| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207796 = | 22 (0.310) | 3 (0.040) +C |
3/424 | NT | 18.8% | coding (296/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209614 = | 4 (0.060) | pseudogene (6/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
AGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAGGACATTATCGGCAGGTGA > NC_000913/1209403‑1209851 | agCGACCTTTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCACTTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCCCGGACCCGGGACCCCAACAGGTAAGGCAGGCCCTTCTCCCCAACCAACGTTTATGAAAATGAAAAAATaa > 2:563091/1‑239 (MQ=255) gattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtactaatgtagccgttactgcattgagtttcgctccttctcccacACCAACGTTTATGAAAATGAAGAAATAACATGCAAATGGCATCCTTCCTGCTTTTACCAGGGGGATTTAAACTACTTCTTGGCTATGAAAGCGCATCAACAGATGACCCAAAAACAAATCTCCACCAAAATGCGCTAAAatgg > 2:128404‑M2/96‑237 (MQ=255) cagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACCACAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGaa < 1:61369/238‑1 (MQ=255) aGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCACCAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCgg > 1:247221/1‑238 (MQ=255) aaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccacACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGAATCATTc > 1:233441‑M2/57‑103 (MQ=255) gCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGGCGGAAAAAACAGCCCGGAACAtaa > 1:919059/1‑237 (MQ=255) cttctcccacACCAACGTTTATGAAAATGAAGAAATAACAAGCACATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACCTAATGCGCTGAACTGTGACGGATGCGAGCTGATTTTTGAAGACAAGCTAAGCGGACAAAAGTACGAAAGGCCGGGACTGAAAAAACTTATCAGGACAttacc > 2:888590‑M2/11‑237 (MQ=255) aaCCAACGTACATGAAAATCAAGAAATAACAAACAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGATTAATGCCTATGTACGCGTATCAACAAATGACCAAACAACAGCTCTTCAACGTAATGCGCTGAACTGAGCCGGAGGCGAGCTGATTTTTGAAAACAAGATCACCGGCAAAAATCACGAACAGCCGGGCCGGAAAACACTTCTCAGGACATAATCGGAAggggg > 2:595609/1‑236 (MQ=255) | AGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAGGACATTATCGGCAGGTGA > NC_000913/1209403‑1209851 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |