Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC NC_000913 257,908 Δ776 bp 100% [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908–258675 258683 9–776 56 [0] [0] 56 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579070 (0.000)53 (1.100) 42/398 NT 100% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers

CCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTAAAAGACACTGAAGTGGTTGAACGACTGGAGCACACCCTGC  >  NC_000913/258469‑258905
                                                                                                                                                                                                                       |                                                                                                                                                                                                                             
cccatttaacccggtgtatcggaattttgacaaaggtcttcaggaaatcaccgactggatcgaaaaacgcttgtgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgataaaaaaatttaccgcactaggcccgtatattcgggaaggaaagtgcaaaaaaaa                                                                                                                                                                                                                   >  2:24711‑M2/216‑223 (MQ=255)
cccatttaacccggtgtatcggaattttgacaaaagtcttcaggaaatcaccgacttgatcgaaaaacgcttgtgttaaaaatttgctaaattttgccactttggtaaaacagttgcatcacaacaggagatagcaatgccgttaccgcgtggagacccgaagagcagatttgtcaaaaaatttaccgcactagtcccgtatattcttgaaggaaAGTGCAAAGATaa                                                                                                                                                                                                                   >  1:554991‑M2/216‑228 (MQ=255)
             gtgtatcggaattttgacaaaggtcttcaggaaatcaccgactggatcgaaaaacgcttgtgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagcgcagattgatcaaaaaatttaccgcactaggcccgtcaattcgtgaaggaaAGTGAAAAGATAACCGATTCTTTTTc                                                                                                                                                                                                      >  2:139558‑M2/203‑228 (MQ=255)
             gtgtatcggaattttgacaaaggtcttcaggaaatcaccgactggatcgaaaaacgcttgtgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTc                                                                                                                                                                                                            >  1:621194‑M2/203‑222 (MQ=255)
             gtgtatcggaattttgacaaaggtcttcaggaaatcaccgactggatcgaaaaacgcttgtgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCtttt                                                                                                                                                                                                        >  1:244845‑M2/203‑226 (MQ=255)
             gtgtatcggaattttgacaaaggtcttcaggaaatcaccgactggatcgaaaaacgcttgtgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGGGCAAAGATAATCGATTCtttt                                                                                                                                                                                                        >  1:317635‑M2/203‑226 (MQ=255)
              tgtatcggacttttgacaaaggtcttcaggaaatcaccgactggatcgaaaaacgcttgtgttaaaaatttgctaaattttgccaatttggtaaaacagttgcataacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccccactaggaccggatattaggaaaggtaAGGGCAAAAATAACACAATCTTTTtca                                                                                                                                                                                                     >  2:245583‑M2/202‑227 (MQ=255)
                   cggaattttgacaaaggtcttcaggaaatcaccgactggatcgaaaaacgcttgtgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggaaAGTGCAAAGATAATCGATTCTTTTTCGattt                                                                                                                                                                                                 >  1:507205‑M2/197‑226 (MQ=255)
                                aaggtcttcaggaaatcaccgactggatcgaaaaacgcttgtgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGc                                                                                                                                                                                    >  2:385551‑M2/184‑227 (MQ=255)
                                  ggtcttcaggaaatcaccgactggatcgaaaaacgcttgtgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGt                                                                                                                                                                                  <  2:455295‑M2/46‑1 (MQ=255)
                                      ttcaggaaatcaccgactggatcgaaaaacgcttgtgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggaaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAAc                                                                                                                                                                              >  1:416035‑M2/178‑227 (MQ=255)
                                           gaaatcaccgactggatcgaaaaacgcttgtgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggaccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGGTTGTCTGGCTGTATGCGTCAACGGGaaa                                                                                                                                                                        >  1:346815‑M2/173‑228 (MQ=255)
                                             aatcaccgactggatcgaaaaacgcttgtgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggcgatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaactttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTTTCTGGCTGTATGCGTAAACGtgaaaac                                                                                                                                                                      >  2:52017‑M2/171‑226 (MQ=255)
                                                       tggttcaaaaaacggttgggttaaaaagttgctaaatttttccaattgggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCgg                                                                                                                                                              <  2:614181‑M2/66‑1 (MQ=255)
                                                                           ttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGTCACCGGAAGTGCGTGAATTCTGGGTCtg                                                                                                                                        >  1:292901‑M2/141‑228 (MQ=255)
                                                                                 atttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGtggat                                                                                                                                  <  1:491468‑M2/94‑1 (MQ=255)
                                                                                    tgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacacgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATAGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGCCTGTgggatgga                                                                                                                               >  1:259290‑M2/132‑228 (MQ=255)
                                                                                     gctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGTAAGTGCGTGAATTCTGGGGCTGGTGGATGGAg                                                                                                                              >  1:196450‑M2/131‑228 (MQ=255)
                                                                                                ccaatttggtaaaaccgttgcaacacaaccggagatagcaatggcgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCa                                                                                                                   <  2:244845‑M2/109‑1 (MQ=255)
                                                                                                ccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCa                                                                                                                   <  1:385551‑M2/109‑1 (MQ=255)
                                                                                                          aaaacagttgcatcacaacaggagatagcaatgccgttaccgagtggacaccagaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGAAAAGATAAGCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAGCGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGt                                                                                                         <  2:201228‑M2/119‑1 (MQ=255)
                                                                                                                 ttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggaaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACAGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGTTGGAAGCGCGGGAATCCCGTTTTACCt                                                                                                  >  1:80676‑M2/103‑228 (MQ=255)
                                                                                                                  tgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaagggaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGCGCGTGAATTTTGGGGCTGGTGGTGTGAGCTGGAAGCGCAGGAATCCCGTTTtaccaa                                                                                                 >  1:302704‑M2/102‑226 (MQ=255)
                                                                                                                         caacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATCTTGGGGCTGGTGGATGGAGTTGGAGGCGCAGGAACCCCGTTTTACCTACACTTAc                                                                                          >  1:202973‑M2/95‑228 (MQ=255)
                                                                                                                               gagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGttt                                                                                    >  1:526744‑M2/89‑228 (MQ=255)
                                                                                                                                  atagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGt                                                                                 <  1:428942‑M2/143‑1 (MQ=255)
                                                                                                                                  atagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGt                                                                                 <  1:52227‑M2/143‑1 (MQ=255)
                                                                                                                                    agcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCCGTTTgg                                                                                  >  2:52227‑M2/84‑225 (MQ=255)
                                                                                                                                    agcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGGGGATGGGGCTGGAAGCGCGGGAATCCCGTTTTAACTACCGTTACCAGtttgggtt                                                                               >  2:614158‑M2/84‑225 (MQ=255)
                                                                                                                                    agcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGAGGATGGAGCGGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTc                                                                                >  1:536951‑M2/84‑227 (MQ=255)
                                                                                                                                      caatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGTCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGAAGGAATCCCCTTTTACCTACCGTTACCCGTTTGGTCTGt                                                                             >  2:100660‑M2/82‑228 (MQ=255)
                                                                                                                                        atgactgtgccgagtggacacccgaagagcagatttatcaaaaaattttccgcgctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTCTg                                                                              <  1:981‑M2/146‑1 (MQ=255)
                                                                                                                                           acgttaccgggttgacacccgaagggcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTCTGTTCg                                                                          <  2:525539‑M2/150‑1 (MQ=255)
                                                                                                                                                    ggttggcccccgaagaggtgattgatcaaaaaattgaccgcattaggcccttatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGTTGTATGCGTCAACGTGAATCCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGc                                                               <  2:80676‑M2/161‑1 (MQ=255)
                                                                                                                                                      tggaccaccgaagaacatagtgaacaaaaaattttccgaactaggcccgtatattcgggaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGa                                                             <  2:50161‑M2/163‑1 (MQ=255)
                                                                                                                                                      tggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGCTGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCACTTTGGTCTGTTCGGTAAAGCAGGCGa                                                             >  1:17692‑M2/66‑228 (MQ=255)
                                                                                                                                                      tggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGGGGATGGGGCTGGAAGCGCAGGAATCCCGTTTTACCTACGGTTACCAGTTTGGTAtgttcgataaaaaaggggc                                                             >  2:216588‑M2/66‑220 (MQ=255)
                                                                                                                                                       ggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAAGGCAGGAATCCCGTTTTACCTACAGGTACCAGTTTGGACTGTTCGTTAAAGCAGGCGAc                                                            >  1:360663‑M2/65‑228 (MQ=255)
                                                                                                                                                           acccgaagagcagattgatcaaaaaatttaccgcactaggcccgtctattcgtgaaggtaAGTGc                                                                                                                                                                                                                           >  2:588709‑M2/61‑65 (MQ=255)
                                                                                                                                                                     gaggttgaacaaaaaatttaccgcgctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTc                                               <  1:245583‑M2/177‑1 (MQ=255)
                                                                                                                                                                     cagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGTTAATCGATTCttttt                                                                                                                                                                                                       >  1:256638‑M2/51‑75 (MQ=255)
                                                                                                                                                                     caaattttaagaaaaatttaacgacactggcccttatattcgtgaatgtaAGTGCAAAGGTAACTGATTCTTTTTCGATTGTCTGGCTGTATTCGGCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGATGAGTGTTc                                               <  2:360663‑M2/177‑1 (MQ=255)
                                                                                                                                                                      agatggatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTc                                                                                                                                                                                                      <  2:256638‑M2/26‑1 (MQ=255)
                                                                                                                                                                            atcaaaaaatttgccgcactaggcccgtatagtcgtgaaggtaAGTGCAAAGATAATCGATTCTTTGTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCTGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTaaaa                                       <  1:52017‑M2/185‑1 (MQ=255)
                                                                                                                                                                            atcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTaaa                                        <  1:614158‑M2/184‑1 (MQ=255)
                                                                                                                                                                             tcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCtttt                                                                                                                                                                                                        >  2:208790‑M2/43‑66 (MQ=255)
                                                                                                                                                                              caaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttttt                                                                                                                                                                                                       <  1:208790‑M2/25‑1 (MQ=255)
                                                                                                                                                                                                 ggcccgtatattcgtgaaggtaAGGGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTAAAAGACACTGAAGTGGTTGAACGa                  <  2:526744‑M2/206‑1 (MQ=255)
                                                                                                                                                                                                  gcccgttttttggtgaaggtaAGGTCAAAGAAAATCGATTATTTTTCGATTGGCTGGCTGTATGCGTCAACGTGAAACCGGCCCCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTAAAAGACACTGAAGTGGTTGAACGAc                 <  2:507205‑M2/207‑1 (MQ=255)
                                                                                                                                                                                                   cccgtatattcgtgaagggaAGTGCAAAGAGAATCGATTCTGTTTCGATTGTCTGTCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTAAAAGACACTGAAGTGGTTGAACGACt                <  1:24711‑M2/208‑1 (MQ=255)
                                                                                                                                                                                                      gtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTAAAAGAAACTGAAGGGGTTGAACGACTGGa             >  1:347583‑M2/18‑228 (MQ=255)
                                                                                                                                                                                                       tatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGGGCTGGAAGCGCAGGAATCCCGTTTTACCTACGGTTACCAGTTTGGTCTGTTCGTTAAAGCAGTCGACTGGAAGAGTGTTCAGGTAAAAGACACTGAAGTGGTTGATCGACTGGAg            >  1:535293‑M2/17‑228 (MQ=255)
                                                                                                                                                                                                       tatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAACAGTGTTCCGGTCAAAGACACTGAAGGGGTTGAAAGActggga            >  2:171653‑M2/17‑226 (MQ=255)
                                                                                                                                                                                                         tattcgtgaaggtaAGTGAAAAGATAAGCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTAAAAGACACTGAAGTGGTTGAACGACTGGAGca          <  1:100660‑M2/214‑1 (MQ=255)
                                                                                                                                                                                                            tcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTCTGTTCGCTAAAGCAGGCGACTGGAAAATGGTTCCGGTAAAAGCAACTGAAGGGGTTTAAAGActggagaaaac       >  2:226544‑M2/12‑223 (MQ=255)
                                                                                                                                                                                                                 aaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAGAGTTCCGTTAAAGGTCACTGAAGTGGTTGAACGACTGAGGCCCACcctcc  >  1:11264‑M2/7‑226 (MQ=255)
                                                                                                                                                                                                                       |                                                                                                                                                                                                                             
CCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTAAAAGACACTGAAGTGGTTGAACGACTGGAGCACACCCTGC  >  NC_000913/258469‑258905

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.