTTTTAAATCCTTTGTCGTTTTCACAGGAGTAAGATTCAAGACACACACCACCCAAAACAACCCCATCCAGATCGGGCggaa > 2:717487/1‑237 (MQ=255) cATTCCGGCAACGGCAACAATACCCGCCGCCCGATCCCAAGCATGTTGCCCCAGAATCCGCACCTGATAACCCGAGAGGGTCAGCATCTTCTCGAACAGGCGTCCCATCTGACCGCCACCGCCGACGATAACCACCGGACGCAGTGACGGACAAAGTGTTTTAAATCCTTTGTCGTTTTCACTGGAGTAAGATTCACGCATCACCCGACGCAAAACATCCTCAATCAGATCTGGCGGTa < 1:804965/239‑1 (MQ=255) ttCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTGATAACCCGAGAGGGTCAGCATCTTCTCGAACAGGCGTCCCATCTGACCGCCACCGCCGACGATAACCACCGGACGCAGTGACGGACAAAGGGTTTTAAATCCTTTGTCGTTTTCACTGGAGTAAGATTCACGCATCACCCGCCCCCAAACATCCCCAATCAAATCTGGCGGGac > 2:772023/1‑238 (MQ=255) ggCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCCCCTTAGAACCCGAGAGGGTCAGCATCTTCTCGAACAGGCGTCCCATCTGACCGCCACCGCCGACGATAACCACCGGACGCAGTGACGGACAAAGTGTTTTAAATCCTTTGTCGTTTTCACTGGAGTAAGATTCACGCATCACCCGACGCAAAACATCCTCAATCAGATCTGGCGGTACACCCa < 1:832329/239‑1 (MQ=255) cctgggCAAAATTATCAGCCGCTCGATCCCAGTCATGTTTCCCCAAAATCCGCCCCTGATACCCCGAGGGGGTCCGCATCTTCTCGAACAGGCGTCCCATCTGACCGCCACCGCCGACGATAACCACCGGACGCAGTGACGGACAAAGTGTTTTAAATCCTTTGTCGTTTTCACTGGAGTAAGATTCACGCATCACCCGACGCAAAACATCCTCAATCAGATCTGGCGGTACACCCaga < 2:208359/235‑1 (MQ=255) tCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTGATAACCCGAGAGGGTCAGCATCTTCTCGAACAGGCGTCCCATCTGACCGCCACCGCCGACGATAACCACCGGACGCAGTGCCGGACAAAGGGTTTTAAATCCTTTGTCGTTTTCACTGGAGTACGATTCAGCCATCACCCGACGCAAACCATTCCCAATCAACTCTGGCGGTAGACACAAAGCTTCCCCCTCTGCacaaccag > 2:385263/1‑236 (MQ=255) gaacccAGGCATGGTGCCCCAGAATCCGCACCTGATAACCCGAGAGGGTCAGCATCTTCCCGAACAGGCGTCCCATCTGACCGCCACCGCCGACGATAACCACCGGACGCAGTGACGGACAAAGTGTTTTAAATCCTTTGTCGTTTTCACTGGAGTAAGATTCACGCATCACCCGACGCAAAACATCCTCAATCAGATCTGGCGGTACACCCAGAGCTTCCGCCTCTGCACGACGCGAg < 1:535444/236‑1 (MQ=255) cctatCATGTTGCCCCAGAACCGCCCCCTGATAACCCGGAGGGGTCAGCATCTTCTCGACCAGGCGTCCCATCGGACCGCCACCGCCGACGATAACCACCGGACGCAGTGACGGACAAAGTGTTTTAAATCCTTTGTCGTTTTCACTGGAGTAAGATTCACGCATCACCCGACGCAAAACATCCTCAATCAGATCTGGCGGTACACCCAGAGCTTCCGCCTCTGCACGACGCGAGGcta < 1:332655/235‑3 (MQ=255) gTCATGTTGCTCCAGAATCCGCACCTGATAACCCGAGAGGGTCAGCATCTTCTCGAACAGGCGTCCCATCTGACCGCCACCGCCGACGATAACCACCGGACGCAGTGACGGACAAAGTGTTTTAAATCCTTTGTCGTTTTCACTGGAGTAAGATTCACGCATCACCCGACGCAAAACATCCTCAATCAGATCTGGCGGTACACCCAGAGCTTCCGCCCCCTCCCGACCCCAGGCCacaa > 1:294585/1‑236 (MQ=255) | CAGGCTACCGCTGTCCGGACCGAACATCGGGTGTAGCCCCAGCACCGGACCATCATGCGCCACCAGCATGGCCTGTAATGGCCCATTTTTCACTGATGCCAGATCGACCAGAATACAATCTTTCGGTAAAGGCGG‑TAATTTGCCAATAACTTGCTCAGTAACGTGGATTGGCACACTAA‑CAATCACCATTCCGGCATCGGCAACAATATCAGCCGCTCGATCCCAGTCATGTTGCTCCAGAATCCGCACCTGATAACCCGAGAGGGTCAGCATCTTCTCGAACAGGCGTCCCATCTGACCGCCACCGCCGACGATAACCACCGGACGCAGTGACGGACAAAGTGTTTTAAATCCTTTGTCGTTTTCACTGGAGTAAGATTCACGCATCACCCGACGCAAAACATCCTCAATCAGATCTGGCGGTACACCCAGAGCTTCCGCCTCTGCACGACGCGAGGCCAACA > NC_000913/2739449‑2739912 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |