| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,113,957 | T→A | 16.4% | L132F (TTA→TTT) | pppA ← | bifunctional prepilin leader peptidase/ methylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,113,957 | 0 | T | A | 16.4% | 130.0 / 2.3 | 62 | L132F (TTA→TTT) | pppA | bifunctional prepilin leader peptidase/ methylase |
| Reads supporting (aligned to +/- strand): ref base T (40/9); new base A (5/6); total (47/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.09e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.53e-01 | |||||||||||
CGCCCATGCCTAATGCTTCTTTACGCAGAACTATTCCGGCTA‑TCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCC‑TGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCGGATAACGCTTGCTGATTTTCGCCTGACAGTCGCGGCAGCGCCCTTTGAGCATCAGCCAGGAGAACAGCGGAATATTGTCACGTATCCGGATGGTCTGCTGACAATGTGGGCAGTGCGAACGCGGTAGCGCAAGGCTTATTTTTGACTG > NC_000913/3113731‑3114193 | cGCCCATGCCTAATGCTTCTTTACGCAGAACTATTCCGGCTA‑TCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCC‑TGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGGTATCGAGGTCGATGACACTCGCGG‑CACTCACCCAGCCGGGTACTATCATCAc > 1:784635/1‑238 (MQ=255) cccATGCCTAATGCTTCTTTACGCAGAACTATTCCGGCTA‑TCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCC‑TGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGCTCGAGGTCGGTGACACTCCCGG‑CAAACAGACACACGGGAAAAatcataaacga > 2:210113/1‑233 (MQ=255) cccATGCCTAATGCTTCTTTACGCAGAACTATTCCGGCTA‑TCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCC‑TGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCCCGG‑CAATCAGCAAGGGGGGAAAAatcaaacccc > 2:99630/1‑232 (MQ=255) cccATGCCTAATGCTTCTTTACGCAGAACTATTCCGGCTA‑TCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCC‑TGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGGCGATGACACCCGCGG‑CAAACAGCCAGGCGGATAAAAAAATCAcccc > 2:368596/1‑237 (MQ=255) cccATGCCGAATGCTTCTTTACGCAGAACTATTCCGGCTA‑TCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCC‑TGTCCACAATACGCCCTGAGTAAAAACACCGGGCAGCCATTGGTGATCGAGGTCGATGACACACGCGG‑CAATCAGCCAGGCGGATAATATCATCACCg > 1:55589/1‑238 (MQ=255) aTGCCTAATGCTTCTTTACGCAGAACTATTCCGGCTA‑TCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCC‑TGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGAAACTCGCGG‑CAATAAGCCAGGGGGTGAATATCCTCACCGccc > 1:357387/1‑237 (MQ=255) gCCTAATGCTTCTTTACGCAGAACTATTCCGGCTA‑TCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCC‑TGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGc > 1:154419/1‑238 (MQ=255) ttttttttACGCAG‑ACTTTTCCGCGTATTCCAACGCAGAGAGAAAAAGGTGACAAACCCCCCCAGGCCGCCGGTGACGGCATCTTGTAGCGTGGGGGAACTCTGCTGCGCCCATGCCGCAATCAGTCC‑TGCCCACAATACGCCCTGAGTAAAACCATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATcc < 2:310881/234‑1 (MQ=255) cttTACGCAGAACTATTCCGGCTA‑TCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCC‑TGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGCCGGGAAATATCATCACCGCCAGCCCCCATCCACtt > 1:158801/1‑239 (MQ=255) cttTACGCAGAACTATTCCGGCTA‑TCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCC‑TGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGCCGATGACAATCGCGG‑CAATCAGCCAGGCGGTAAATATCATCACCGCCAGCCCCCATCCACtt > 1:31542/1‑239 (MQ=255) cttTACGCAGAACTATTCCGGCTA‑TCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCC‑TGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGGGATCGAGGTCGATGACACTCGCGG‑CAATCAGCCAAGCGGTAAATATCATCACCCCCAGCCCCCATCCACtt > 1:731934/1‑239 (MQ=255) gCAGAATTATTCCGGCTA‑TCCAACGCAGAGAGTAAAAAGGGATAAACCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCC‑TGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGc < 1:672072/239‑1 (MQ=255) aaCTATTCCGGCTA‑TCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCC‑TGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCCCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCCCTTTCTGGccag > 1:20598/1‑238 (MQ=255) gCTA‑TCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCC‑TGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCg > 1:131660/1‑238 (MQ=255) gCTA‑TCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGAATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCC‑TGTCCACAATACGCCCTGAGGAAAAAAATCGTGCAGCCAGTGGGGACCAGGGGCGCGGCAATCCGCGG‑CATACAGCCAGGCGGTTAATATCATAACCGCCCCCCCCCCACCCATTACTGGgcaaaccaaaacca > 2:686632/1‑232 (MQ=255) cttcccaagcaagagagTAAAAGGTGAAAAACCCCACCAGGCCGCCGGTGACTGCATCTTGTAGCGTGAGGGGCCCCGGCGGCGCCCATGCCGCAATCAGTCC‑TGTCCAAAATCCGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGc < 1:587484/227‑1 (MQ=255) tCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCC‑TGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGTCGGTGAATATAATCACCGCCAGCCCCCATCCACTTTCTGGCCCGCCCAGACTCGCCAGc > 1:753157/1‑239 (MQ=255) tCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCC‑TGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGc > 1:245551/1‑239 (MQ=255) aacccaagagatAAAAAAGGTAAAACTCCCCCCAGGCCGCCGGTTACTGCATTGTGTCGCGGGGGGGCACTCGCCCGCCCCCATCCCGCAATC‑GTCCTTGCCCAAAACACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGCCGATGACCCTCGCGG‑CAATCAGCCAGGCGGAAAATACCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCaa < 2:154419/233‑1 (MQ=255) agTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCC‑TGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGt > 1:103153/1‑239 (MQ=255) tAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCC‑TGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGAATCGCCAGCAAAAACG‑AAGTGCt > 1:304622/1‑239 (MQ=255) aaaaaaGTGATAAATCCCCCCGGGCACCGGGTAACTGCATTTTGTAGCGGGGGCGGCCTCTGCGGCGCCCAGCCCCCAATCATTCC‑TGTCCCAAATCCCCCCTGAGTAAAAACATGGGGCACCCATGGGTGATCGAGGGCGATGACACCCGCGG‑CACTCACCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTg < 2:460983/237‑1 (MQ=255) aaaaaGTGATAAACCCCACCGGGACGCCGGTGACCGCATCTTGTAGGGTGAGCGGACTTTGCTGCGCCCATGCCGCAATCATTCC‑TGTCCACAATCCGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGACCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCt < 1:368596/239‑1 (MQ=255) aaaaaGTGATAAACCCCACCAGGACCCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCGGCTGCGCCAATGCCGCAAGCAGTCC‑GGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCACCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTg < 1:99630/237‑1 (MQ=255) gATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCC‑TGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCCCCGCCAGCCCCCATCCACTTTCTGGCCAGCCCAGACTCGCCAGCAAAAAAGCAAGTGCGGCCaaaa > 1:600686/1‑237 (MQ=255) gATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCC‑TGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATa > 1:507378/1‑239 (MQ=255) gATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCC‑TGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGGGCTGTCAATa > 1:467535/1‑239 (MQ=255) gATAAATCCCACCAGGACGCCGGTGACCGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCC‑TGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCCCTTTCTGGCCAGACCAGACTCGCCCGCCAAAAAGCAAGGGCTGTCAATa > 1:290102/1‑239 (MQ=255) tCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCC‑TGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCATCAAAAAAGCAAGCGCTGTCAATAACTcc > 1:496394/1‑238 (MQ=255) gcccccGGTGAGTTCATTTTTGAGCGGGAGCGGCCTCTGCTGCCCCCAGCCCGAAACGGGCCC‑TGTCCACAATACGCCTGGAGTAAAAACACCGGGCAGCCATTGGAGATCGAGGTCGATGA‑ACCCGGGGACAATCAGCAAGGCGGAAAATACACTCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCGGAt < 2:73179/235‑1 (MQ=255) cGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCC‑TGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCCGCAAAAAAGCAAGTGCTTTCAATAACTCCACCACCGGCTa > 1:638010/1‑238 (MQ=255) cGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCC‑TGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCCCTTTCTGGCCAGACCAGACCCCCCAGCAAAAAACAAAAGGCTGGCATAAACTCCACCAGCggtaaca > 2:804493/1‑232 (MQ=255) cGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCC‑TGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGG‑CAATCAGCAAGGCGGATAATATCATCACCGCCAGCCCCCATCCACGTTCTGGCCAGACCAGACTCGCCCGCAAAAAAGCAAATGCTGTCAATAACCACACCAGCGGGTAACgg > 2:380637/1‑238 (MQ=255) cGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCC‑TGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGCCACTCGCGG‑CCATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCACAAAAGCAAGTGCTGTCAATAACTCCACCCGCGGATAACGCTTGCTGATTTTCGCCTGAc > 1:33932/1‑239 (MQ=255) tGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCC‑TGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGAGCTGTCAATaa > 1:652318/1‑199 (MQ=255) cccATGCCGCAATCAGTCC‑TGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCCCTTTCTGGCCCGACCAGACTCCCCACCAAAAAACAAAGAGCTGTCAATAACTCCACCAGCGGAAAACGCTGGCGGATTTTCGCCTGACAGTCCAGGCacaccccattc > 2:81317/1‑229 (MQ=255) aTGCCGCAATCAGTCC‑TGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCACAAAAGCCAGTGCTGTCAATAACTCCACCAGCGGAAAAAGCTTGCTGATTTTCGCCTGCCCATCGGGGCGGCCCCCTTTGacc > 2:739675/1‑237 (MQ=255) gCCGCAATCAGTCC‑TGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAg > 1:307353/1‑160 (MQ=255) gCCGCAATCAGTCC‑TGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCGGATAACGCTGGCTGATTTTCGCCTGACAGTCCCGGCAGCGCCCTTTGAGCa > 1:528980/1‑238 (MQ=255) tCC‑TGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCCCCAGCGGATAACGCTTGCTGATTTTCGCCTGCCATCCACGGCAGCGCCCTTTGAGGATCAGCCAGgaga > 1:715692/1‑239 (MQ=255) gtcccaaaaaCGCCATAAGTAAAACCGTCGGGCCGCCTTTGGTGACCGAGGTCGATGACCCTCGCGG‑CAATCACCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCGGATAACGCTTGCTGATTTTCGCCTGACAGTCGCGGCAGCGCCCTTTGAGCATCAGCCAGGAGAACAg < 1:229914/230‑1 (MQ=255) gcccAAAATACCCCCTGAGTAAAAACAGCGGGCACCCATTGGTGACCGAGGTCGATGACACCGGCGG‑CAAGCGACCAGGCGGAAAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACACCACCAGCGGATAACGCTTGCTGATTTTCGCCTGACAGTCGCGGCAGCGCCCTTTGAGCATCAGCCAGGAGAACAg < 1:802082/237‑1 (MQ=255) gCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCGGATAACGCTTGCTGATTTTCGCCTGACAGTCGCGGCAGCGCCCTTTGTGCACCAGCCAGGCGACAAGCGGAATATTg > 1:457969/1‑238 (MQ=255) gAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAGGCAAGTGCTGTCAATAACTCCACCAGCGGATAACGCTTGCTGATTTTCGCCTGCCAGTCGCGGCAGCGCCCTTTGAGCATAAGCCAGGAGAAAAGCGGAAAATTTTCAcct > 2:787783/1‑237 (MQ=255) gAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCGGATAACGCTTGCTGATTTTCGCCTGACAGTCGCGGCAGCGCCCTTTGAGCATCAGCCAGGAGAACAGCGGAATATTGTTACga > 1:558029/1‑238 (MQ=255) gAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCGGATAACGCTTGCTGATTTTCGCCTGACAGTCGCGGCAGCGCCCTTTGAGCATCAGCCAGGAGAACAGCGGAATATTGTCACGt > 1:727898/1‑239 (MQ=255) gAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCAACAGCGGATAACGCTTGCTGATTTTCGCCTGACAGTCGCGGAAGCGCCCTTTGAGCATCAGCCAGGAGAACACCGGAAAATGGTCACga > 1:235747/1‑238 (MQ=255) gAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGGCGATGACACTTGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCACCGGATAACGCTTGCTGATTTTCGCCTGACAGTAGCGCCAACGCCCGTTTAGCTTAAGCCAGGAAGACAGAGGCATATTTACACga > 1:573661/1‑238 (MQ=255) aCAGCGGGCCGCCATTGGTGAGCGAGGTCGAGGCCACTCGCGG‑ACATCAGCAAGGCGGATAATATCATCCCCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCGGATAACGCTTGCTGATTTTCGCCTGACAGTCGCGGCAGCGCCCTTTGAGCATCAGCCAGGAGAACAGCGGAATATTGTCACGTATCCGGAt < 1:695992/239‑1 (MQ=255) tCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCGGATAACGCTTGCTGATTTTCGCCTGCCAGTCCCGGCAGCGCCCTTTGAGCCTCAGCCCGGGGAACAACGGAATATTGTAACGTATCCGGATgg > 1:407318/1‑238 (MQ=255) tCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCGGATAACGCTTGCTGATTTTCGCCTGACAGTCGCGGCAGCGCCCTTTGAGCATCAGCCAGGAGAACAGCGGAATATTGTCAc > 1:778744/1‑226 (MQ=255) tCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCGGATAACGCTTGCTGATTTTCGCCTGACAGTCGCGGCAGCGCCCTTTGAGCATCAGCCAGGCGAACAGCCGACTATTTTCACGAATCCGGATGGTCTTGTGACAATGTGGGCa > 1:382748/1‑239 (MQ=255) tCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCGGATAACGCTTGCTGATTTTCGCCTGACAGTCGCGGCAGCGCCCTTTGAGCATCAGCCAGGAGAACAGCGGaa > 1:714914/1‑199 (MQ=255) cGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCGGATAACGCTTGCTGATTTTCGCCTGACAGTCGCGGCAGCGCCCTTTGAGCATCAGCCAGGGGAACAGCGGAAAATTGTCACGTATCCGGATGGTCGGCTGACCATGAGGGCAg > 1:430405/1‑239 (MQ=255) tCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCGGATAACGCTTGCTGATTTTCGCCTGACAGTCGCGGCAGCGCCCTTTGAGCATCAGCCAGGAGAACAGCGGAATATTGTCACGTATCCGGAGGGTCTGCTGCAAACTTGGGCAGAGCGa > 1:367087/1‑239 (MQ=255) cGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCGGCTAACGCTTGCTGATTTTCGCCTGACAGTCGCGGCAGCGCCCTTTGGGAATCAGCCAGGAGAACAGCGGCAGATTGTAACGTATCCGGATGGCCTGCTGAAAATGAGGGCAGGGGGaa > 2:786772/1‑239 (MQ=255) gATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCGGATAACGCTTGCTGATTTTCGCCTGACAGTCGCGGCAGCGCCCTTTGAGCATCAGCCAGGAGAACAGCGGAATATTGTCACGAATCCGGATGGTCTGCTGACAATTTGGGCAGTGCGaag > 1:460883/1‑238 (MQ=255) cgcgG‑ACATCAACCAGGCGGTAAATTTCACCACCGCCAGCCCCCATCCACTTTCGGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCGGATAACGCTTGCTGATTTTCGCCTGACAGTCGCGGCAGCGCCCTTTGAGCATCAGCCAGGAGAACAGCGGAATATTGTCACGTATCCGGATGGTCTGCTGACAATGTGGGCAGTGCGAACGCGGTAgcg < 1:466773/239‑1 (MQ=255) gcgG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCGGATAACGCTTGCTGATTTTCGCCTGACAGTCGCGGCAGCGCCCTTTGAGCATCAGCCAGGAGAACAGCGGAATATTGTCACGTATCCGGATGGTCTGCTGACAATGCGGGCAGTGCGAACCCGGTAgcgc > 1:850892/1‑239 (MQ=255) actcggCCGGGAGGAAAATATCACAACCGCCAGTCCCTATCCACTTTCTGGCCAGAACAGACTCGCCAGCAAAAAAGCAAGTTCTGGCAATAACTCCACCAGCCGATAACCCTTGCTGATTTTCGCCTGACAGTCGCGGCAGCGCCCTTTGAGCATCAGCCAGGAGAACAGCGGAATATTGTCACGTATCCGGATGGTCTGCTGACAATGTGGGCAGTGCGAACGCGGTAGCGCAAGGc < 1:501282/234‑1 (MQ=255) aaTCCGCCAGGGGGAAAATACCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCGGATAACGCTTGCTGATTTTCGCCTGACAGTCGCGGCAGCGCCCTTTGAGCATCAGCCAGGAGAACAGCGGAATATTGTCACGTATCCGGATGGTCTGCTGACAATGTGGGCAGTGCGAACGCGGTAGCGCAAGGc < 1:739675/239‑1 (MQ=255) aaTCAGCCAGGCGAATAAAATCATCACCGCCAGCCCCCAGCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCGGATAACGCTTGCTGATTTTCGCCTGACAGTCGCGGCAGCGCCCTTTGAGCATCAGCCAGGAGAACAGCGGAATATTGTCACGTATCCGGATGGTCTGCTGACAATGTGGGCAGTGCGAACGCGGTAGCGCAAGGc < 1:898074/239‑1 (MQ=255) ataataTCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCGGATAACGCTTGCTGATTTTCGCCTGACAGTCGCGGCAGCGCCCTTTGAGCATCAGCCAGGAGAACAGCGGAATATTGTCACGTATCCGGATGGTCTGCTGCCAATGTGGGCAGTGCGAACGCGGTAGCGCAAGGCTTATTTTTGACTg > 1:591009/1‑238 (MQ=255) | CGCCCATGCCTAATGCTTCTTTACGCAGAACTATTCCGGCTA‑TCCAACGCAGAGAGTAAAAAGTGATAAATCCCACCAGGACGCCGGTGACTGCATCTTGTAGCGTGAGCGGACTCTGCTGCGCCCATGCCGCAATCAGTCC‑TGTCCACAATACGCCCTGAGTAAAAACATCGGGCAGCCATTGGTGATCGAGGTCGATGACACTCGCGG‑CAATCAGCCAGGCGGATAATATCATCACCGCCAGCCCCCATCCACTTTCTGGCCAGACCAGACTCGCCAGCAAAAAAGCAAGTGCTGTCAATAACTCCACCAGCGGATAACGCTTGCTGATTTTCGCCTGACAGTCGCGGCAGCGCCCTTTGAGCATCAGCCAGGAGAACAGCGGAATATTGTCACGTATCCGGATGGTCTGCTGACAATGTGGGCAGTGCGAACGCGGTAGCGCAAGGCTTATTTTTGACTG > NC_000913/3113731‑3114193 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |