| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,210,861 | T→G | 17.1% | G27G (GGT→GGG) | rpsU → | 30S ribosomal subunit protein S21 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,210,861 | 0 | T | G | 17.1% | 152.0 / 4.0 | 74 | G27G (GGT→GGG) | rpsU | 30S ribosomal subunit protein S21 |
| Reads supporting (aligned to +/- strand): ref base T (21/33); new base G (16/2); total (39/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.68e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTCCTCACCCTTATAAAAGTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGCAATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGC‑GAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGTTG‑CTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCGGCTTATTTT > NC_000913/3210637‑3211077 | ctcctcACCCTTATAAAAGTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGCAATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTACTCAAAGGCGAGAGGCCCATTCCGGTAATTAAAGGACGTGAAAAC‑AAGCCGTTTGAAGAAGCCCTGCGCTCATTAAACCGTTCCTCGCAAAAAACAGgtggt > 2:626745/1‑226 (MQ=255) ctcACCCTTATAAAAGTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGCAATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAACAGCAGGTGTTATg > 1:404101/1‑228 (MQ=255) ctcACCCTTATAAAAGTCCCTTTCAAAAAAGGCCGCGGGGCTTTACAAACCAGCAGCAATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGAAAATGCCGGAAATTAAAGTACGAGAAAAC‑GAGCCGTCCTACGAAGCTCTGCGCGCCTTAAAACGTCACTGCGAAAAAGCAGAGGTTccg > 2:376538/1‑226 (MQ=255) cACCCTTATAAAAGTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGCAATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTCCGAAAATGCAGGGGTTCTgcc > 1:98477/1‑226 (MQ=255) aCCCTTATAAAAGTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGCAATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACAGGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTGCCTTCAACCGTTCTTGCGGAAAAGCAGTGGTTCTGCCg > 1:47129/1‑228 (MQ=255) tataAAAGTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGCAATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGt > 1:450293/1‑228 (MQ=255) tataAAAGTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGCAATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAAC‑AGCCCGTTCGACGAACCCCTGCGACCCTCCAACGCTTCCTCCGAAAAAGCCGGGGTTTTGCCGGAAGt > 2:373799/1‑228 (MQ=255) tataAAAGTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGCAATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGAACGTGAAACC‑GAGCCGTTCGACGAAGCCCTGCGTCCGTTCAACCGTTCCTGCGAAAAAGCAGGAGTGCTGGCGGAAGt > 1:570816/1‑228 (MQ=255) tataAAAGTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGCAATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGACGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGGGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGt > 1:476799/1‑228 (MQ=255) taAAAGTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGCAATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGCTGCCAGCGGCAAACCGAATTAATCCAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTCCCTTCAAGCGTTCCTTCGAAAAACCAGGGGTTCTGGCGGACGttg > 2:386165/1‑227 (MQ=255) taAAAGTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGCAATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGACGGTAATTAAAGCACGTGAAAAC‑GAGCCGTTCGACGAAGCCATGCGTCGCTTCAACCGTTCCAGCAAACAAGCAGGGGTTCTggagagagata > 2:109317/1‑219 (MQ=255) gTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGCAATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGTCGGAAGTtcgacgt > 1:624723/1‑228 (MQ=255) gTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGCAATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGGGTTCTGGCGGAAGTtcgtcgt > 1:124082/1‑228 (MQ=255) cTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGCAATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATACCGGTAATTAAAGTACGTGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGGGTTCTGGCGGAAGTcggtcgtcggg > 1:91877/1‑226 (MQ=255) tttCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGCAATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGAACGTGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCCGCGAAAAAGCAGGGGTTCTGGCGAAACTtagtcgccgggg > 2:98575/1‑225 (MQ=255) ttCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGCAATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGGGAg > 1:645906/1‑228 (MQ=255) ttCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGCAATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTCCGAAAAAGCAGGCGTTCTGGCGGAAGTTCGCCGTCGTGAg > 1:47224/1‑228 (MQ=255) cAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGCAATTGCAGTAAAATCCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGtt < 1:319847/228‑1 (MQ=255) cAAAAAAGGCCGCGGGGCTTTACAAAGAAGCAGCAATGGCAGTAAAAGTCCGCACAATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGGGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGtt < 1:385699/228‑1 (MQ=255) cTTTACAAGGCGGAACAAATTGCAGAAAAATCCCGCACCATTGTGAAATAAGCTGCGGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGCGGCACATGCCGGTAATTAAAGTACGTGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTa < 1:329810/228‑1 (MQ=255) ttAAAAAGCAGTAGCAATTGCAGTAAAATTCCGCACGATTTGGAAATAAGCTGGCGTTGATGCAAGCGGCAAACCGAATGAAGCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTAcc < 1:417562/228‑1 (MQ=255) agcagcagcAATTGCAGTAAATTTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCCAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGACGTACGCCGTCGGGAGTCCTATGCAAAACAGACTACCTAACgc > 1:212638/1‑227 (MQ=255) agcagcagcAATTGCAGTAAAATTCCGCACCATTTTGAAATAATCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAACC‑GATCCGTTCGACGTAGCTCTGCGTCGCTTCAAGGGTTCATGCGAAAAAGGAGGGGTTCTGTCGGAAGTTCGTCGCCGTGAGTTCTATGAGAAAACGAATACCGAACGt > 1:52834/1‑228 (MQ=255) agcagcagcAATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAAC‑GAGCCGTTCGAGGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGGGTTCTGGGGGAAGTTCGTCGGCGTGAGTTCTATGAAAAACCGCCAACCAAACga > 2:544015/1‑227 (MQ=255) agcagcagcAATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAAC‑GAGCCGTTCGACGTAGCCCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGGGTTCTGGCGGGAGTTCGTCCTGGTGGGTTCTTTGAAAAACCGACTACCGAACga > 2:329810/1‑227 (MQ=255) cagcagcaATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAAC‑GAACCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGGGTTCTGGCGGAAGTTCGTCGTCGGGGGTTTCATGAAAAAACAACAACCCAACGaaa > 2:634413/1‑228 (MQ=255) ggaagaaaTTGCAGTAAAATTCCGCCCCATTTTGAAATAAGCTGGCGTTGAGGCCAGCGGAAAACCGAATTAATCAAAGGTGAGAGGCCCATGCCGGTAATTAAAGTACGTGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAg < 1:649726/222‑1 (MQ=255) gaataaaTTGCAGTAAAATTCCGAACAATTTGGAAAGAAGCTGGGGTGGAGCCCCGGGGAAACCCGAAATAATCAAAGGGGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAg < 2:557690/222‑1 (MQ=255) cagcaATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAAC‑GAGCCGTTCGACGGAGCTCTGCGTCGCTTCAAACGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTGGTCGTGGGTTCTATGAAAAAACAACTCCCGAACGaaaac > 2:544068/1‑225 (MQ=255) aaTTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGGGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAAC‑GTGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCt < 1:304124/228‑1 (MQ=255) aaTTACAGTAAAATTCCGCACCATTTTGAATTAAGGTGCCGTTGATGCCATCGGCAAGCCGAATGAACCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAACC‑GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCt < 2:404101/228‑1 (MQ=255) tgtaaGTAAAGTTCCACAACATTTTGAAATAATGTGGCTTTGATGCCAGGGGAAAACCGAAGTAATCAAAGGTGAGAGGCACATGCCGTTAATTAAATGACGTGAAGAC‑GAGCCGGTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTaa < 2:424474/224‑1 (MQ=255) tGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTTCTAAAAAGCAGGGGTTCTGGCGGAAGTCCGTCGTCGTGGGTTCTAGGAAAAACCGACTACCGCACGTAAGCGCGCTaaa > 2:232334/1‑228 (MQ=255) tGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGGGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTaaa > 1:112394/1‑228 (MQ=255) cACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAGTCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGGGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAACGCGCCAAAGCTTTTGCAGTGaaa > 2:39360/1‑228 (MQ=255) ttttGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGGCTCCCGAACGTAAGGGCGCTAAAGCTCCGGCAGGGAAACGta > 1:567969/1‑226 (MQ=255) tAAGCTGGCGTGGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCga < 1:335439/225‑1 (MQ=255) gCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGt > 1:425520/1‑159 (MQ=255) tgggggTTGAGGCCAGCGGAAACCCGAATAAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGtt < 2:425520/154‑1 (MQ=255) gCAAACCGAATTACGCAAGGGTAAGAGGCAAATGCCGGTAATTAAAGTACGTGAAAGC‑GAGCCGTTCGACGTAGCTCTTCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAGACTGGCTCGC‑GAAAacgcacg < 1:387139/228‑1 (MQ=255) ccaaTTAAACAAAGGGGAGAGGCAAATGCCGGTAATTAAAAGTCGTGAAAAC‑GAGCCGTTCGACGTAGCTCGGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGC‑GAAAACGCACGCCGCa < 2:645906/225‑1 (MQ=255) cGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGC‑GAAAACGCACGCCGCa < 1:544068/227‑1 (MQ=255) agAATCATTCAAAGGGGAGGGGACCATGCCGGTAATTAAAGTACGTGAAAAC‑GAACCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGC‑GAAAACGCACGCCGCa < 2:450293/226‑1 (MQ=255) agAAATAATCAAAGGTGAGAGGCCAATGCCGGTAATTAAAGGTCGTGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGC‑GAAAACGCACGCCGCa < 1:517060/226‑1 (MQ=255) aacAAAGGTAGGAGCAACATGCCGGTAATTAAAGTGCGGTAAAAC‑GAACCGTTCGACGTAGCTCTGCGTCGCTTCAAGCTTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGC‑GAAAACGCACGCCGCACTCGTCTg < 1:109317/226‑1 (MQ=255) ggggtgagGCACATTCAGGTAAATAAAGTATGTGAAAAC‑GGGCCGGTGGCCGTAGCTCTGGGTCGCTGCAAGTGTTCCTGCGAAAAATCAGGTGTTCTGGCGGAAGTTCGGCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGC‑GAAAACGCACGCCGCACTCGTCTGTACTaa < 2:567241/223‑1 (MQ=255) caTGCCGGTAATTAAAGTACGTGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCCCGCGCAGAAACTGGC‑CGCGGAAAACCCACGCCCCACCACTCTGCACCAATTcacccaca > 2:296940/1‑223 (MQ=255) caTGCCGGTAATTAAAGTACGTGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACAGGCCCGC‑AAAAAGGCCACCCCCACCACGCTGTACCAATTcccacgaag > 2:501338/1‑222 (MQ=255) gcgggTAATTAAAGGACGTGAAACC‑GGGCCGTGCGACGTAGCTCTGCCTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGC‑GAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCg < 2:567969/224‑1 (MQ=255) cGGTAATTAAAGGTCGGGAAAAC‑GGGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCTTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGC‑GAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGtt < 1:477376/227‑1 (MQ=255) cGGTAATTAAAGGCAGTGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGC‑GAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGtt < 1:152160/227‑1 (MQ=255) cGGTAATTAAAGGACGTGAAAGC‑GAGCCGGTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGC‑GAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGtt < 1:373799/227‑1 (MQ=255) aggaaaTTAAAGGTGGTGCAAAC‑GGGCCTTTCGTCGTTGCTCGGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCCGTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGC‑GAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGtt < 2:475259/223‑1 (MQ=255) gTAATTAAAGTACGTGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCCCTAAAGATTCTTCAGGGAAACGTCACCGGAAGAAACTGGCACGC‑GAAAACGCCCCCCCCCCTCGTCTGAACTAATCCCCCgagacagtggat > 2:129970/1‑220 (MQ=255) aagtAAAGGACGTTCAAAC‑GGGCCGTGCGATTTAGCCTGGCGTCGATTCAAGCGTTCCGGCGAAAAAGCTGGGGTTCTGGCGGAAGGTCGACGCCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCTGTGAAACGTCACGCGAAGAAACTGGCTCGC‑GAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGTTG‑ctc < 2:476799/224‑1 (MQ=255) aaTTAAAGTACGTTAAAAC‑GAGCCGTTCGACGTAGCTCTGCGGCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTAAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGC‑GAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGtt < 1:232334/223‑1 (MQ=255) aaTTAAAGT‑CACGAAAACGGAGCCGTTCGACGTAACTCTGCGTCGCGTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGC‑GAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGTTG‑ctc < 1:98575/227‑1 (MQ=255) aTTAAAGTTCGTTAAAAC‑GGGCCGTTCGACGTAGCCCTGCGGCGCTTCAAGCGTTCCGGCGAAAAAGCAGGTGTTCTGGCGGAAGTTGGTCGTCGTGAGTTCTATGAAAAACCGACCACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGC‑GAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGTTG‑ctct < 2:624723/227‑1 (MQ=255) aaagtggTGAAAAC‑GAGCCGGTCGGATTTGCTTTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGGTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGC‑GAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGTTG‑CTCTCCGAt < 2:498202/222‑1 (MQ=255) gTGAAAAC‑GTGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGC‑GAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGtt < 1:30824/212‑1 (MQ=255) tGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGC‑GAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGACACCGTTG‑CTCTCCCCTCAGAcca > 1:458226/1‑227 (MQ=255) ggCCGTTCGACGTAGCTCTGCGTCGGTTCAAGCGTTCCTGGGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGC‑GAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGTTG‑CTCTCCGATCAGACCGagttgt < 1:162849/225‑1 (MQ=255) ggCCGTTCGACGTAGCTCTGCGTCGCTTAAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTACGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGC‑GAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGTTG‑CTCTCCGATCAGACCGagttgt < 1:544015/225‑1 (MQ=255) ggTCGTTTCAAGGGTTCCTGCGAAAAAGCAGGTGTTCCGGGGGAATTTCGTCGTCGTGAGTTCGATGAAAAACCGACTACCGAACGTAAGCGCGGTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGC‑GAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGTTG‑CTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGa < 2:91877/227‑1 (MQ=255) cGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGTAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTCAGCGCGCTAAAGCTTCTGCAGTGAAACGCCACGGTACGAACCTGGCTCCC‑CAAAACGACCGCCGCACTCGACCGTACTAATTCCCCGACAGCGCTGACTCT‑CGACCAACCCGAGTTCTAGTATTAAGCCGAGGCTTCCGa > 2:432907/1‑228 (MQ=255) cGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGCAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCt > 1:187347/1‑102 (MQ=255) cGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGC‑GAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGACAGCGTTG‑CTCTCCGATCCAACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGa > 1:410863/1‑228 (MQ=255) gTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCtt < 2:187347/102‑1 (MQ=255) cTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAACCTGGCTCGC‑GAAAACGCACGCCGCCCTCGTCTGTACTAATTCCCCCAGAGCGTTG‑CTCTCCGATCAGACCGAGTTTTAGTTGTAAGTCCGt > 1:228521/1‑215 (MQ=255) cTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGC‑GAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGTTG‑CTCTCCGATCAGACCGGGTTGTAGTTGTAAGGCCGTGCTTCCGCAAGGa > 1:142558/1‑228 (MQ=255) aGCGTTCCTGCGAAAAAGCAGGGTTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGC‑GAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGTTG‑CTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATgcg < 1:39360/228‑1 (MQ=255) ccTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGC‑GAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGTTG‑CTCTCCGATCAGACCGGGTTGGAGTTGGAAGGCCGTGCTTCCCAACGGAAAGCCCGGCtt > 2:39036/1‑228 (MQ=255) cGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGC‑GAAAACGCACGCCGCACTCGCCTGTACTAATTCCCCGAGAGCGTTG‑CTCTCCGATCAGACCGCGTTTTAGTTGTAAGCCCCGGCTTCCGCAAGGAATGGCCGGCTTAttt > 1:628674/1‑228 (MQ=255) aggaaaaGCAGGTGTTCGGGGGGAAGTTCGGCGTCGGTATTTCTAAGGAAAACCGACCACAGAACGTAAGCGCGTGAAAGTTTCTGCAGTGAAACGTCACGCGAAGAAGCTGGCTCGC‑GAAAACCCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGTTG‑CTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCGGCTTAttt < 2:419601/225‑1 (MQ=255) gAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCCC‑GAAAACGCACGCCGCACTCGCCTGTCCTAATTCCCCGAGAGCGTTG‑CTCTCCGATCAGACCGAGTTGTAGTTGTCAGGCCGGGCTTCCGAAAGGAATGCGCGGCTATtttt > 2:168459/1‑228 (MQ=255) | CTCCTCACCCTTATAAAAGTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGCAATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACATGCCGGTAATTAAAGTACGTGAAAAC‑GAGCCGTTCGACGTAGCTCTGCGTCGCTTCAAGCGTTCCTGCGAAAAAGCAGGTGTTCTGGCGGAAGTTCGTCGTCGTGAGTTCTATGAAAAACCGACTACCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGC‑GAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGTTG‑CTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCGGCTTATTTT > NC_000913/3210637‑3211077 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |