| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,062,576 | G→A | 9.8% | L94F (CTT→TTT) | cbpM ← | modulator of CbpA co‑chaperone |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,062,576 | 0 | G | A | 9.8% | 190.9 / 4.7 | 74 | L94F (CTT→TTT) | cbpM | modulator of CbpA co‑chaperone |
| Reads supporting (aligned to +/- strand): ref base G (29/36); new base A (6/2); total (36/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.42e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.19e-01 | |||||||||||
GGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCGT‑CAAATACCCAGGTTGTTTCCTGGATCTCACGCGGTTCAACCACCCCCAAACCGACAATTTCATTCAACTCCTCTTCAG > NC_000913/1062344‑1062797 | ggCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGAAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACCCATCACG‑GATAGGCTCAAAACCGGGAAAGCCGcg > 1:501705/1‑237 (MQ=255) tGCTGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGAACGGTTAAAATGCGTCATCGCATCCGGCAAAAACACATCACG‑GGAGAGCTAAAAACCGGGAAAACCGCCGGGGAAGCAGg‑gggggtt > 2:443354/1‑235 (MQ=255) ggCTGGTGTTAGTTGAGTGCGACCCCCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGtttt < 1:443354/238‑1 (MQ=255) gCTGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCCCAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGGCATCGCCTCCGGCAAACACCCATCACG‑GATGAGCTACAAAACGGGAAACACGCCGGCGCCGCAGG‑CGGgttt > 1:275847/1‑238 (MQ=255) gtgtTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTTTAGACCGGTTAAGATGCGTCATCGCATCCGGCCAAAACACATCACC‑GATGCGCTAAAAACCGGGAAAACCCCTGGCGCAGCAGG‑CGGTTTTccc > 1:509379/1‑236 (MQ=255) tgtTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGTTGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGAAGCGTCATCGCATCCGGCAAAAACCCATCACG‑GATGGGCTACAAACCGGGAAAGCCAGCGGCCCACCAGG‑CGGTTTTccccc > 2:791036/1‑235 (MQ=255) tgtTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGGCCAGCAGC‑CGGTTTTCCTg > 1:530862/1‑237 (MQ=255) tgtTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGGTAAGATGCGTCATCGCATCCGGCCAACACACATAACG‑GATGAGTCACAAACCTGAAAAACCGCCAGCCAAACAGG‑CGGGTTTccgga > 2:317274/1‑235 (MQ=255) tgtTAGCGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTCCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCCTTATGCCGCAGTTGCCGTATGCGGCGTGAACGTCTTATCCGGCCAACAGGCACTGGACTCTTTGTACACCGGTTAAAATGCGGCCTACCAACCGGCAAACACACATCAAC‑GATGAGCTACAACCCCGGAAAGACGCTGGCTCACACGG‑CGGtttttgtt > 2:404269/1‑233 (MQ=255) gtTAGTGGAGTGCGACCCCCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGtttt < 1:822259/232‑1 (MQ=255) tggggggTGCGACCCTCAAAACAGATAACGTCGTTTGGGCGCCTGAAAAGACGGGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCATG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAg < 2:316601/233‑1 (MQ=255) aGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCCCG‑GATGAGCTCCAAACCGGGCAAACCGCTGGCGCAGCAGG‑CGGGTTTCCTGGTTCAg > 1:190812/1‑239 (MQ=255) aGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAg < 1:11227/239‑1 (MQ=255) aGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAAGCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACCCACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCCGCTTTAg > 1:821263/1‑239 (MQ=255) ggtcGACCACCAAAACAGATAACGTCGTTTGTGCGCCTTAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTgcg < 1:632117/235‑1 (MQ=255) gTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACAAACATCACG‑GCTGGGCTACAAACCCGGAAAACCGCCGGGCCAGCAAG‑CGGGTTTTCTGCCTcgcgggcac > 2:827665/1‑231 (MQ=255) gTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCCACCGGAACTTGAATCTTTGTAGACCGGTTAAGCTGCGCCACCCAATCCGGCCACCACCCA‑CTCGCGAGGACCACCAAACCGGGAAAACCCCGGGACCAACAGGAGGGTTTTCCTGCTCCCGGAgcg > 2:686864/1‑239 (MQ=255) ccaccaAAAAAGATAACGTTGTTTGTGCCCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATatc < 1:234502/239‑1 (MQ=255) accaAAACAGATAACGTCGTTTGGGCGCCTGAAAAGGCGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATatcat < 1:544048/239‑1 (MQ=255) tAACGTCGTTTGTGCTCCTTAAAAGACGCGTTTTGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAACCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGt < 2:190812/238‑1 (MQ=255) tttGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCCGCTTCAGGGGCGCAATATCATCCCTTaaagccacgccca > 1:584791/1‑227 (MQ=255) ttgcccccTAAAAAG‑CGCTTTTAGCGTCCCATCAGGCATTAGTGCTCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCGTTGTAGCCCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACcgc < 2:710006/233‑1 (MQ=255) ttgCGCTTGAAAAGCGGCGTTTAGCGTCGCTTCAGGCATTTGGGCGCAGTTTCCGGATGGGGCGGGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGGAGGCCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACcgc < 2:276045/238‑1 (MQ=255) tgtcggcTGAAAAGGCGCGTTTAGCGTCGCATCAGGCATGATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGGCAGCGCCACcgc < 1:352317/233‑1 (MQ=255) gcCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATTCCG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGGGCGCAATATAATCCATTAACGTCAGCGCCCCCCCGAt > 1:833270/1‑238 (MQ=255) aaGGCGCGTTTAGCGTCCCATCAGGCATTAGGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGcc < 1:791036/239‑1 (MQ=255) cactaGGGATTATGGGCCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTGTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCCACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCAt < 1:761354/235‑1 (MQ=255) cATTAGGGGGCGGTTGCCGGATGGGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACg < 1:335139/236‑1 (MQ=255) cATTAGGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTAACCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACg < 1:7149/236‑1 (MQ=255) tagggCGCAGTTGCTGGATGCGGCGTTAACGTCTTATCCTGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGATCTACAAACCGGGAAAGCCGCTGGCGCTGCAGG‑CGGTTTTCCTGCTTCAg < 1:886645/161‑1 (MQ=255) cgcAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTgcg > 2:83402/1‑164 (MQ=255) cgcAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTgcg < 1:83402/164‑1 (MQ=255) aGTTGCCGGATGCGGCGTGAACGGCTTATCCGGCCCACAGGAACTGGAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACcgcg < 1:815822/238‑1 (MQ=255) ttGCCGGAGGGGGGGTTAACGTTTTAACCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACcgcgcg < 1:343135/238‑1 (MQ=255) tGCGGCGTGACCTGTTTTTCCGGCCCACGGGAACTGTAATCTTTGGAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGcacca < 2:899558/238‑1 (MQ=255) cgTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGGCAGCGCCACCCCGATCCCCGGCCAGTCCAGAGCCAGGTCCTTACCCCAGCGTACCGCCCGGTGCACCACaaag > 1:229652/1‑236 (MQ=255) aCGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCa < 1:317274/239‑1 (MQ=255) cGTCTTTCCCGGCCCACAGGAACTGTAATTTTTGGAGACCGGTTAAGATGCGGCATCGCATCCGGAAAACACCCAGCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCa < 2:229652/238‑1 (MQ=255) ttttttCCGGCCCACAGGAATGGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATgg < 2:81838/234‑1 (MQ=255) cGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCGAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCCCCACAATGGCGGCATGGACGT‑Caa > 1:808048/1‑239 (MQ=255) gCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCCGAGCCCGTTCCTGACGCCAGCGTACCGCGCGTTGCACCACAATGGCGGCCTGGTCGG‑CAAAt > 1:310705/1‑239 (MQ=255) ggcaCTGTTATTTTTTTAGCCCGGTTAAGTTGCGTCATCGGTTCCGGCAAACCCAACTCCCG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCGT‑CAAATACCCAgg < 2:420687/236‑1 (MQ=255) aCTGTAATTGTTTTAGGCCGGTTAATATGGCGCTCCCCACCCGGCAAACACACATCACG‑GATGAGTCACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGTCATGGTCGT‑CAAATCCCCAGgttg < 2:821263/239‑1 (MQ=255) cTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCACCGCCACCGCGATCCCCGGCCAGTCCATAGCCAGTTCATTACGCCAGCGTACCGCGCGTTGCACCACAATGGCGGACTGGGCGT‑CAAATACCCCGgctgt > 1:436317/1‑239 (MQ=255) atttAATTTTTGTAGACCGGTTAAGATGCGTCATCGCCTCCGGCAAACACACCTCACG‑GATGAGCTAAAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCGT‑CAAATACCCAGgttg < 2:310705/235‑1 (MQ=255) tGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACcgc < 1:240733/148‑1 (MQ=255) tAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAAAGCCAGTTCATGACGCAGGCGGACCGCGCGGTGCACCACAATGGCGGCATGGTCGC‑CAAATACCCAGGTGGttt > 1:847079/1‑238 (MQ=255) tAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGGTTTCCTGCTTCAGGTGCGCAATATCATCCCTTAACGTCAGCGCCACCGCGATCCCCGGCCCGTCCACACCCCGTTCATCACCCGGGAGTCCCCCCGGTTGCCCCACAAAGGGCGCAGGGGGGC‑CCAAAACCCCGGTGGttt > 2:757653/1‑238 (MQ=255) aTCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCCTGACCCAGGCGTACCGCCCGTTGCACCCCAATGCCGCCAAGGCCGT‑CAAAAACCCAGGTTGTTTccc > 1:420687/1‑238 (MQ=255) aTCTTTGGAGACCGGTTAAAAAGCCTCAACGCATCCGGCAAACCCACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCGCCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCGT‑CAAATACCCAGGTTGTTTCCt < 1:397875/239‑1 (MQ=255) tttGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCCCGCGTTGCACCCCAATGCGGGCATGGTCGT‑CAAAAACCCAGGTTGTTTCCTgg > 1:671723/1‑238 (MQ=255) aacGGTTAAACTGGCTCATCGACTCCGGAAAACACGAGTCCAG‑GATGGGCTACAAACCGGGAAAGCCGCTTGCGGAGTAGG‑CGGTTTGCCTGCTTCAGGTGCCTAATATCATCCCTTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCGT‑CAAATACCCAGGTTGTTTCCTGGATCTCAcg < 2:254561/237‑1 (MQ=255) cggtttAAGATGCGTCATCGCCTACGGCAAACACACATCAGG‑GATGAGCCACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑GGGTTTTCCTGATTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCGT‑CAAATACCCAGGTTGTTTCCTGGATCTCAcg < 2:609465/234‑1 (MQ=255) ccGGTTAAGATGCGTCATCGCATCCGGCAAACACACAACACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTCCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCGT‑CAAATACCCAGGTTGTTTCCTGGATCTCAcg < 1:130404/238‑1 (MQ=255) ccGGTTAAGAGGCGTCAGCGCATCCGGCAAACCCACATCCCG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCGT‑CAAATACCCAGGTTGTTTCCTGGATCTCAcg < 1:396185/238‑1 (MQ=255) cGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATg > 1:509730/1‑201 (MQ=255) cGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCGGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGGGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAAGGCCAGTTCATGAACCAGCCGTACCGCGCGTTTCCCCCACATGGCGGCCACGTCCT‑CAAAAACCAACGGTGTTTCCTGGACATCAccgg > 2:130404/1‑236 (MQ=255) ggTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCGT‑CCAATACCCAGGGTGTTTCCTGGATCTCACCCgg > 1:99277/1‑239 (MQ=255) ttAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCGT‑CAAATACCCCGGTTGTTTCCTGGATTTCACCCgggt > 1:606517/1‑237 (MQ=255) ttAAGATGCGTAATCGCATCCGGCAAACACCCATACCG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACcgcg < 2:489844/175‑1 (MQ=255) gTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCCTGACGCAGGCGTACCCCCCCTTGCACCCCAATCGCGGCCGGGTCTG‑CCAAAAACCAGGATGGTTCCCGGAACCCACCCGGGTCAaccaac > 2:505526/1‑236 (MQ=255) tCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGGGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGcaccc > 1:489844/1‑174 (MQ=255) tCATCGCATCCAGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCCCTGGCGCAGCAGG‑CGGATTTCCTCCTTAAAGTGCGCACTATCATCCCTTAACGTCAGCGCCAACACGTTCCCCAGCCCGTCCAGAGCCAGTTCCTGACGCCGGCGTACCGCGCGCTGCACAACAATGCGTGCATCAGCGT‑CAAACACCCAGGTTGTTTCCGGGAGAACAAGCCGGTCAACCAcccc > 2:587908/1‑239 (MQ=255) tcccgacaaCACACCTCACG‑GATGGGCTACAAACCGGGAAAGCCGCGGGCGCAGCCGG‑CGGGTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCGT‑CAAATACCCAGGTTGTTTCCTGGATCTCACGCGGTTCAACCACCCCCAAACCGa < 2:99277/232‑1 (MQ=255) tCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGGTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCCCGCGTTGCACCACAATGGCGGCATGGTCGT‑CAAATACCCAGGTTGGTTCCTGGATCTTACCCGGTTCCACCCCCCCCAAACCGa > 1:286184/1‑239 (MQ=255) ggCAAACCCACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCGT‑CAAATACCCAGGTTGTTTCCTGGATCTCACGCGGTTCAACCACCCCCAAACCGACaa < 1:815690/239‑1 (MQ=255) cacgTCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCGT‑CAAATACCCAGGTTGTTTCCTGGATCTCACGCGGTTCAACCACCCCCAAACCGACAATttcattc < 1:587908/239‑1 (MQ=255) tccccG‑GGTGAGCTACAAGCCGGGAAAACCGCTGGGCCAGCAGG‑CGGGTTTCCTGCTTCAGGGGCGCAATATCACCCATTACCGTCAGCGCCCCCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCGT‑CAAATACCCAGGTTGTTTCCTGGATCTCACGCGGTTCAACCACCCCCAAACCGACAATTTCATTCAAc < 2:671723/235‑1 (MQ=255) tCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGGTAGCGCCACCCCGATCCCCGGCCCGTCCAAAGCCAGTTACTGACCCAGGCGTACCGCGCGGTGCACCACAATGGCGGCAGTGGCGTCCAAACACCAGGGTTGTTTCC‑GGATCTCACGCGGTGCAACCACCCCCAAACACAAAAATTCATTaaaa > 2:404599/1‑237 (MQ=255) ccgcG‑GATGGGCCACAAGCCGGGAAAGCCGGTGGCGCAGAGGG‑CGGTTTTCCCGCTCCAGGTGCGCAATAACACCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCGT‑CAAATACCCAGGTTGTTTCCTGGATCTCACGCGGTTCAACCACCCCCAAACCGACAATTTCATTCAAct < 2:597529/236‑1 (MQ=255) tGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCGT‑CAAATACCCAGGTTGTTTCCTGGATCTCCCGCGGTTCAACCACCCCCAAACCGACAATTTCATTCAACTCCCCTTc > 1:597529/1‑239 (MQ=255) aGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCGT‑CAAATACCCAGGTTGTTTCCTGGATCTCACGCGGGTCAACCACCCCCAAACCGACAATTTCATTCAACTCCCCTTCag > 1:805849/1‑239 (MQ=255) aGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCGT‑CAAATACCCAGGTTGTTTCCTGGATCTCACCCGGTTCAACCAACCCCAAACCCACAAATTCCTTCAAACCCCCTTctc > 1:43781/1‑237 (MQ=255) aGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCCCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAAGCGTACCGCGCGTTGCACCACAATGGCGGCAAGGTCCT‑CCAATAACCCGGTTGTTTCCTGGATCTCACCCCGGTCAACCCCCCCCCAACCCACAATTTCATTTAACACCCCTTCag > 2:333529/1‑239 (MQ=255) | GGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACG‑GATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGG‑CGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCGT‑CAAATACCCAGGTTGTTTCCTGGATCTCACGCGGTTCAACCACCCCCAAACCGACAATTTCATTCAACTCCTCTTCAG > NC_000913/1062344‑1062797 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |