Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
JC JC	NC_000913	1,979,486	IS5 (+) +4 bp	100%	intergenic (‑271/‑264)	insA ← / → uspC	IS1 repressor TnpA/universal stress protein

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1979486 =	0 (0.000)	32 (0.640)	30/414	NT	100%	intergenic (‑271/‑267)	insA/uspC	IS1 repressor TnpA/universal stress protein
	?	NC_000913	2101749 =	NA (NA)					noncoding (1195/1195 nt)	IS5	repeat region
*	?	NC_000913	= 1979489	0 (0.000)	36 (0.720)	30/414	NT	100%	intergenic (‑274/‑264)	insA/uspC	IS1 repressor TnpA/universal stress protein
	?	NC_000913	= 2290113	NA (NA)					noncoding (1/1195 nt)	IS5	repeat region

CATAATGTATCGCATGAAAAGCGGGAACATAATGAAGTCTGACACCAGCCAGGCTAAGCCTCAAGCACAGGTCAATATCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAG  >  NC_000913/2101530‑2101969                                                                                                                                                                                                                            |                                                                                                                                                                                                                             cATAATGTATCGCATGAAAAGCGGGAACATAATGAAGTCTGACACCAGCCAGGCTAAGCCTCAAGCACAGGTCAATATCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGc                                                                                                                                                                                                                      >  1:65366/1‑228 (MQ=255)         tatccATGAAAAGGGGGAACATAATTAAGTCTGACACCAGCCAGGCTAAGCCTCAAGCACAGGTCAATATCCTCACAGTAAATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAg                                                                                                                                                                                                               <  2:177424/223‑1 (MQ=255)         aTCGCATGAAAAGCGGGAACATAATGAAGTCTGACACCAGCCAGGCTAAGCCTCAAGCACAGGTCAATATCTTCACAGTACATAAAGTAACCTTGATAGAAGCCATTTACACGCACAAAATCTGAAAAACGTAACAGCATAAATGATCCTGCGAACCAATCAACAAACGTATCAGAATAGCACCTTTCTTTAGGAATTTTTGTTTTATTAAGGCAGGTGCGAAAAAGc                                                                                                                                                                                                              >  2:453911/1‑228 (MQ=255)           cGCATGAAAAGCGGGAACATAATGAAGTCTGACACCAGCCAGGCTAAGCCTCAAGCACAGGTCAATATCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAACATATGAAAAACGTACCAGCATAAATGATCATGCGCACCAATCAACCACCGTATCAGAATAGCTCCTTTCTTTAGGAATTTTTGTTTTTTTACGGAAGGTGCGACAAAGCg                                                                                                                                                                                                             >  2:57498/1‑227 (MQ=255)           cGCATGAAAAGCGGGAACATAATGAAGTCTGACACCAGCCAGGCTAAGCCTCAAGCACAGGTCAATATCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGc                                                                                                                                                                                                              >  1:369854/1‑226 (MQ=255)                gAAAAGCGGGAACATAATGAAGTCTGACACCAGCCAGGCTAAGCCTCAAGCACAGGTCAATATCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGa                                                                                                                                                                                                         >  1:357936/1‑226 (MQ=255)                gAAAAGCGGAAACATAATGAAGTCTGAAACCAGCCAGGCTAAGCCTCAAGCACAGGTCAATATCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGaaa                                                                                                                                                                                                       <  2:369854/228‑1 (MQ=255)                        ggAACATAATGAAGTCTGACACCAGCCAGGCTAAGCCTCAAGCACAGGTCAATATCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACCCGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGATTCAGAATAGACACTTTCTTTAGGAATTTTTGTCTTATTAAGGAAGGCGGGAATAAACGGGGAAATTTTtttc                                                                                                                                                                                               >  1:306892/1‑228 (MQ=255)                                aTGAAGTCTGACACCAGCCAGGCTAAGCCTCAAGCACAGGTCAATATCTTCACAGAACATAAAGTAACCTTGATCGAAGCCATTTACACCCACAAAATCTGAAAAACGTACCAACATAAATGAACCTGAGCACCAATCAAAAAACGAATCAGAATAGATACTTTTTTTAGGAAATTTTGTTTTATTAAGGAAGGAGCGAATAAACGGGGGAATTTCTCTCCGCTgg                                                                                                                                                                                         >  1:14389/1‑225 (MQ=255)                                     gTCTGACCCCAGCCAGGATAAGCCTCAAGCACAGGTCAATAACTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGGTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGt                                                                                                                                                                                   <  2:590997/227‑1 (MQ=255)                                     gTCTGACACCAGACAGGCTAAGCCTCAAGCACAGGTCAATACCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGt                                                                                                                                                                                   <  1:453911/227‑1 (MQ=255)                                               cgccagGCTAAGCCTCAAGCACAGGTCAATATCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATCGATACTTTCTTTAGGAATTTTTGTTTTATTAAGACAGGGGCGACTAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCatttaatttc                                                                                                                                                                        >  2:507330/2‑228 (MQ=255)                                                                           atatCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATTTTTGAGCCGATTTTTTCCCCCg                                                                                                                                            >  2:333340/1‑228 (MQ=255)                                                                               cTTCACATTAAATAAAGTAACCTTGATCAAAGCCATTTCCCCGCAAAAAATCTGAAAAACGTACCAGCATAAATTATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTaaa                                                                                                                                        <  2:294881/228‑1 (MQ=255)                                                                                 tCACAGAACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGGGCGAATAAGCGGGGAAATTCTTCTCGGCTGATTCAGTCATTTCATTTTTTCATGTTTGAGCCGATTTTTTCTCCCGTaa                                                                                                                                         >  1:294881/1‑225 (MQ=255)                                                                                        aCATAAAGTAACCTTTATCTAAGCCATTTACACGCACCAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCCCCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGaa                                                                                                                               <  1:160670/228‑1 (MQ=255)                                                                                          aTAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGATTc                                                                                                                             >  1:82363/1‑228 (MQ=255)                                                                                            aaaGTAACCTTGATCGAAACCATTTACACGCACAAAATCTGAAAAACGGTCCAGCATAAATGATCCTGCGAATCAATCAACAACCGTAACAGAATAGATACTTTCTTTATGAATTTTTGTTTTATTAAGGAATGTGCGAATAATCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCCCCCGTAAATGCCTTGAATCAg                                                                                                                           <  2:10077/228‑1 (MQ=25)                                                                                                 aaCCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGGAATTCTTCTCGTCTGACTCAGCCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGTAtacaccttt                                                                                                                      >  2:71751/1‑220 (MQ=255)                                                                                                 aaCCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGCATCAGAATTGCTACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGCGCGAATAACCGGGGTACTTCTTCTCGGCTGCCTGAGTCATTTCATTTCTTCATCTTTGAGCCGATTTTTTATGCCTTAAATGCCTTGATTCCGCCCAt                                                                                                                      >  2:517511/1‑228 (MQ=255)                                                                                                   ccTTGATCGAAGCCATTTACACGCCCAAAATCTGAAAAACGAACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGTAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCTTGTTTGAGCCGCATTTTTCTCCCGTAAACGCCTTGAATCAACCCAttt                                                                                                                    >  2:27633/1‑228 (MQ=37)                                                                                                         tCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAACCGCTTTTTTTTCCCGTAAATGCCTTGAATACGCCTATTTAGACCg                                                                                                              >  2:600952/1‑228 (MQ=255)                                                                                                                             aaaaTTTTAAAAAAGTACCAGCTGAAATTATCCTGCGCACAAATCAACATCCGTATCAGAATAGATACTTGCTTTAGGAATTTTTGTTTTATTAAGTAAGGTGCGAATAAGCGTGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCg                                                                                          <  2:229337/228‑1 (MQ=18)                                                                                                                               aattttaaaaaCTTTCCAACATAAATGTTCCGGCGCACCAATCAACAACCGGATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGtt                                                                                        <  2:65366/222‑1 (MQ=18)                                                                                                                                               cAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCCGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGt                                                                        <  1:333340/228‑1 (MQ=255)                                                                                                                                                  gaTAAATGAGCCGGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCGTTAGTAATTTTTGGTTTATTAAGGAAGGTGCGAATAAGCGGGTAAATTCTTCTCGGCTGACGCAGTCATTTCATTTCTTCATTTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTgag                                                                     <  1:57498/227‑1 (MQ=18)                                                                                                                                                  cATAAATGATCCTTGGCAACAATCAACAACCGTATCAGAATAGATCCTTTCTTTAGGAATTTTTGTTTTATTAAGGAATGTGCGAATAAGCGGGGAAATTCTTCTCTGCTGACTCAGTCATTTCATTTCTTCATGTTTTAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTgag                                                                     <  1:657520/228‑1 (MQ=255)                                                                                                                                                            cccgcgcAACAATCAACAACCGTATCAGAATAGATTCTTTCGTTAGGAATTTTTGTTTTATTAATGAAGTTGCGAATAAGCGTGGAAAGTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCa                                                           <  1:27633/225‑1 (MQ=17)                                                                                                                                                            ccTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGaa                                                                                                                               >  1:348445/1‑160 (MQ=255)                                                                                                                                                            ccTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCa                                                           >  1:533037/1‑228 (MQ=255)                                                                                                                                                            ccTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCa                                                           >  1:173229/1‑228 (MQ=255)                                                                                                                                                            ccTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCCATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTATTGAGATTTCTCCCa                                                           >  2:331069/1‑228 (MQ=255)                                                                                                                                                             cTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTTCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAAt                                                                                                                              <  2:348445/160‑1 (MQ=255)                                                                                                                                                               gcgcACCAATCAACAACCGTATCAGAATAGATACTTTCCTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCTTTTCTTCGCCATTTAAGGCGTTATCCCAAGTTTTTAGTGAGATTCTTCCCACTg                                                        >  2:631404/1‑228 (MQ=255)                                                                                                                                                                cgcACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTTAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGa                                                       >  2:314443/1‑228 (MQ=255)                                                                                                                                                                                  tATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAg                                                                                                                  >  2:453499/1‑151 (MQ=255)                                                                                                                                                                                  tATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTCAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTcc                                        >  1:94860/1‑225 (MQ=255)                                                                                                                                                                                  tATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGAGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCCCCATTTAAGGCGTTATCCCCAGTTTTTAGTGGGACTTTTCCCCCTGACGTATCATTTGGTCcccc                                     >  2:56795/1‑228 (MQ=17)                                                                                                                                                                                   aTCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGa                                                                                                                 <  1:453499/151‑1 (MQ=255)                                                                                                                                                                                             aTACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTATTGAGATCTCTCCAACTGACGAATCATTTGGACCGCCCGAAACAGGtt                          >  1:27890/1‑228 (MQ=255)                                                                                                                                                                                             aTACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTGCGCCATTAAAGGCTTTATCCCCAGTTTTTAGTGTGCACTCTCCCACTGACATTTCATTTGGACAGCCCACAACAGGtt                          >  1:321778/1‑228 (MQ=14)                                                                                                                                                                                                  ttctttAGGAATTTTTGTTTTATTAAGGCAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTTTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCCTTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTTACGTATCATTTGGTCCGCCCGAACCAGGTTGGcc                      >  2:354466/1‑227 (MQ=255)                                                                                                                                                                                                  ttctttAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGTTCCGCCCGAAACAGGTTGCCCa                     >  2:224180/1‑228 (MQ=255)                                                                                                                                                                                                  ttctttAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCa                     >  1:241151/1‑228 (MQ=255)                                                                                                                                                                                                    ctttAGGAATTGTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTGTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGcc                      <  1:507330/225‑1 (MQ=255)                                                                                                                                                                                                          gAATTTTTGTTTTATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCCGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGCGATCTCTCCCACTGACGTATCATTTGGTCTGCCCGAAACTGTTTGGCCACCgggcat             >  1:375829/1‑223 (MQ=11)                                                                                                                                                                                                              ttttttttTATTGGGGAAGGTGCGAATAAGCTGGGAAATTCTTTTCGGCTGACTCAGTCATTTCATTTCTTCAGGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACa         <  2:644380/228‑1 (MQ=9)                                                                                                                                                                                                                     tttttaAGGAAGGTTCAAATAAGCGGGTAAATTCTTCTCGGCTGCCTCAGTCATTTCATCTCTTCATGTTTGAGCCGATTTTTTCCCCCGTTAATGCCTTGAATCAGCCTATTTAGGCCGTTTCTTCGACATTTAAGGCGTTGTCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCTCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAg  <  2:375829/225‑1 (MQ=11)                                                                                                                                                                                                                            |                                                                                                                                                                                                                             CATAATGTATCGCATGAAAAGCGGGAACATAATGAAGTCTGACACCAGCCAGGCTAAGCCTCAAGCACAGGTCAATATCTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAG  >  NC_000913/2101530‑2101969

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.